Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

26703818 .. 26705646

Gene Structure 1829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG284200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCATGCAAGTGCCTCAAAACGACACTTGACTGACTTCAGTCTCTTCGTCAAACAGGGGGTTATGCTGAAACCCTCTCCACCTAAACCCATGATCTCCAACATCCAAACTGCGCCGGAAGTTGCGCCGGAAGAGGTTCTCCTCACGAAAATATTACAGAAAAAGCTCGAGAATACCGATCAGAATACCGTTCTCGGAGCCTCCATAATGGAGTACCGGCTTCATTACATCAGTGGGAGCCCTTATTACAACGGCACAATTATTTTTCAGAACGGTGACACAAAAGAGGTGTCTTTTATTCCCTTTGATAAAGCAGAAGGCAAGAAAGTTTGTGATATATACACTTATAGCACAAATATCTGTGATGAAAGGGTTCTTAGGCCCTGGTACATTTCGTATTGTGAAGATATTTGCGAGCACATTATTTGCTATGACCGATTCCACTACTCTTTAAGATATTGGCTGCCAAGGTGGACCAAATCCAATAGTGTTAAAGATGCATATGGTTTGCCTCACTCAGTAATTAAGACACAAATCAGCAAGCTATTGAAATCTGTGAATAACATTCACAAGAGCGGATTGCTTCACCTATCACTCTCTGATATCTCTAACTATGTTGTTATTGACAACAATTGGTATATTATTAATGTCGGTGGCAATCTTAAGACTCTTAACCTATCCAATAGACAGCAGATGGTCATAAAGGACTTCCAAAATTTTGGTAACATGCTTGAGAAAAATGTTCTCTTAGACACTTCATGGCGAGAAAGAAATGACTTCTTAAACACATTTGCTAATAATGTTTCTCCTAATCGACTTGTCCTGATTCTATTGGACAATGTATTCACAAAATCTTCATATGATCGACTTCAAATGTTTTCAAAAATTCATCACGAATGGAAGGACCGTAGTCGCAATTGCAATATGTTAAATAATGCCATTTCAAATGGAGTGTTTAACTGTTATATTACTAATGGAGGATGGGACAAGGTTCCCATGGGCAATGTTTTGTCTCAAGTTTACCAGTTTTCCAACAACAAGTACAATGGACAACAAATAACGAGCTTATTGAAGTTTTGCCGCAATGTTTTCGAACATTATTACCAATATACTGGTAATGTAAAGATCATTGAGAATGAGATGAGACAATTATGGCCTGGATTTTTGGAAAGACTACTTTATTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

396

Amino Acids

46.26

Weight (kDa)

