RLG00000002639

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
37384506 .. 37388097
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002639

Sequence Viewer

Length: 1329 bp
ATGACGAAAAACTCGTCGAAGCCCAAGTTCTGGTCTCGCAGCAAGTCCCAAATTGCGCCGGATGATGCCGCAGCAGCGGTCGGGCTAATACTAAACAAGAAGCTCGAGAATACCGACAAGACAATTGCGCCGAAAGCTGCCCCGGAAACGCAAGTTGCTCCGGAAGCTGTGCCGGAAGTCGCTCCGGAATCTCCCCGGAAAGTTGCTCCGGAATCTCCCCGGAAAGTTTCTCCGGAATCTCCCCGGAAAGTTGCTCCGGAAGCTGTGCCGGAATCTTCCCCGGAAGTTGCGCCGGAAGATGCCCCGGAACTGGGTTTAATCAGGATAATACAAAAGCAGAAGCTCGAGAATACCGACGAGAACACCGTTCTGGGAGTCTTCATACAGGGGTTCGAGCTCCAGTACAAGAGTGGCAGCCCTTATCACAAGGGCACAATTACTTTTCAGAATGGTAGCACAAAAGATGTGTCTTTCATTGCCCTTGATATAGCTTCCGGCAAGACAATTAATGATATATACACTCGTAACAGAATTATCTGTGATGAAAGGGTTCTTATACCCCTGTTTGTCATGTATTGTGAGGATATTTCCAAGTACATTATTTGCTACGACCAGTTCCACTGCTCTTTAAACGATTGGCTGCCAAGGCGGTTCAATTTCAATTCTGTTAAAGATGCACATGGCTTGCCTCACTCAGATATTAAGACAGAGATCAGCAAGATGTTGAACGCTGTGAATAACATTCACAAGAGGGGACTGCTTCATCTATCACTCTCTGACATCTCTAGTTATGTTGTTATTGACAACAAATGGTATATTATCAATATTCGTGGCAGCCTTGAAAAATCCGATCCAGAATCAAAGTCGAAGGTCATAAGTGATTTTTGTGATTTTCGTGACATGCTTAAGAACTATGTTCTCTTACACCCTTCATGGCCTGAAAGGGAATACTTTTTCGAAACATTTGCTCGGACCAATATTTCTCCCAACCGACTTGTTCCAATTCTATTGGATCATGTCTTCACAAAATCTTCACGTGATCGACTTCAAATGTTTTCAGAGATTTATCATGGATGGAAGGACCATAATCGCAACTGCCAGATGCTATACAATGCCATTCGAAATGGATTGTTCGACCAATATACAAATGGAGGATGGGATAAGGATAGGGTTCATATGGGCTCTGTTTTTTATGGCCAGGATTTTTGGAAAAGCTGCTTCATTACTATTGAGAATCCAGCCAGCAAGAGGGAGATCACTTGCAATGACAAACGGGAGACTTTTTTAAGGGAAGGAAAAGGTCAACTTCTTGAAGACCGGCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

443

Amino Acids

50.57

Weight (kDa)

