Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

26747503 .. 26750739

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG284600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCATGCAAGTGCCTCAAAACGACACTTGACTGACTTCAGTCTCTTCGTCAAACAGGGGGTTATGCTGAAACCCTCTCCACCTAAACCCATGATCTCCAACATCCAAACTGCGCCGGAAGTTGCGCCGGAAGAGGTTCTCCTCACGAAAATATTACAGAAAAAGCTCGAGAATACCGATCAGAATACCGTTCTCGGAGCCTCCATAATGGAGTACCGGCTTCATTACATCAGTGGGAGCCCTTATTACAACGGCACAATTATTTTTCAGAACGGTGACACAAAAGAGGTGTCTTTTATTCCCTTTGATAAAGCAGAAGGCAAGAAAGTTTGTGATATATACACTTATAGCACAAATATCTGTGATGAAAGGGTTCTTAGGCCCTGGTACATTTCGTATTGTGAAGATATTTGCGAGCACATTATTTGCTATGACCGATTCCACTACTCTTTAAGATATTGGCTGCCAAGGTGGACCAAATCCAATAGTGTTAAAGATGCATATGGTTTGCCTCACTCAGTAATTAAGACACAAATCAGCAAGCTATTGAAATCTGTGAATAACATTCACAAGAGCGGATTGCTTCACCTATCACTCTCTGATATCTCTAACTATGTTGTTATTGACAACAATTGGTATATTATTAATGTCGGTGGCAATCTTAAGACTCTTAACCTATCCAATAGACAGCAGATGGTCATAAAGGACTTCCAAAATTTTGGTAACATGCTTGAGAAAAATGTTCTCTTAGACACTTCATGGCGAGAAAGAAATGACTTCTTAAACACATTTGCTAATAATGTTTCTCCTAATCGACTTGTCCTGATTCTATTGGACAATGTATTCACAAAATCTTCATATGATCGACTTCAAATGTTTTCAAAAATTCATCACGAATGGAAGGACCGTAGTCGCAATTGCAATATGTTAAATAATGCCATTTCAAATGGAGTGTTTAACTGTTATATTACTAATGGAGGATGGGACAAGGTTCCCATGGGCAATGTTTTGTCTCAAACTACTTTATTACTACTGAGAATCCAGCCAACAAGAGGTAGATCAATTGCAATGATAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

41.4

Weight (kDa)