8.95

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	576
AciI	CCGC	2 cut(s)	576, 1081
AcsI	RAATTY	2 cut(s)	715, 885
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	3 cut(s)	215, 389, 1043
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	5 cut(s)	550, 872, 882, 945, 1072
AjnI	CCWGG	2 cut(s)	383, 1156
AluBI	AGCT	3 cut(s)	166, 544, 1065
AluI	AGCT	3 cut(s)	166, 544, 1065
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	3 cut(s)	47, 1017, 1138
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	380, 1154
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	2 cut(s)	715, 885
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AseI	ATTAAT	1 cut(s)	645
Asp700I	GAANNNNTTC	2 cut(s)	135, 372
AspLEI	GCGC	2 cut(s)	115, 127
AspS9I	GGNCC	3 cut(s)	381, 474, 904
AsuHPI	GGTGA	2 cut(s)	287, 578
AsuII	TTCGAA	1 cut(s)	1092
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	474, 904
BanII	GRGCYC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	688, 975
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	1072, 1106
BciT130I	CCWGG	2 cut(s)	385, 1158
BcoDI	GTCTC	3 cut(s)	47, 1017, 1138
BfrI	CTTAAG	1 cut(s)	662
BisI	GCNGC	2 cut(s)	464, 1081
BlsI	GCNGC	2 cut(s)	465, 1082
Bme1390I	CCNGG	2 cut(s)	385, 1158
Bme18I	GGWCC	2 cut(s)	474, 904
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	3 cut(s)	381, 474, 904
BmiI	GGNNCC	3 cut(s)	199, 239, 993
BmrFI	CCNGG	2 cut(s)	385, 1158
BmsI	GCATC	1 cut(s)	487
BoxI	GACNNNNGTC	2 cut(s)	39, 909
Bpu14I	TTCGAA	1 cut(s)	1092
BpuEI	CTTGAG	2 cut(s)	752, 999
BsaJI	CCNNGG	3 cut(s)	383, 467, 996
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	1024, 1117
Bse3DI	GCAATG	2 cut(s)	1009, 1090
BseBI	CCWGG	2 cut(s)	385, 1158
BseDI	CCNNGG	3 cut(s)	383, 467, 996
BseGI	GGATG	2 cut(s)	102, 986
BseMI	GCAATG	2 cut(s)	1009, 1090
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	1024, 1117
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	450
BshFI	GGCC	2 cut(s)	382, 1156
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	3 cut(s)	116, 128, 217
BslFI	GGGAC	1 cut(s)	998
BsmAI	GTCTC	3 cut(s)	47, 1017, 1138
BsmFI	GGGAC	1 cut(s)	998
BsnI	GGCC	2 cut(s)	382, 1156
BsoBI	CYCGRG	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	1092
Bsp1286I	GDGCHC	2 cut(s)	242, 420
Bsp143I	GATC	4 cut(s)	93, 178, 862, 1125
Bsp19I	CCATGG	1 cut(s)	996
BspACI	CCGC	2 cut(s)	576, 1081
BspANI	GGCC	2 cut(s)	382, 1156
BspCNI	CTCAG	1 cut(s)	530
BspLI	GGNNCC	3 cut(s)	199, 239, 993
BspT104I	TTCGAA	1 cut(s)	1092
BspTI	CTTAAG	1 cut(s)	662
BsrBI	CCGCTC	1 cut(s)	576
BsrDI	GCAATG	2 cut(s)	1009, 1090
BsrFI	RCCGGY	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	1024, 1117
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	383, 467, 996
BssMI	GATC	4 cut(s)	93, 178, 862, 1125
BssT1I	CCWWGG	2 cut(s)	467, 996
Bst2UI	CCWGG	2 cut(s)	385, 1158
Bst4CI	ACNGT	4 cut(s)	190, 275, 908, 962
Bst6I	CTCTTC	2 cut(s)	50, 126
BstAFI	CTTAAG	1 cut(s)	662
BstBI	TTCGAA	1 cut(s)	1092
BstC8I	GCNNGC	3 cut(s)	6, 416, 542
BstDEI	CTNAG	3 cut(s)	377, 517, 748
BstDSI	CCRYGG	1 cut(s)	996
BstF5I	GGATG	2 cut(s)	102, 986
BstHHI	GCGC	2 cut(s)	115, 127
BstKTI	GATC	4 cut(s)	96, 181, 865, 1128
BstMAI	GTCTC	3 cut(s)	47, 1017, 1138
BstMBI	GATC	4 cut(s)	93, 178, 862, 1125
BstNI	CCWGG	2 cut(s)	385, 1158
BstNSI	RCATGY	2 cut(s)	8, 730
BstPAI	GACNNNNGTC	2 cut(s)	39, 909
BstSCI	CCNGG	2 cut(s)	383, 1156
BstV1I	GCAGC	1 cut(s)	450
BstXI	CCANNNNNNTGG	2 cut(s)	719, 1112
BsuRI	GGCC	2 cut(s)	382, 1156
BtgI	CCRYGG	1 cut(s)	996
BtsCI	GGATG	2 cut(s)	102, 986
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	3 cut(s)	6, 416, 542
CfoI	GCGC	2 cut(s)	115, 127
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	381, 474, 904
Csp6I	GTAC	3 cut(s)	214, 388, 1042
CviAII	CATG	5 cut(s)	5, 91, 727, 759, 997
CviJI	RGCY	9 cut(s)	166, 200, 220, 240, 382, 463, 544, 1065, 1156
CviKI_1	RGCY	9 cut(s)	166, 200, 220, 240, 382, 463, 544, 1065, 1156
CviQI	GTAC	3 cut(s)	214, 388, 1042
DdeI	CTNAG	3 cut(s)	377, 517, 748