7.6

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 30
AccIII TCCGGA 5 cut(s) 160, 184, 208, 232, 256
AciI CCGC 3 cut(s) 69, 77, 649
AclWI GGATC 2 cut(s) 845, 1020
AcoI YGGCCR 1 cut(s) 1195
AcvI CACGTG 1 cut(s) 1037
AfaI GTAC 2 cut(s) 404, 596
AfiI CCNNNNNNNGG 4 cut(s) 30, 310, 311, 1248
AflII CTTAAG 1 cut(s) 905
AgsI TTSAA 6 cut(s) 655, 661, 727, 842, 1049, 1313
AjnI CCWGG 1 cut(s) 1197
AluBI AGCT 8 cut(s) 103, 137, 167, 263, 343, 397, 491, 1215
AluI AGCT 8 cut(s) 103, 137, 167, 263, 343, 397, 491, 1215
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 39, 1271
AlwI GGATC 2 cut(s) 845, 1020
Ama87I CYCGRG 2 cut(s) 104, 344
Aor13HI TCCGGA 5 cut(s) 160, 184, 208, 232, 256
AoxI GGCC 2 cut(s) 935, 1195
ApeKI GCWGC 8 cut(s) 39, 71, 74, 137, 414, 640, 834, 1215
ArsI GACNNNNNNTTYG 3 cut(s) 31, 452, 484
AseI ATTAAT 1 cut(s) 507
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 3 cut(s) 58, 130, 292
AspS9I GGNCC 2 cut(s) 972, 1081
AsuC2I CCSGG 6 cut(s) 143, 196, 220, 244, 281, 305
AsuII TTCGAA 2 cut(s) 957, 1120
AvaI CYCGRG 2 cut(s) 104, 344
AvaII GGWCC 2 cut(s) 972, 1081
BaeGI GKGCMC 1 cut(s) 434
BalI TGGCCA 1 cut(s) 1197
BanII GRGCYC 2 cut(s) 399, 1184
BbrPI CACGTG 1 cut(s) 1037
BbsI GAAGAC 3 cut(s) 370, 1012, 1320
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 8 cut(s) 51, 83, 86, 124, 426, 627, 846, 1202
BccI CCATC 2 cut(s) 1068, 1149
BcgI CGANNNNNNTGC 2 cut(s) 947, 981
BciT130I CCWGG 1 cut(s) 1199
BcnI CCSGG 6 cut(s) 143, 196, 220, 244, 281, 305
BcoDI GTCTC 2 cut(s) 39, 1271
BfaI CTAG 1 cut(s) 786
BfrI CTTAAG 1 cut(s) 905
BisI GCNGC 9 cut(s) 40, 69, 72, 75, 138, 415, 641, 835, 1216
BlsI GCNGC 9 cut(s) 41, 70, 73, 76, 139, 416, 642, 836, 1217
Bme1390I CCNGG 7 cut(s) 143, 196, 220, 244, 281, 305, 1199
Bme18I GGWCC 2 cut(s) 972, 1081
BmeT110I CYCGRG 2 cut(s) 104, 344
BmgT120I GGNCC 2 cut(s) 972, 1081
BmrFI CCNGG 7 cut(s) 143, 196, 220, 244, 281, 305, 1199
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 4 cut(s) 55, 289, 664, 1092
BmuI ACTGGG 1 cut(s) 320
BpiI GAAGAC 3 cut(s) 370, 1012, 1320
BpmI CTGGAG 1 cut(s) 383
Bpu14I TTCGAA 2 cut(s) 957, 1120
BpuMI CCSGG 6 cut(s) 143, 196, 220, 244, 281, 305
BsaAI YACGTR 1 cut(s) 1037
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 7 cut(s) 141, 194, 218, 242, 279, 303, 644
BsaWI WCCGGW 5 cut(s) 160, 184, 208, 232, 256
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 310, 311, 1248
Bse118I RCCGGY 1 cut(s) 1317
Bse1I ACTGG 3 cut(s) 315, 400, 613
Bse3DI GCAATG 2 cut(s) 474, 1270
BseAI TCCGGA 5 cut(s) 160, 184, 208, 232, 256
BseBI CCWGG 1 cut(s) 1199
BseDI CCNNGG 7 cut(s) 141, 194, 218, 242, 279, 303, 644
BseGI GGATG 3 cut(s) 67, 1079, 1160
BseLI CCNNNNNNNGG 4 cut(s) 30, 310, 311, 1248
