Rh1BG420400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001767
Physical Location & Seq
Forward (+)
54108194 .. 54108591
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG420400.1

Sequence Viewer

Length: 306 bp
ATGTTGAAACAAGAAGCATTTAAACCGCTCTACTCGGGTTGGGATACTAAGTTGGGACCTGATTTGAAAAGTGTTTTTGAGCACGAGAATGATAAGAGTATAGTTAGACGTTATAATAGTCAAAGCACATTGGACCTCCTTGAATTAATAAGAAATGCATATCGACATCCTGGGCAAAGCACGATGGAACGCCTTGACAAAGAAGTCAGAAAGGATTATTCTGGTTTCTTGCATCACCTTCATGAGGTGGTATGCAGACTCGAGGGGCCTTGCCCTAAGCCTAAGGATGAGGGGAATGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.81

Weight (kDa)

6.2

Isoelectric Point (pI)

21.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AasI GACNNNNNNGTC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 28
AciI CCGC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 3 cut(s) 7, 67, 143
AjnI CCWGG 1 cut(s) 169
Alw21I GWGCWC 1 cut(s) 84
Ama87I CYCGRG 2 cut(s) 34, 260
AoxI GGCC 1 cut(s) 266
AseI ATTAAT 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 56, 133, 266
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 2 cut(s) 34, 260
AvaII GGWCC 2 cut(s) 56, 133
AxyI CCTNAGG 1 cut(s) 282
BauI CACGAG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 84
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 171
BciVI GTATCC 1 cut(s) 37
BfuI GTATCC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 2 cut(s) 56, 133
BmeT110I CYCGRG 2 cut(s) 34, 260
BmgT120I GGNCC 3 cut(s) 56, 133, 266
BmiI GGNNCC 2 cut(s) 57, 267
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse21I CCTNAGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 166, 292
BseLI CCNNNNNNNGG 1 cut(s) 244
BshFI GGCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 2 cut(s) 34, 260
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 1 cut(s) 268
BsoBI CYCGRG 2 cut(s) 34, 260
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 268
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 57, 267
BsrBI CCGCTC 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 170
BssSI CACGAG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 48, 276, 282
BstENI CCTNNNNNAGG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 166, 292
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 282
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 166, 292
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 3 cut(s) 56, 133, 266
CviAII CATG 1 cut(s) 242
CviJI RGCY 2 cut(s) 268, 280
CviKI_1 RGCY 2 cut(s) 268, 280
DdeI CTNAG 3 cut(s) 48, 276, 282
DraI TTTAAA 1 cut(s) 22
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 56, 133
Eco81I CCTNAGG 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 34, 260
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoO109I RGGNCCY 2 cut(s) 56, 266
EcoRII CCWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 1 cut(s) 245
FaiI YATR 5 cut(s) 101, 114, 160, 243, 253
FaqI GGGAC 1 cut(s) 69
FatI CATG 1 cut(s) 241
FokI GGATG 2 cut(s) 153, 299
HaeIII GGCC 1 cut(s) 268
Hin1II CATG 1 cut(s) 245
HinfI GANTC 1 cut(s) 258
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 158, 232, 255
HpyF3I CTNAG 3 cut(s) 48, 276, 282
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 1 cut(s) 245
LpnPI CCDG 4 cut(s) 72, 156, 183, 207
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 109
MbiI CCGCTC 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 4 cut(s) 146, 238, 256, 283
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 2 cut(s) 21, 146
MslI CAYNNNNRTG 2 cut(s) 87, 240
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 57, 267
NsiI ATGCAT 1 cut(s) 160
PaeR7I CTCGAG 1 cut(s) 260
PagI TCATGA 1 cut(s) 241
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PpuMI RGGWCCY 1 cut(s) 56
PshBI ATTAAT 1 cut(s) 146
PsiI TTATAA 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 57, 267
PspPI GGNCC 3 cut(s) 56, 133, 266
PspPPI RGGWCCY 1 cut(s) 56
PspXI VCTCGAGB 1 cut(s) 260
RseI CAYNNNNRTG 2 cut(s) 87, 240
SaqAI TTAA 2 cut(s) 21, 146
Sau96I GGNCC 3 cut(s) 56, 133, 266
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 84
SetI ASST 5 cut(s) 61, 112, 138, 240, 249
SfaNI GCATC 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 260
SinI GGWCC 2 cut(s) 56, 133
SlaI CTCGAG 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 87, 240
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 143
SsiI CCGC 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 169
TaiI ACGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 163, 261
TasI AATT 1 cut(s) 143
Tru1I TTAA 2 cut(s) 21, 146
Tru9I TTAA 2 cut(s) 21, 146
TspDTI ATGAA 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 56, 133
VspI ATTAAT 1 cut(s) 146
XagI CCTNNNNNAGG 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.