Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Reverse (-)

65284581 .. 65287998

Gene Structure 3418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60248

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCTAGTCAACAGCGTTTCTTAGAATCATTTGAAAAAAAAATCAGCCAATATTCCAATTCCAAAAGCAAACCTCGACGACGATCCAGCACTTCCAGCACTCCCAGCACTCCCCCGCTCATGAATGTAGACATCATGCAATACGAGTTTTCATTCACAAAAAAGGATGACCCGTATTTTTGTGGAAAAATCAAATTCTCTTCTGATGAAGAAAGAGAGGCGAGGTTTTTCGTGGTTGAAGACAAACAGATAGCTATGAAGATATGGAAGGAAAGCTCAAACTTAAGACACAATGCAATTTTAAAGCTTTGGTTTGTCAGCTATTGCGACAAATTCGAAGGTTGGATTTTGGGCTATGAGAAATTCGACCATCTTCTAGATGCTTGGCTAAAATTACCGGACATAGCAACAAAGATTAGAGATCATGATTTGCTAAATACTGAGTTTAGCCCTTCCATTAGCACACTTATAGAAGGAATCAATTACCTCAACGAGCGTAATCTTTTTCACGGGGGCTTGGACCAAAGCTGCAACTTCGTTGTTATAGATAAGGAGGTGAAAATTATCAATATCGGCAAGCATAGCACTCATATGGCCGAGATAGATCCAAAGCAAGCAGCACAATTCATACAACTAACTCAACTGAGGGTGACGGATATAATGGGAATTAAATCTTTGCTAAACCACATTTTGAATACTACGCCAAACGCTTGGATTGAACGAGACACTTTTCTCGCTTTCTTCAATTTAGCTCGAACATTAAGCTACGAGATGTTCATCTTATTGGTTCTTGGACATCCATTTTTGAAGACTAGTGATGAAGCAAGAGTCAAGACATCTTTCGACATTTTACACGTCAGAGATTGCAATGAGGAAAAAAGATGGGAGTTTCATCTCGCTTTGGGGGATCCAAAATTTGGCAGGTATTACCCTTGGAATGAGGTGGCTATGAGCGATCGGTTGAAAGAAGTTTATGATTACGACTATGGGGACTGGTCATCTAACTACCAGGGGCATAGCAGCGTGAGCCTCCTAATTTTCTTAAGGAATGTATATTGGCATCCCAAAACTAGCATGGAGGCATACGATGCTGAGATTAGGACTCTATATCCCGATTTTCTTAATCGTGCTTATGAGGCGGCATGCAGAATATTTGCGGTTGAAGTGACGTCACTTGTAGATTTGGATATAGAGAAGCAGCACGTACAGAATCAAAATGTTGTACCCGGACGTGGCAGAGGCAGAGGCAGAGTTGGCGGACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

421

Amino Acids

49.13

Weight (kDa)