BseMI GCAATG 2 cut(s) 474, 1270
BseMII CTCAG 1 cut(s) 708
BseNI ACTGG 3 cut(s) 315, 400, 613
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 8 cut(s) 51, 83, 86, 124, 426, 627, 846, 1202
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 2 cut(s) 937, 1197
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 399
BsiHKCI CYCGRG 2 cut(s) 104, 344
BslFI GGGAC 2 cut(s) 31, 768
BslI CCNNNNNNNGG 4 cut(s) 30, 310, 311, 1248
BsmAI GTCTC 2 cut(s) 39, 1271
BsmFI GGGAC 2 cut(s) 31, 768
BsnI GGCC 2 cut(s) 937, 1197
Bso31I GGTCTC 1 cut(s) 39
BsoBI CYCGRG 2 cut(s) 104, 344
Bsp119I TTCGAA 2 cut(s) 957, 1120
Bsp1286I GDGCHC 3 cut(s) 399, 434, 1184
Bsp13I TCCGGA 5 cut(s) 160, 184, 208, 232, 256
Bsp143I GATC 5 cut(s) 711, 850, 1012, 1039, 1254
BspACI CCGC 3 cut(s) 69, 77, 649
BspANI GGCC 2 cut(s) 937, 1197
BspCNI CTCAG 1 cut(s) 707
BspEI TCCGGA 5 cut(s) 160, 184, 208, 232, 256
BspPI GGATC 2 cut(s) 845, 1020
BspT104I TTCGAA 2 cut(s) 957, 1120
BspTI CTTAAG 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 39
BsrDI GCAATG 2 cut(s) 474, 1270
BsrFI RCCGGY 1 cut(s) 1317
BsrI ACTGG 3 cut(s) 315, 400, 613
BssAI RCCGGY 1 cut(s) 1317
BssECI CCNNGG 7 cut(s) 141, 194, 218, 242, 279, 303, 644
BssMI GATC 5 cut(s) 711, 850, 1012, 1039, 1254
BssT1I CCWWGG 1 cut(s) 644
Bst2UI CCWGG 1 cut(s) 1199
Bst4CI ACNGT 1 cut(s) 367
BstAFI CTTAAG 1 cut(s) 905
BstBAI YACGTR 1 cut(s) 1037
BstBI TTCGAA 2 cut(s) 957, 1120
BstC8I GCNNGC 2 cut(s) 686, 1243
BstDEI CTNAG 1 cut(s) 694
BstF5I GGATG 3 cut(s) 67, 1079, 1160
BstHHI GCGC 3 cut(s) 58, 130, 292
BstKTI GATC 5 cut(s) 714, 853, 1015, 1042, 1257
BstMAI GTCTC 2 cut(s) 39, 1271
BstMBI GATC 5 cut(s) 711, 850, 1012, 1039, 1254
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 5 cut(s) 74, 134, 164, 260, 646
BstNI CCWGG 1 cut(s) 1199
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 7 cut(s) 141, 194, 218, 242, 279, 303, 1197
BstSLI GKGCMC 1 cut(s) 434
BstV1I GCAGC 8 cut(s) 51, 83, 86, 124, 426, 627, 846, 1202
BstV2I GAAGAC 3 cut(s) 370, 1012, 1320
BsuRI GGCC 2 cut(s) 937, 1197
BtsCI GGATG 3 cut(s) 67, 1079, 1160
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 686, 1243
CfoI GCGC 3 cut(s) 58, 130, 292
Cfr10I RCCGGY 1 cut(s) 1317
Cfr13I GGNCC 2 cut(s) 972, 1081
Csp6I GTAC 2 cut(s) 403, 595
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 6 cut(s) 571, 680, 901, 933, 1016, 1070
CviQI GTAC 2 cut(s) 403, 595
DdeI CTNAG 1 cut(s) 694
DpnI GATC 5 cut(s) 713, 852, 1014, 1041, 1256
DpnII GATC 5 cut(s) 711, 850, 1012, 1039, 1254
DraI TTTAAA 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 1195
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 644
Eco24I GRGCYC 2 cut(s) 399, 1184
