Rw1G037930

Protein SGT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001767
Physical Location & Seq
Forward (+)
65498745 .. 65503291
4547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037930.1

Sequence Viewer

Length: 1437 bp
ATGGCGTTAGGTCTCGACTGTTCTTCTTCGGCAGCTTATCAGGTATCTAGAGTTAAAATGAGTCTGGTTGACGAAAGAACCATATTGAGGAGCATCGTAACAAAACAGGATCGTCTGTACCTCCTCAATAAGGTGATAGGCGCTCGTTTAATCTCGTATGAGATAAAGAACTTCTTCGTGCCAGAATCATACTACACTGGAACTATCCGATTTGACAACGAGACACAAAAAGAAGCCTGTTTTTTCAAATTTGCACAGAATGAAGGAGAAGTAGCTAAGCATATTTTTAAAGCAGCTTCCAAATTGAATCAAGATGGAATCCTACAGCCCTGGTTTCTCACCAATAACAAATTAGAGAAGACGTGGATTTTATGTTACGAGCACTTCAACTCTCTTCTCAGTGAGCTACCAGATAACAAAATTTTTGAGCTGCCTGAAAATTGGCGTCTCTCTGTTAGGAACTCTATGAAGACCATCAAGTACATACATGAACGCTATCTTCTTCATCTGGGTTTAAAAAAAAGAAGTAGCTACGCCCTAATTAATGACAGGAAGAATGGTTTCAAAATCAAAATCCTCTTTGATCGTAATTCATCGACTGAGAATTCGGTGTACGACATAAAAAAGGCAAAGTTGGATGATTGGAAAGATTATAAGGACGTGCTGGAGTTTCTGTTGAAGTCATTGCCACAAACGGATGACCTAAAGTTGTTTCTAAATTATTTTGGTCTGGACCAAAAAGGGAAATATGATGTATTCGTTGATCGACTCATTGCACATCCTTTTCTCTTGTGTGCTGAAGAAAACATGAATTTTATTGCAAACGTACAGCATGCCATTATTACCCAAAGGATCAATTTTTTAAGTGGTGAAAAATTCAAAGAGTATGAGAATTGGGATAAGAAACTTGATGATTGGCTGAAAGGAAGTTCCTCTGGAATGAATTTGAGATGTGCACAAGGCCAGAGATTTGATGTTTTGTCTACCAAAGTTGACATTCGCCTGGCCAAAGCTGAACCTATACATTCAAGAGATGTCCAGTTCAGCAAGGATAACCCTGTTCCACTAAAGGTTAATGCCCCAGTTATTGGCGTCCAAAGGCCATCTTACCCATCCTCCAAACCAAAATGGGTAGATTGGGACAAGCTTGAAGCCCAAGAAAAAGATGAGAAGCTTGATGGTGATGCAGCTTTGAACAAATTTTTCCAAGACACATTCAAGGATGCTGATGAGGACACAAGAAGGGCCATGAGAAAATCTTTTGTGGAGTTGAACGGAACGGTGCTTTCGACAATCTGGAAAAAAGTGGGCACCAAGAAGGTCAAGGAAAGTGCTCCTGATGGTATGGAGATGAGGAAATGGGAGTACCAAGAGCTCAAGTTGGACAGTGCTTGTAACCTATTTGGAGTGCCTTTCATTTTGGTGGACGCTGTTTAG

Protein Analysis

478

Amino Acids

55.54

Weight (kDa)