9.15

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	576
AciI	CCGC	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	715, 885
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	2 cut(s)	215, 389
AfiI	CCNNNNNNNGG	1 cut(s)	1052
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	4 cut(s)	550, 872, 882, 945
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	2 cut(s)	166, 544
AluI	AGCT	2 cut(s)	166, 544
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	47, 1017
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	2 cut(s)	715, 885
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AseI	ATTAAT	1 cut(s)	645
Asp700I	GAANNNNTTC	2 cut(s)	135, 372
AspLEI	GCGC	2 cut(s)	115, 127
AspS9I	GGNCC	3 cut(s)	381, 474, 904
AsuHPI	GGTGA	2 cut(s)	287, 578
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	474, 904
BanII	GRGCYC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	688, 975
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	47, 1017
BfrI	CTTAAG	1 cut(s)	662
BisI	GCNGC	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	465
Bme1390I	CCNGG	1 cut(s)	385
Bme18I	GGWCC	2 cut(s)	474, 904
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	3 cut(s)	381, 474, 904
BmiI	GGNNCC	3 cut(s)	199, 239, 993
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	487
BoxI	GACNNNNGTC	2 cut(s)	39, 909
BpuEI	CTTGAG	1 cut(s)	752
BsaJI	CCNNGG	3 cut(s)	383, 467, 996
Bsc4I	CCNNNNNNNGG	1 cut(s)	1052
Bse118I	RCCGGY	1 cut(s)	216
Bse3DI	GCAATG	2 cut(s)	1009, 1074
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	3 cut(s)	383, 467, 996
BseGI	GGATG	2 cut(s)	102, 986
BseLI	CCNNNNNNNGG	1 cut(s)	1052
BseMI	GCAATG	2 cut(s)	1009, 1074
BseMII	CTCAG	2 cut(s)	531, 1025
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	450
BshFI	GGCC	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	3 cut(s)	116, 128, 217
BslFI	GGGAC	1 cut(s)	998
BslI	CCNNNNNNNGG	1 cut(s)	1052
BsmAI	GTCTC	2 cut(s)	47, 1017
BsmFI	GGGAC	1 cut(s)	998
BsnI	GGCC	1 cut(s)	382
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	242, 420
Bsp143I	GATC	4 cut(s)	93, 178, 862, 1058
Bsp19I	CCATGG	1 cut(s)	996
BspACI	CCGC	1 cut(s)	576
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	2 cut(s)	530, 1026
BspLI	GGNNCC	3 cut(s)	199, 239, 993
BspTI	CTTAAG	1 cut(s)	662
BsrBI	CCGCTC	1 cut(s)	576
BsrDI	GCAATG	2 cut(s)	1009, 1074
BsrFI	RCCGGY	1 cut(s)	216
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	383, 467, 996
BssMI	GATC	4 cut(s)	93, 178, 862, 1058
BssT1I	CCWWGG	2 cut(s)	467, 996
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	4 cut(s)	190, 275, 908, 962
Bst6I	CTCTTC	2 cut(s)	50, 126
BstAFI	CTTAAG	1 cut(s)	662
BstC8I	GCNNGC	3 cut(s)	6, 416, 542
BstDEI	CTNAG	4 cut(s)	377, 517, 748, 1034
BstDSI	CCRYGG	1 cut(s)	996
BstF5I	GGATG	2 cut(s)	102, 986
BstHHI	GCGC	2 cut(s)	115, 127
BstKTI	GATC	4 cut(s)	96, 181, 865, 1061
BstMAI	GTCTC	2 cut(s)	47, 1017
BstMBI	GATC	4 cut(s)	93, 178, 862, 1058
BstNI	CCWGG	1 cut(s)	385
BstNSI	RCATGY	2 cut(s)	8, 730
BstPAI	GACNNNNGTC	2 cut(s)	39, 909
BstSCI	CCNGG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	450
BstXI	CCANNNNNNTGG	1 cut(s)	719
BsuRI	GGCC	1 cut(s)	382
BtgI	CCRYGG	1 cut(s)	996
BtsCI	GGATG	2 cut(s)	102, 986
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	3 cut(s)	6, 416, 542
CfoI	GCGC	2 cut(s)	115, 127
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	381, 474, 904
Csp6I	GTAC	2 cut(s)	214, 388
CviAII	CATG	5 cut(s)	5, 91, 727, 759, 997
CviJI	RGCY	8 cut(s)	166, 200, 220, 240, 382, 463, 544, 1045
CviKI_1	RGCY	8 cut(s)	166, 200, 220, 240, 382, 463, 544, 1045
CviQI	GTAC	2 cut(s)	214, 388
DdeI	CTNAG	4 cut(s)	377, 517, 748, 1034
DpnI	GATC	4 cut(s)	95, 180, 864, 1060
DpnII	GATC	4 cut(s)	93, 178, 862, 1058
Eam1104I	CTCTTC	2 cut(s)	50, 126
EarI	CTCTTC	2 cut(s)	50, 126
Eco130I	CCWWGG	2 cut(s)	467, 996
Eco24I	GRGCYC	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	2 cut(s)	474, 904
Eco57I	CTGAAG	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	2 cut(s)	467, 996
EcoT22I	ATGCAT	2 cut(s)	6, 502
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	2 cut(s)	467, 996