Eco31I GGTCTC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 972, 1081
Eco53kI GAGCTC 1 cut(s) 397
Eco72I CACGTG 1 cut(s) 1037
Eco88I CYCGRG 2 cut(s) 104, 344
EcoICRI GAGCTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 1197
EcoT14I CCWWGG 1 cut(s) 644
EcoT38I GRGCYC 2 cut(s) 399, 1184
ErhI CCWWGG 1 cut(s) 644
FaeI CATG 6 cut(s) 574, 683, 904, 936, 1019, 1073
FalI AAGNNNNNCTT 2 cut(s) 1290, 1322
FaqI GGGAC 2 cut(s) 31, 768
FatI CATG 6 cut(s) 570, 679, 900, 932, 1015, 1069
FauNDI CATATG 1 cut(s) 1176
Fnu4HI GCNGC 9 cut(s) 40, 69, 72, 75, 138, 415, 641, 835, 1216
FokI GGATG 3 cut(s) 74, 1086, 1167
FriOI GRGCYC 2 cut(s) 399, 1184
Fsp4HI GCNGC 9 cut(s) 40, 69, 72, 75, 138, 415, 641, 835, 1216
FspBI CTAG 1 cut(s) 786
GlaI GCGC 3 cut(s) 57, 129, 291
GluI GCNGC 9 cut(s) 40, 69, 72, 75, 138, 415, 641, 835, 1216
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 2 cut(s) 937, 1197
HhaI GCGC 3 cut(s) 58, 130, 292
Hin1II CATG 6 cut(s) 574, 683, 904, 936, 1019, 1073
Hin6I GCGC 3 cut(s) 56, 128, 290
HinP1I GCGC 3 cut(s) 56, 128, 290
HincII GTYRAC 1 cut(s) 1304
HindII GTYRAC 1 cut(s) 1304
HinfI GANTC 7 cut(s) 188, 212, 236, 272, 375, 857, 1234
Hpy166II GTNNAC 1 cut(s) 1304
Hpy188I TCNGA 6 cut(s) 447, 697, 778, 850, 972, 1060
Hpy8I GTNNAC 1 cut(s) 1304
Hpy99I CGWCG 2 cut(s) 19, 359
HpyAV CCTTC 4 cut(s) 862, 939, 1072, 1286
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 1036
HpyCH4V TGCA 2 cut(s) 677, 1263
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 134, 164, 260, 646
HpyF3I CTNAG 1 cut(s) 694
HpySE526I ACGT 1 cut(s) 1036
Hsp92II CATG 6 cut(s) 574, 683, 904, 936, 1019, 1073
HspAI GCGC 3 cut(s) 56, 128, 290
Kpn2I TCCGGA 5 cut(s) 160, 184, 208, 232, 256
Kzo9I GATC 5 cut(s) 711, 850, 1012, 1039, 1254
LmnI GCTCC 5 cut(s) 163, 187, 211, 259, 402
Lsp1109I GCAGC 8 cut(s) 51, 83, 86, 124, 426, 627, 846, 1202
LweI GCATC 4 cut(s) 55, 289, 664, 1092
MaeI CTAG 1 cut(s) 786
MaeII ACGT 1 cut(s) 1036
MaeIII GTNAC 2 cut(s) 524, 896
MalI GATC 5 cut(s) 713, 852, 1014, 1041, 1256
MboI GATC 5 cut(s) 711, 850, 1012, 1039, 1254
MboII GAAGA 6 cut(s) 267, 308, 370, 1012, 1023, 1325
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 3 cut(s) 399, 434, 1184
MlsI TGGCCA 1 cut(s) 1197
MluCI AATT 8 cut(s) 51, 123, 435, 504, 531, 655, 661, 1002
MluNI TGGCCA 1 cut(s) 1197
MlyI GAGTC 1 cut(s) 384
MnlI CCTC 5 cut(s) 574, 699, 744, 1145, 1242
Mox20I TGGCCA 1 cut(s) 1197
MroI TCCGGA 5 cut(s) 160, 184, 208, 232, 256
MroXI GAANNNNTTC 1 cut(s) 549
MscI TGGCCA 1 cut(s) 1197
MseI TTAA 7 cut(s) 317, 507, 629, 669, 702, 906, 1286
Msp20I TGGCCA 1 cut(s) 1197
MspA1I CMGCKG 1 cut(s) 77
MspCI CTTAAG 1 cut(s) 905
MspR9I CCNGG 7 cut(s) 143, 196, 220, 244, 281, 305, 1199
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 1199