8.85

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGS PF05002 379 - 454 2e-27 SGS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AccB1I GGYRCC 1 cut(s) 1310
AccB7I CCANNNNNTGG 1 cut(s) 1088
AccI GTMKAC 1 cut(s) 983
AclWI GGATC 2 cut(s) 117, 860
AcoI YGGCCR 1 cut(s) 1005
AcsI RAATTY 7 cut(s) 248, 420, 604, 811, 875, 943, 1199
AcuI CTGAAG 1 cut(s) 819
AcyI GRCGYC 2 cut(s) 445, 1092
AfaI GTAC 5 cut(s) 119, 482, 614, 828, 1367
AfiI CCNNNNNNNGG 3 cut(s) 87, 130, 1088
AjiI CACGTC 2 cut(s) 363, 661
AjnI CCWGG 2 cut(s) 329, 1002
Alw21I GWGCWC 4 cut(s) 384, 958, 1336, 1377
Alw26I GTCTC 3 cut(s) 17, 215, 452
Alw44I GTGCAC 1 cut(s) 954
AlwI GGATC 2 cut(s) 117, 860
AoxI GGCC 4 cut(s) 961, 1005, 1100, 1245
ApaLI GTGCAC 1 cut(s) 954
ApeKI GCWGC 4 cut(s) 32, 293, 430, 1187
ApoI RAATTY 7 cut(s) 248, 420, 604, 811, 875, 943, 1199
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AseI ATTAAT 1 cut(s) 543
Asp700I GAANNNNTTC 2 cut(s) 173, 560
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 733, 1245
AsuHPI GGTGA 4 cut(s) 145, 331, 881, 1193
AvaII GGWCC 1 cut(s) 733
BaeGI GKGCMC 2 cut(s) 958, 1313
BalI TGGCCA 1 cut(s) 1007
BanI GGYRCC 1 cut(s) 1310
BanII GRGCYC 1 cut(s) 1377
BbsI GAAGAC 2 cut(s) 365, 476
Bbv12I GWGCWC 4 cut(s) 384, 958, 1336, 1377
BbvI GCAGC 4 cut(s) 44, 305, 417, 1199
BccI CCATC 6 cut(s) 308, 482, 1111, 1120, 1172, 1334
BciT130I CCWGG 2 cut(s) 331, 1004
BcoDI GTCTC 3 cut(s) 17, 215, 452
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 4 cut(s) 33, 294, 431, 1188
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 4 cut(s) 34, 295, 432, 1189
Bme1390I CCNGG 2 cut(s) 331, 1004
Bme18I GGWCC 1 cut(s) 733
BmgBI CACGTC 2 cut(s) 363, 661
BmgT120I GGNCC 2 cut(s) 733, 1245
BmiI GGNNCC 1 cut(s) 1312
BmrFI CCNGG 2 cut(s) 331, 1004
BmrI ACTGGG 1 cut(s) 1076
BmsI GCATC 3 cut(s) 102, 1174, 1213
BmuI ACTGGG 1 cut(s) 1076
BpiI GAAGAC 2 cut(s) 365, 476
BpmI CTGGAG 1 cut(s) 686
Bpu1102I GCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 1361
BsaHI GRCGYC 2 cut(s) 445, 1092
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 329
BsaXI ACNNNNNCTCC 4 cut(s) 659, 689, 1100, 1130
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 130, 1088
Bse1I ACTGG 3 cut(s) 202, 1039, 1082
Bse3DI GCAATG 2 cut(s) 683, 771
BseBI CCWGG 2 cut(s) 331, 1004
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 5 cut(s) 643, 703, 778, 1112, 1228
BseLI CCNNNNNNNGG 3 cut(s) 87, 130, 1088
BseMI GCAATG 2 cut(s) 683, 771
BseMII CTCAG 2 cut(s) 412, 591
BseNI ACTGG 3 cut(s) 202, 1039, 1082
BseRI GAGGAG 2 cut(s) 103, 113
BseSI GKGCMC 2 cut(s) 958, 1313
BseXI GCAGC 4 cut(s) 44, 305, 417, 1199
BshFI GGCC 4 cut(s) 963, 1007, 1102, 1247
BshNI GGYRCC 1 cut(s) 1310
BsiHKAI GWGCWC 4 cut(s) 384, 958, 1336, 1377
BslFI GGGAC 1 cut(s) 1154
BslI CCNNNNNNNGG 3 cut(s) 87, 130, 1088
BsmAI GTCTC 3 cut(s) 17, 215, 452
BsmBI CGTCTC 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 1154
BsnI GGCC 4 cut(s) 963, 1007, 1102, 1247
Bso31I GGTCTC 1 cut(s) 17
Bsp1286I GDGCHC 5 cut(s) 384, 958, 1313, 1336, 1377
Bsp143I GATC 4 cut(s) 109, 583, 763, 852
Bsp1720I GCTNAGC 1 cut(s) 276
BspANI GGCC 4 cut(s) 963, 1007, 1102, 1247
BspCNI CTCAG 2 cut(s) 411, 592
BspLI GGNNCC 1 cut(s) 1312