6.68

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1172
Acc36I	ACCTGC	1 cut(s)	912
AccB7I	CCANNNNNTGG	1 cut(s)	917
AccBSI	CCGCTC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	4 cut(s)	116, 1139, 1157, 1257
AclWI	GGATC	4 cut(s)	78, 599, 902, 915
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	4 cut(s)	194, 332, 362, 914
AcyI	GRCGYC	1 cut(s)	1169
AfaI	GTAC	2 cut(s)	1206, 1224
AfiI	CCNNNNNNNGG	2 cut(s)	917, 1232
AflII	CTTAAG	2 cut(s)	283, 1042
AflIII	ACRYGT	1 cut(s)	853
AgsI	TTSAA	8 cut(s)	35, 239, 694, 719, 745, 808, 964, 1163
AhlI	ACTAGT	1 cut(s)	812
AjiI	CACGTC	2 cut(s)	856, 1232
AjnI	CCWGG	1 cut(s)	1008
AluBI	AGCT	7 cut(s)	254, 276, 307, 321, 528, 752, 765
AluI	AGCT	7 cut(s)	254, 276, 307, 321, 528, 752, 765
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	4 cut(s)	78, 599, 902, 915
AoxI	GGCC	1 cut(s)	594
ApeKI	GCWGC	4 cut(s)	528, 617, 1020, 1198
ApoI	RAATTY	4 cut(s)	194, 332, 362, 914
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	1227
AsuHPI	GGTGA	2 cut(s)	568, 661
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	907
BbsI	GAAGAC	2 cut(s)	246, 815
BbvI	GCAGC	4 cut(s)	515, 629, 1032, 1210
BccI	CCATC	2 cut(s)	378, 876
BciT130I	CCWGG	1 cut(s)	1010
BcnI	CCSGG	1 cut(s)	1227
BcoDI	GTCTC	1 cut(s)	717
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	4 cut(s)	6, 377, 813, 1071
BfrI	CTTAAG	2 cut(s)	283, 1042
BfuAI	ACCTGC	1 cut(s)	912
BisI	GCNGC	5 cut(s)	529, 618, 1021, 1140, 1199
BlsI	GCNGC	5 cut(s)	530, 619, 1022, 1141, 1200
Bme1390I	CCNGG	2 cut(s)	1010, 1227
Bme18I	GGWCC	1 cut(s)	520
BmgBI	CACGTC	2 cut(s)	856, 1232
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	909
BmrFI	CCNGG	2 cut(s)	1010, 1227
BmsI	GCATC	3 cut(s)	370, 1069, 1078
BpiI	GAAGAC	2 cut(s)	246, 815
Bpu14I	TTCGAA	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	1227
BsaAI	YACGTR	1 cut(s)	1204
BsaBI	GATNNNNATC	1 cut(s)	776
BsaHI	GRCGYC	1 cut(s)	1169
BsaJI	CCNNGG	2 cut(s)	932, 1009
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	2 cut(s)	917, 1232
Bse1I	ACTGG	1 cut(s)	998
Bse3DI	GCAATG	1 cut(s)	874
Bse8I	GATNNNNATC	1 cut(s)	776
BseBI	CCWGG	1 cut(s)	1010
BseDI	CCNNGG	2 cut(s)	932, 1009
BseGI	GGATG	3 cut(s)	172, 796, 1060
BseJI	GATNNNNATC	1 cut(s)	776
BseLI	CCNNNNNNNGG	2 cut(s)	917, 1232
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	3 cut(s)	432, 635, 1083
BseNI	ACTGG	1 cut(s)	998
BseXI	GCAGC	4 cut(s)	515, 629, 1032, 1210
BseYI	CCCAGC	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	958
BshFI	GGCC	1 cut(s)	596
BsiEI	CGRYCG	1 cut(s)	958
BsiSI	CCGG	2 cut(s)	398, 1227
BslFI	GGGAC	1 cut(s)	1004
BslI	CCNNNNNNNGG	2 cut(s)	917, 1232
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	1004
BsnI	GGCC	1 cut(s)	596
Bsp119I	TTCGAA	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	83, 421, 604, 907, 955
BspACI	CCGC	4 cut(s)	116, 1139, 1157, 1257
BspANI	GGCC	1 cut(s)	596
BspCNI	CTCAG	3 cut(s)	433, 636, 1084
BspHI	TCATGA	2 cut(s)	120, 424
BspLI	GGNNCC	1 cut(s)	909
BspMI	ACCTGC	1 cut(s)	912
BspPI	GGATC	4 cut(s)	78, 599, 902, 915
BspT104I	TTCGAA	1 cut(s)	336
BspTI	CTTAAG	2 cut(s)	283, 1042