MwoI GCNNNNNNNGC 5 cut(s) 74, 134, 164, 260, 646
NciI CCSGG 6 cut(s) 143, 196, 220, 244, 281, 305
NdeI CATATG 1 cut(s) 1176
NdeII GATC 5 cut(s) 711, 850, 1012, 1039, 1254
NlaIII CATG 6 cut(s) 574, 683, 904, 936, 1019, 1073
NmuCI GTSAC 1 cut(s) 896
NspI RCATGY 1 cut(s) 904
NspV TTCGAA 2 cut(s) 957, 1120
PaeR7I CTCGAG 2 cut(s) 104, 344
PcsI WCGNNNNNNNCGW 4 cut(s) 11, 111, 351, 363
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 6 cut(s) 188, 212, 236, 272, 857, 1234
PflMI CCANNNNNTGG 1 cut(s) 30
PkrI GCNGC 9 cut(s) 41, 70, 73, 76, 139, 416, 642, 836, 1217
PleI GAGTC 1 cut(s) 383
PmaCI CACGTG 1 cut(s) 1037
PmlI CACGTG 1 cut(s) 1037
PpsI GAGTC 1 cut(s) 383
Ppu21I YACGTR 1 cut(s) 1037
PshBI ATTAAT 1 cut(s) 507
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 1197
PspCI CACGTG 1 cut(s) 1037
PspGI CCWGG 1 cut(s) 1197
PspPI GGNCC 2 cut(s) 972, 1081
RsaI GTAC 2 cut(s) 404, 596
RsaNI GTAC 2 cut(s) 403, 595
SacI GAGCTC 1 cut(s) 399
SaqAI TTAA 7 cut(s) 317, 507, 629, 669, 702, 906, 1286
SatI GCNGC 9 cut(s) 40, 69, 72, 75, 138, 415, 641, 835, 1216
Sau3AI GATC 5 cut(s) 711, 850, 1012, 1039, 1254
Sau96I GGNCC 2 cut(s) 972, 1081
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 7 cut(s) 143, 196, 220, 244, 281, 305, 1199
SduI GDGCHC 3 cut(s) 399, 434, 1184
SfaNI GCATC 4 cut(s) 55, 289, 664, 1092
Sfr274I CTCGAG 2 cut(s) 104, 344
SfuI TTCGAA 2 cut(s) 957, 1120
SinI GGWCC 2 cut(s) 972, 1081
SlaI CTCGAG 2 cut(s) 104, 344
SmlI CTYRAG 3 cut(s) 104, 344, 905
SmoI CTYRAG 3 cut(s) 104, 344, 905
Sse9I AATT 8 cut(s) 51, 123, 435, 504, 531, 655, 661, 1002
SsiI CCGC 3 cut(s) 69, 77, 649
SspI AATATT 2 cut(s) 826, 979
SspMI CTAG 1 cut(s) 786
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 7 cut(s) 141, 194, 218, 242, 279, 303, 1197
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 1 cut(s) 1039
TaqI TCGA 9 cut(s) 17, 105, 345, 393, 866, 957, 1042, 1120, 1134
TasI AATT 8 cut(s) 51, 123, 435, 504, 531, 655, 661, 1002
TatI WGTACW 2 cut(s) 402, 594
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 6 cut(s) 188, 212, 236, 272, 857, 1234
Tru1I TTAA 7 cut(s) 317, 507, 629, 669, 702, 906, 1286
Tru9I TTAA 7 cut(s) 317, 507, 629, 669, 702, 906, 1286
TscAI CASTG 1 cut(s) 626
TseFI GTSAC 1 cut(s) 896
TseI GCWGC 8 cut(s) 39, 71, 74, 137, 414, 640, 834, 1215
Tsp45I GTSAC 1 cut(s) 896
TspDTI ATGAA 7 cut(s) 370, 463, 558, 752, 921, 1163, 1210
TspRI CASTG 1 cut(s) 626
Van91I CCANNNNNTGG 1 cut(s) 30
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 2 cut(s) 972, 1081
VspI ATTAAT 1 cut(s) 507
XceI RCATGY 1 cut(s) 904
XcmI CCANNNNNNNNNTGG 2 cut(s) 407, 1145
XhoI CTCGAG 2 cut(s) 104, 344
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.