BspPI GGATC 2 cut(s) 117, 860
BspT107I GGYRCC 1 cut(s) 1310
BspTNI GGTCTC 1 cut(s) 17
BsrDI GCAATG 2 cut(s) 683, 771
BsrI ACTGG 3 cut(s) 202, 1039, 1082
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 4 cut(s) 109, 583, 763, 852
BssNI GRCGYC 2 cut(s) 445, 1092
Bst2UI CCWGG 2 cut(s) 331, 1004
Bst4CI ACNGT 3 cut(s) 20, 1282, 1388
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 2 cut(s) 445, 1092
BstC8I GCNNGC 1 cut(s) 834
BstDEI CTNAG 3 cut(s) 276, 398, 600
BstENI CCTNNNNNAGG 1 cut(s) 128
BstF5I GGATG 5 cut(s) 643, 703, 778, 1112, 1228
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 4 cut(s) 112, 586, 766, 855
BstMAI GTCTC 3 cut(s) 17, 215, 452
BstMBI GATC 4 cut(s) 109, 583, 763, 852
BstNI CCWGG 2 cut(s) 331, 1004
BstNSI RCATGY 1 cut(s) 836
BstSCI CCNGG 2 cut(s) 329, 1002
BstSFI CTRYAG 1 cut(s) 323
BstSLI GKGCMC 2 cut(s) 958, 1313
BstV1I GCAGC 4 cut(s) 44, 305, 417, 1199
BstV2I GAAGAC 2 cut(s) 365, 476
BsuRI GGCC 4 cut(s) 963, 1007, 1102, 1247
BtrI CACGTC 2 cut(s) 363, 661
BtsCI GGATG 5 cut(s) 643, 703, 778, 1112, 1228
BtsIMutI CAGTG 3 cut(s) 195, 406, 1393
Cac8I GCNNGC 1 cut(s) 834
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 733, 1245
CseI GACGC 2 cut(s) 434, 1081
Csp6I GTAC 5 cut(s) 118, 481, 613, 827, 1366
CviAII CATG 4 cut(s) 488, 808, 833, 1249
CviQI GTAC 5 cut(s) 118, 481, 613, 827, 1366
DdeI CTNAG 3 cut(s) 276, 398, 600
DpnI GATC 4 cut(s) 111, 585, 765, 854
DpnII GATC 4 cut(s) 109, 583, 763, 852
DraI TTTAAA 2 cut(s) 289, 516
EaeI YGGCCR 1 cut(s) 1005
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Ecl136II GAGCTC 1 cut(s) 1375
Eco24I GRGCYC 1 cut(s) 1377
Eco31I GGTCTC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 733
Eco53kI GAGCTC 1 cut(s) 1375
Eco57I CTGAAG 1 cut(s) 819
EcoICRI GAGCTC 1 cut(s) 1375
EcoNI CCTNNNNNAGG 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 604
EcoRII CCWGG 2 cut(s) 329, 1002
EcoT38I GRGCYC 1 cut(s) 1377
Esp3I CGTCTC 1 cut(s) 452
FaeI CATG 4 cut(s) 491, 811, 836, 1252
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 1090, 1122
FaqI GGGAC 1 cut(s) 1154
FatI CATG 4 cut(s) 487, 807, 832, 1248
FblI GTMKAC 1 cut(s) 983
Fnu4HI GCNGC 4 cut(s) 33, 294, 431, 1188
FokI GGATG 5 cut(s) 650, 710, 765, 1099, 1235
FriOI GRGCYC 1 cut(s) 1377
Fsp4HI GCNGC 4 cut(s) 33, 294, 431, 1188
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 142
GluI GCNGC 4 cut(s) 33, 294, 431, 1188
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 4 cut(s) 963, 1007, 1102, 1247
HgaI GACGC 2 cut(s) 434, 1081
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 2 cut(s) 445, 1092
Hin1II CATG 4 cut(s) 491, 811, 836, 1252
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 2 cut(s) 70, 994
HindII GTYRAC 2 cut(s) 70, 994
HindIII AAGCTT 2 cut(s) 1145, 1172
HinfI GANTC 5 cut(s) 61, 185, 307, 318, 768
HphI GGTGA 4 cut(s) 145, 331, 881, 1193
Hpy166II GTNNAC 6 cut(s) 70, 613, 956, 984, 994, 1426
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 8 cut(s) 14, 48, 311, 731, 936, 1029, 1297, 1337
Hpy8I GTNNAC 6 cut(s) 70, 613, 956, 984, 994, 1426
HpyAV CCTTC 3 cut(s) 257, 1236, 1312
HpyCH4III ACNGT 3 cut(s) 20, 1282, 1388
HpyCH4IV ACGT 3 cut(s) 362, 660, 825