FaeI	CATG	5 cut(s)	8, 94, 730, 762, 1000
FaqI	GGGAC	1 cut(s)	998
FatI	CATG	5 cut(s)	4, 90, 726, 758, 996
FauNDI	CATATG	2 cut(s)	502, 859
Fnu4HI	GCNGC	1 cut(s)	464
FokI	GGATG	2 cut(s)	89, 993
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	464
GlaI	GCGC	2 cut(s)	114, 126
GluI	GCNGC	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	3 cut(s)	116, 128, 217
HhaI	GCGC	2 cut(s)	115, 127
Hin1II	CATG	5 cut(s)	8, 94, 730, 762, 1000
Hin6I	GCGC	2 cut(s)	113, 125
HinP1I	GCGC	2 cut(s)	113, 125
HinfI	GANTC	4 cut(s)	438, 667, 826, 1038
HpaII	CCGG	3 cut(s)	116, 128, 217
HphI	GGTGA	2 cut(s)	287, 578
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	4 cut(s)	183, 197, 270, 601
Hpy188III	TCNNGA	4 cut(s)	145, 169, 823, 893
Hpy8I	GTNNAC	1 cut(s)	474
HpyAV	CCTTC	2 cut(s)	311, 895
HpyCH4III	ACNGT	4 cut(s)	190, 275, 908, 962
HpyCH4V	TGCA	5 cut(s)	4, 8, 500, 921, 1067
HpyF3I	CTNAG	4 cut(s)	377, 517, 748, 1034
Hsp92II	CATG	5 cut(s)	8, 94, 730, 762, 1000
HspAI	GCGC	2 cut(s)	113, 125
Kzo9I	GATC	4 cut(s)	93, 178, 862, 1058
LmnI	GCTCC	2 cut(s)	197, 237
LpnPI	CCDG	8 cut(s)	41, 129, 141, 230, 370, 397, 836, 1055
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	1 cut(s)	487
MaeIII	GTNAC	2 cut(s)	275, 722
MalI	GATC	4 cut(s)	95, 180, 864, 1060
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	4 cut(s)	93, 178, 862, 1058
MboII	GAAGA	4 cut(s)	37, 143, 416, 846
MfeI	CAATTG	3 cut(s)	631, 916, 1062
MhlI	GDGCHC	2 cut(s)	242, 420
MluCI	AATT	7 cut(s)	258, 522, 631, 715, 885, 916, 1062
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	9 cut(s)	25, 85, 127, 152, 211, 280, 522, 971, 1046
Mph1103I	ATGCAT	2 cut(s)	6, 502
MroXI	GAANNNNTTC	2 cut(s)	135, 372
MseI	TTAA	9 cut(s)	452, 492, 525, 645, 663, 672, 782, 929, 957
MslI	CAYNNNNRTG	1 cut(s)	9
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	3 cut(s)	116, 128, 217
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	3 cut(s)	631, 916, 1062
MvaI	CCWGG	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	996
NdeI	CATATG	2 cut(s)	502, 859
NdeII	GATC	4 cut(s)	93, 178, 862, 1058
NlaIII	CATG	5 cut(s)	8, 94, 730, 762, 1000
NlaIV	GGNNCC	3 cut(s)	199, 239, 993
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	2 cut(s)	6, 502
NspI	RCATGY	2 cut(s)	8, 730
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	2 cut(s)	135, 372
PfeI	GAWTC	3 cut(s)	438, 826, 1038
PkrI	GCNGC	1 cut(s)	465
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PshAI	GACNNNNGTC	2 cut(s)	39, 909
PshBI	ATTAAT	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	3 cut(s)	199, 239, 993
PspPI	GGNCC	3 cut(s)	381, 474, 904
RsaI	GTAC	2 cut(s)	215, 389
RsaNI	GTAC	2 cut(s)	214, 388
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	9 cut(s)	452, 492, 525, 645, 663, 672, 782, 929, 957
SatI	GCNGC	1 cut(s)	464
Sau3AI	GATC	4 cut(s)	93, 178, 862, 1058
Sau96I	GGNCC	3 cut(s)	381, 474, 904
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	2 cut(s)	242, 420
SfaNI	GCATC	1 cut(s)	487
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	474, 904
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	3 cut(s)	167, 662, 731
SmoI	CTYRAG	3 cut(s)	167, 662, 731
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	7 cut(s)	258, 522, 631, 715, 885, 916, 1062
SsiI	CCGC	1 cut(s)	576
SspI	AATATT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	2 cut(s)	467, 996
TaaI	ACNGT	4 cut(s)	190, 275, 908, 962
TaqI	TCGA	3 cut(s)	168, 814, 865
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	7 cut(s)	258, 522, 631, 715, 885, 916, 1062
TfiI	GAWTC	3 cut(s)	438, 826, 1038
Tru1I	TTAA	9 cut(s)	452, 492, 525, 645, 663, 672, 782, 929, 957
Tru9I	TTAA	9 cut(s)	452, 492, 525, 645, 663, 672, 782, 929, 957
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	5 cut(s)	212, 381, 747, 846, 878
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	474, 904
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	2 cut(s)	715, 885
XceI	RCATGY	2 cut(s)	8, 730
XhoI	CTCGAG	1 cut(s)	167
XmnI	GAANNNNTTC	2 cut(s)	135, 372
Zsp2I	ATGCAT	2 cut(s)	6, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.