Rh7DG230500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001767
Physical Location & Seq
Forward (+)
22819971 .. 22820593
623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG230500.1

Sequence Viewer

Length: 432 bp
ATGGCAGAGGTAATCAATGGAGTCGAACCAGTGCACTACCAATTCAATTATAGAGCAGATGACTTGTTTTATGATGATAAGATATGGTTCGAGAATGGAAAGGAAAGAAGAGTTTCATTTGTTCATTTTAAGGCAGAAGAATGGCTTTCCTACGAGGATCAGAAACAAATGGTGGACAATATCTTCTATCAGAGCAGCAAGGTCAACCACGCAGGCTTGTTGAAGCTGTGGTTTGTCGCATCCTGCTTGGATAAGAGGATGCATCTCATATGTTATGAAAGGTTTGATGCATTGCTAACAGAAGATTGGTTCAAAAATCATAAGAATGGGATGCAGGATAGTTATGGAAACCCATTACTTTGGGTTCAAAGTTCTATAAGATCATCAACCTCAGTGGTAGCTGAGAAGATTTGGCCAACCCTGAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

17.09

Weight (kDa)

5.93

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 413
AgsI TTSAA 4 cut(s) 46, 223, 313, 368
AluBI AGCT 2 cut(s) 226, 401
AluI AGCT 2 cut(s) 226, 401
Alw21I GWGCWC 1 cut(s) 36
Alw44I GTGCAC 1 cut(s) 32
AlwI GGATC 1 cut(s) 165
AoxI GGCC 1 cut(s) 413
ApaLI GTGCAC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 207
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmsI GCATC 5 cut(s) 248, 249, 271, 277, 321
Bse1I ACTGG 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 422
Bse3DI GCAATG 1 cut(s) 290
BseGI GGATG 3 cut(s) 239, 264, 336
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 3 cut(s) 393, 405, 413
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 207
BshFI GGCC 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 36
BsnI GGCC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 157, 380
BspANI GGCC 1 cut(s) 415
BspCNI CTCAG 3 cut(s) 394, 404, 414
BspPI GGATC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 290
BsrI ACTGG 1 cut(s) 29
BssMI GATC 2 cut(s) 157, 380
Bst6I CTCTTC 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 3 cut(s) 391, 402, 422
BstF5I GGATG 3 cut(s) 239, 264, 336
BstKTI GATC 2 cut(s) 160, 383
BstMBI GATC 2 cut(s) 157, 380
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 360
Bsu36I CCTNAGG 1 cut(s) 422
BsuRI GGCC 1 cut(s) 415
BtsCI GGATG 3 cut(s) 239, 264, 336
BtsIMutI CAGTG 2 cut(s) 36, 399
Cac8I GCNNGC 1 cut(s) 214
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviJI RGCY 5 cut(s) 145, 216, 226, 401, 415
CviKI_1 RGCY 5 cut(s) 145, 216, 226, 401, 415
DdeI CTNAG 3 cut(s) 391, 402, 422
DpnI GATC 2 cut(s) 159, 382
DpnII GATC 2 cut(s) 157, 380
EaeI YGGCCR 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 422
EcoT22I ATGCAT 2 cut(s) 264, 292
FaiI YATR 9 cut(s) 51, 72, 85, 269, 271, 276, 321, 345, 377
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FauNDI CATATG 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 3 cut(s) 226, 271, 343
Fsp4HI GCNGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 415
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 1 cut(s) 21
Hpy166II GTNNAC 3 cut(s) 34, 175, 205
Hpy188I TCNGA 2 cut(s) 162, 192
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 3 cut(s) 34, 175, 205
HpyCH4V TGCA 4 cut(s) 34, 262, 290, 334
HpyF3I CTNAG 3 cut(s) 391, 402, 422
Kzo9I GATC 2 cut(s) 157, 380
LpnPI CCDG 4 cut(s) 42, 198, 256, 320
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 5 cut(s) 248, 249, 271, 277, 321
MalI GATC 2 cut(s) 159, 382
MboI GATC 2 cut(s) 157, 380
MboII GAAGA 5 cut(s) 120, 149, 175, 314, 418
MhlI GDGCHC 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 415
MluCI AATT 3 cut(s) 41, 46, 427
MluNI TGGCCA 1 cut(s) 415
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 4 cut(s) 148, 249, 400, 417
Mox20I TGGCCA 1 cut(s) 415
Mph1103I ATGCAT 2 cut(s) 264, 292
MroXI GAANNNNTTC 1 cut(s) 112
MscI TGGCCA 1 cut(s) 415
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 415
NdeI CATATG 1 cut(s) 269
NdeII GATC 2 cut(s) 157, 380
NsiI ATGCAT 2 cut(s) 264, 292
PdmI GAANNNNTTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 2 cut(s) 157, 380
SchI GAGTC 1 cut(s) 30
SduI GDGCHC 1 cut(s) 36
SetI ASST 6 cut(s) 12, 204, 228, 284, 392, 403
SfaNI GCATC 5 cut(s) 248, 249, 271, 277, 321
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 3 cut(s) 41, 46, 427
TaqI TCGA 2 cut(s) 24, 90
TasI AATT 3 cut(s) 41, 46, 427
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 2 cut(s) 36, 399
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 3 cut(s) 105, 113, 291
TspRI CASTG 2 cut(s) 36, 399
VneI GTGCAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 112
Zsp2I ATGCAT 2 cut(s) 264, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.