HpyCH4V TGCA 5 cut(s) 254, 776, 821, 956, 1187
HpyF3I CTNAG 3 cut(s) 276, 398, 600
HpySE526I ACGT 3 cut(s) 362, 660, 825
Hsp92I GRCGYC 2 cut(s) 445, 1092
Hsp92II CATG 4 cut(s) 491, 811, 836, 1252
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 4 cut(s) 109, 583, 763, 852
LmnI GCTCC 2 cut(s) 90, 1339
Lsp1109I GCAGC 4 cut(s) 44, 305, 417, 1199
LweI GCATC 3 cut(s) 102, 1174, 1213
MaeI CTAG 1 cut(s) 48
MaeII ACGT 3 cut(s) 362, 660, 825
MaeIII GTNAC 3 cut(s) 97, 374, 1394
MalI GATC 4 cut(s) 111, 585, 765, 854
MboI GATC 4 cut(s) 109, 583, 763, 852
MhlI GDGCHC 5 cut(s) 384, 958, 1313, 1336, 1377
MlsI TGGCCA 1 cut(s) 1007
MluNI TGGCCA 1 cut(s) 1007
MlyI GAGTC 2 cut(s) 70, 762
MmeI TCCRAC 2 cut(s) 615, 1362
MnlI CCTC 8 cut(s) 81, 131, 134, 587, 943, 1126, 1225, 1347
Mox20I TGGCCA 1 cut(s) 1007
MroXI GAANNNNTTC 2 cut(s) 173, 560
MscI TGGCCA 1 cut(s) 1007
MseI TTAA 7 cut(s) 54, 149, 288, 515, 543, 863, 1074
MslI CAYNNNNRTG 1 cut(s) 1421
Msp20I TGGCCA 1 cut(s) 1007
MspR9I CCNGG 2 cut(s) 331, 1004
MvaI CCWGG 2 cut(s) 331, 1004
NdeII GATC 4 cut(s) 109, 583, 763, 852
NlaIII CATG 4 cut(s) 491, 811, 836, 1252
NlaIV GGNNCC 1 cut(s) 1312
NspI RCATGY 1 cut(s) 836
PaeI GCATGC 1 cut(s) 836
PcsI WCGNNNNNNNCGW 1 cut(s) 1286
PdmI GAANNNNTTC 2 cut(s) 173, 560
PfeI GAWTC 3 cut(s) 185, 307, 318
PflMI CCANNNNNTGG 1 cut(s) 1088
PkrI GCNGC 4 cut(s) 34, 295, 432, 1189
PleI GAGTC 2 cut(s) 69, 762
PpsI GAGTC 2 cut(s) 69, 762
PshBI ATTAAT 1 cut(s) 543
PsiI TTATAA 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 1377
Psp6I CCWGG 2 cut(s) 329, 1002
PspGI CCWGG 2 cut(s) 329, 1002
PspN4I GGNNCC 1 cut(s) 1312
PspPI GGNCC 2 cut(s) 733, 1245
RsaI GTAC 5 cut(s) 119, 482, 614, 828, 1367
RsaNI GTAC 5 cut(s) 118, 481, 613, 827, 1366
RseI CAYNNNNRTG 1 cut(s) 1421
SacI GAGCTC 1 cut(s) 1377
SaqAI TTAA 7 cut(s) 54, 149, 288, 515, 543, 863, 1074
SatI GCNGC 4 cut(s) 33, 294, 431, 1188
Sau3AI GATC 4 cut(s) 109, 583, 763, 852
Sau96I GGNCC 2 cut(s) 733, 1245
SchI GAGTC 2 cut(s) 70, 762
ScrFI CCNGG 2 cut(s) 331, 1004
SduI GDGCHC 5 cut(s) 384, 958, 1313, 1336, 1377
SfaNI GCATC 3 cut(s) 102, 1174, 1213
SfcI CTRYAG 1 cut(s) 323
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 1421
SmlI CTYRAG 1 cut(s) 1376
SmoI CTYRAG 1 cut(s) 1376
SphI GCATGC 1 cut(s) 836
SspMI CTAG 1 cut(s) 48
SstI GAGCTC 1 cut(s) 1377
StyD4I CCNGG 2 cut(s) 329, 1002
TaaI ACNGT 3 cut(s) 20, 1282, 1388
TaiI ACGT 3 cut(s) 365, 663, 828
TaqI TCGA 4 cut(s) 15, 596, 766, 1289
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 3 cut(s) 185, 307, 318
Tru1I TTAA 7 cut(s) 54, 149, 288, 515, 543, 863, 1074
Tru9I TTAA 7 cut(s) 54, 149, 288, 515, 543, 863, 1074
TscAI CASTG 3 cut(s) 202, 406, 1393
TseI GCWGC 4 cut(s) 32, 293, 430, 1187
TspDTI ATGAA 8 cut(s) 276, 482, 494, 504, 582, 824, 956, 1405
TspGWI ACGGA 2 cut(s) 710, 1290
TspRI CASTG 3 cut(s) 202, 406, 1393
Van91I CCANNNNNTGG 1 cut(s) 1088
VneI GTGCAC 1 cut(s) 954
VpaK11BI GGWCC 1 cut(s) 733
VspI ATTAAT 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 128
XapI RAATTY 7 cut(s) 248, 420, 604, 811, 875, 943, 1199
XbaI TCTAGA 1 cut(s) 47
XceI RCATGY 1 cut(s) 836
XmiI GTMKAC 1 cut(s) 983
XmnI GAANNNNTTC 2 cut(s) 173, 560
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.