BsrBI	CCGCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	874
BsrI	ACTGG	1 cut(s)	998
BssECI	CCNNGG	2 cut(s)	932, 1009
BssMI	GATC	5 cut(s)	83, 421, 604, 907, 955
BssNI	GRCGYC	1 cut(s)	1169
BssT1I	CCWWGG	1 cut(s)	932
Bst2UI	CCWGG	1 cut(s)	1010
Bst6I	CTCTTC	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	1169
BstAFI	CTTAAG	2 cut(s)	283, 1042
BstAPI	GCANNNNNTGC	1 cut(s)	1088
BstBAI	YACGTR	1 cut(s)	1204
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	578, 615, 1144
BstDEI	CTNAG	4 cut(s)	22, 441, 644, 1092
BstF5I	GGATG	3 cut(s)	172, 796, 1060
BstKTI	GATC	5 cut(s)	86, 424, 607, 910, 958
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	5 cut(s)	83, 421, 604, 907, 955
BstMCI	CGRYCG	1 cut(s)	958
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 105, 582, 1026, 1088, 1136, 1254
BstNI	CCWGG	1 cut(s)	1010
BstNSI	RCATGY	1 cut(s)	1146
BstSCI	CCNGG	2 cut(s)	1008, 1225
BstV1I	GCAGC	4 cut(s)	515, 629, 1032, 1210
BstV2I	GAAGAC	2 cut(s)	246, 815
BstX2I	RGATCY	2 cut(s)	604, 907
BstXI	CCANNNNNNTGG	1 cut(s)	711
BstYI	RGATCY	2 cut(s)	604, 907
BsuRI	GGCC	1 cut(s)	596
BtrI	CACGTC	2 cut(s)	856, 1232
BtsCI	GGATG	3 cut(s)	172, 796, 1060
BveI	ACCTGC	1 cut(s)	912
Cac8I	GCNNGC	3 cut(s)	578, 615, 1144
CciI	TCATGA	2 cut(s)	120, 424
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	1205, 1223
CviAII	CATG	5 cut(s)	121, 136, 425, 1075, 1143
CviQI	GTAC	2 cut(s)	1205, 1223
DdeI	CTNAG	4 cut(s)	22, 441, 644, 1092
DpnI	GATC	5 cut(s)	85, 423, 606, 909, 957
DpnII	GATC	5 cut(s)	83, 421, 604, 907, 955
DraI	TTTAAA	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	932
Eco47I	GGWCC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	1008
EcoT14I	CCWWGG	1 cut(s)	932
ErhI	CCWWGG	1 cut(s)	932
FaeI	CATG	5 cut(s)	124, 139, 428, 1078, 1146
FaqI	GGGAC	1 cut(s)	1004
FatI	CATG	5 cut(s)	120, 135, 424, 1074, 1142
FauI	CCCGC	1 cut(s)	123
FauNDI	CATATG	1 cut(s)	591
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	529, 618, 1021, 1140, 1199
FokI	GGATG	3 cut(s)	179, 783, 1047
Fsp4HI	GCNGC	5 cut(s)	529, 618, 1021, 1140, 1199
FspBI	CTAG	4 cut(s)	6, 377, 813, 1071
GluI	GCNGC	5 cut(s)	529, 618, 1021, 1140, 1199
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	596
HapII	CCGG	2 cut(s)	398, 1227
Hin1I	GRCGYC	1 cut(s)	1169
Hin1II	CATG	5 cut(s)	124, 139, 428, 1078, 1146
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	5 cut(s)	26, 477, 828, 1102, 1210
HpaII	CCGG	2 cut(s)	398, 1227
HphI	GGTGA	2 cut(s)	568, 661
Hpy166II	GTNNAC	2 cut(s)	11, 130
Hpy188I	TCNGA	2 cut(s)	205, 860
Hpy188III	TCNNGA	5 cut(s)	121, 377, 425, 832, 1112
Hpy8I	GTNNAC	2 cut(s)	11, 130
Hpy99I	CGWCG	2 cut(s)	81, 84
HpyAV	CCTTC	4 cut(s)	262, 332, 462, 467
HpyCH4IV	ACGT	4 cut(s)	855, 1169, 1203, 1231
HpyCH4V	TGCA	5 cut(s)	139, 296, 531, 867, 1146
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 105, 582, 1026, 1088, 1136, 1254
HpyF3I	CTNAG	4 cut(s)	22, 441, 644, 1092
HpySE526I	ACGT	4 cut(s)	855, 1169, 1203, 1231
Hsp92I	GRCGYC	1 cut(s)	1169
Hsp92II	CATG	5 cut(s)	124, 139, 428, 1078, 1146
Kzo9I	GATC	5 cut(s)	83, 421, 604, 907, 955
LpnPI	CCDG	9 cut(s)	100, 109, 118, 411, 907, 979, 995, 1022, 1240
Lsp1109I	GCAGC	4 cut(s)	515, 629, 1032, 1210
LweI	GCATC	3 cut(s)	370, 1069, 1078
MaeI	CTAG	4 cut(s)	6, 377, 813, 1071
MaeII	ACGT	4 cut(s)	855, 1169, 1203, 1231
MaeIII	GTNAC	3 cut(s)	649, 1165, 1170
MalI	GATC	5 cut(s)	85, 423, 606, 909, 957
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	5 cut(s)	83, 421, 604, 907, 955
MboII	GAAGA	7 cut(s)	192, 221, 251, 271, 365, 733, 820
MflI	RGATCY	2 cut(s)	604, 907
MlyI	GAGTC	2 cut(s)	837, 1096
MmeI	TCCRAC	1 cut(s)	323
MseI	TTAA	6 cut(s)	284, 302, 669, 761, 1043, 1122
MslI	CAYNNNNRTG	1 cut(s)	590
MspCI	CTTAAG	2 cut(s)	283, 1042
MspI	CCGG	2 cut(s)	398, 1227
MspR9I	CCNGG	2 cut(s)	1010, 1227
MvaI	CCWGG	1 cut(s)	1010
MwoI	GCNNNNNNNGC	7 cut(s)	96, 105, 582, 1026, 1088, 1136, 1254
NciI	CCSGG	1 cut(s)	1227
NdeI	CATATG	1 cut(s)	591
NdeII	GATC	5 cut(s)	83, 421, 604, 907, 955
NlaIII	CATG	5 cut(s)	124, 139, 428, 1078, 1146
NlaIV	GGNNCC	1 cut(s)	909
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	3 cut(s)	649, 1165, 1170
NspI	RCATGY	1 cut(s)	1146
NspV	TTCGAA	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	1146
PagI	TCATGA	2 cut(s)	120, 424
PfeI	GAWTC	3 cut(s)	26, 477, 1210
PflMI	CCANNNNNTGG	1 cut(s)	917
PkrI	GCNGC	5 cut(s)	530, 619, 1022, 1141, 1200
Ple19I	CGATCG	1 cut(s)	958
PleI	GAGTC	2 cut(s)	836, 1096
PpsI	GAGTC	2 cut(s)	836, 1096
Ppu21I	YACGTR	1 cut(s)	1204
Psp6I	CCWGG	1 cut(s)	1008
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	1008
PspN4I	GGNNCC	1 cut(s)	909
PspPI	GGNCC	1 cut(s)	520
PsuI	RGATCY	2 cut(s)	604, 907
PvuI	CGATCG	1 cut(s)	958
RsaI	GTAC	2 cut(s)	1206, 1224
RsaNI	GTAC	2 cut(s)	1205, 1223
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	6 cut(s)	284, 302, 669, 761, 1043, 1122
SatI	GCNGC	5 cut(s)	529, 618, 1021, 1140, 1199
Sau3AI	GATC	5 cut(s)	83, 421, 604, 907, 955
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	2 cut(s)	837, 1096
ScrFI	CCNGG	2 cut(s)	1010, 1227
SfaNI	GCATC	3 cut(s)	370, 1069, 1078
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	283, 1042
SmoI	CTYRAG	2 cut(s)	283, 1042
SpeI	ACTAGT	1 cut(s)	812
SphI	GCATGC	1 cut(s)	1146
SsiI	CCGC	4 cut(s)	116, 1139, 1157, 1257
SspI	AATATT	2 cut(s)	53, 1152
SspMI	CTAG	4 cut(s)	6, 377, 813, 1071
StyD4I	CCNGG	2 cut(s)	1008, 1225
StyI	CCWWGG	1 cut(s)	932
TaiI	ACGT	4 cut(s)	858, 1172, 1206, 1234
TaqI	TCGA	5 cut(s)	76, 336, 366, 754, 843
TauI	GCSGC	1 cut(s)	1142
TfiI	GAWTC	3 cut(s)	26, 477, 1210
Tru1I	TTAA	6 cut(s)	284, 302, 669, 761, 1043, 1122
Tru9I	TTAA	6 cut(s)	284, 302, 669, 761, 1043, 1122
TseFI	GTSAC	3 cut(s)	649, 1165, 1170
TseI	GCWGC	4 cut(s)	528, 617, 1020, 1198
Tsp45I	GTSAC	3 cut(s)	649, 1165, 1170
TspDTI	ATGAA	8 cut(s)	137, 141, 222, 272, 616, 766, 834, 881
TspGWI	ACGGA	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	917
Vha464I	CTTAAG	2 cut(s)	283, 1042
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	4 cut(s)	194, 332, 362, 914
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	1146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1072
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	4 cut(s)	6, 377, 813, 1071
ZraI	GACGTC	1 cut(s)	1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.