DpnI	GATC	4 cut(s)	95, 180, 864, 1127
DpnII	GATC	4 cut(s)	93, 178, 862, 1125
Eam1104I	CTCTTC	2 cut(s)	50, 126
EarI	CTCTTC	2 cut(s)	50, 126
Eco130I	CCWWGG	2 cut(s)	467, 996
Eco24I	GRGCYC	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	2 cut(s)	474, 904
Eco57I	CTGAAG	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	383, 1156
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	2 cut(s)	467, 996
EcoT22I	ATGCAT	2 cut(s)	6, 502
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	2 cut(s)	467, 996
FaeI	CATG	5 cut(s)	8, 94, 730, 762, 1000
FaqI	GGGAC	1 cut(s)	998
FatI	CATG	5 cut(s)	4, 90, 726, 758, 996
FauNDI	CATATG	2 cut(s)	502, 859
Fnu4HI	GCNGC	2 cut(s)	464, 1081
FokI	GGATG	2 cut(s)	89, 993
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	464, 1081
GlaI	GCGC	2 cut(s)	114, 126
GluI	GCNGC	2 cut(s)	464, 1081
HaeIII	GGCC	2 cut(s)	382, 1156
HapII	CCGG	3 cut(s)	116, 128, 217
HhaI	GCGC	2 cut(s)	115, 127
Hin1II	CATG	5 cut(s)	8, 94, 730, 762, 1000
Hin6I	GCGC	2 cut(s)	113, 125
HinP1I	GCGC	2 cut(s)	113, 125
HinfI	GANTC	3 cut(s)	438, 667, 826
HpaII	CCGG	3 cut(s)	116, 128, 217
HphI	GGTGA	2 cut(s)	287, 578
Hpy166II	GTNNAC	2 cut(s)	474, 1021
Hpy188I	TCNGA	4 cut(s)	183, 197, 270, 601
Hpy188III	TCNNGA	4 cut(s)	145, 169, 823, 893
Hpy8I	GTNNAC	2 cut(s)	474, 1021
HpyAV	CCTTC	2 cut(s)	311, 895
HpyCH4III	ACNGT	4 cut(s)	190, 275, 908, 962
HpyCH4V	TGCA	4 cut(s)	4, 8, 500, 921
HpyF3I	CTNAG	3 cut(s)	377, 517, 748
Hsp92II	CATG	5 cut(s)	8, 94, 730, 762, 1000
HspAI	GCGC	2 cut(s)	113, 125
Kzo9I	GATC	4 cut(s)	93, 178, 862, 1125
LmnI	GCTCC	2 cut(s)	197, 237
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	1 cut(s)	487
MaeIII	GTNAC	2 cut(s)	275, 722
MalI	GATC	4 cut(s)	95, 180, 864, 1127
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	4 cut(s)	93, 178, 862, 1125
MboII	GAAGA	4 cut(s)	37, 143, 416, 846
MfeI	CAATTG	2 cut(s)	631, 916
MhlI	GDGCHC	2 cut(s)	242, 420
MluCI	AATT	7 cut(s)	258, 522, 631, 715, 885, 916, 1148
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	2 cut(s)	123, 1056
MnlI	CCTC	8 cut(s)	25, 85, 127, 152, 211, 280, 522, 971
Mph1103I	ATGCAT	2 cut(s)	6, 502
MroXI	GAANNNNTTC	2 cut(s)	135, 372
MseI	TTAA	9 cut(s)	452, 492, 525, 645, 663, 672, 782, 929, 957
MslI	CAYNNNNRTG	1 cut(s)	9
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	3 cut(s)	116, 128, 217
MspR9I	CCNGG	2 cut(s)	385, 1158
MunI	CAATTG	2 cut(s)	631, 916
MvaI	CCWGG	2 cut(s)	385, 1158
NcoI	CCATGG	1 cut(s)	996
NdeI	CATATG	2 cut(s)	502, 859
NdeII	GATC	4 cut(s)	93, 178, 862, 1125
NlaIII	CATG	5 cut(s)	8, 94, 730, 762, 1000
NlaIV	GGNNCC	3 cut(s)	199, 239, 993
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	2 cut(s)	6, 502
NspI	RCATGY	2 cut(s)	8, 730
NspV	TTCGAA	1 cut(s)	1092
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	2 cut(s)	135, 372
PfeI	GAWTC	2 cut(s)	438, 826
PkrI	GCNGC	2 cut(s)	465, 1082
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PshAI	GACNNNNGTC	2 cut(s)	39, 909
PshBI	ATTAAT	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	383, 1156
PspGI	CCWGG	2 cut(s)	383, 1156
PspN4I	GGNNCC	3 cut(s)	199, 239, 993
PspPI	GGNCC	3 cut(s)	381, 474, 904
RsaI	GTAC	3 cut(s)	215, 389, 1043
RsaNI	GTAC	3 cut(s)	214, 388, 1042
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	9 cut(s)	452, 492, 525, 645, 663, 672, 782, 929, 957
SatI	GCNGC	2 cut(s)	464, 1081
Sau3AI	GATC	4 cut(s)	93, 178, 862, 1125
Sau96I	GGNCC	3 cut(s)	381, 474, 904
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	2 cut(s)	385, 1158
SduI	GDGCHC	2 cut(s)	242, 420
SfaNI	GCATC	1 cut(s)	487
Sfr274I	CTCGAG	1 cut(s)	167
SfuI	TTCGAA	1 cut(s)	1092
SinI	GGWCC	2 cut(s)	474, 904
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	4 cut(s)	167, 662, 731, 1014
SmoI	CTYRAG	4 cut(s)	167, 662, 731, 1014
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	7 cut(s)	258, 522, 631, 715, 885, 916, 1148
SsiI	CCGC	2 cut(s)	576, 1081
SspI	AATATT	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	383, 1156
StyI	CCWWGG	2 cut(s)	467, 996
TaaI	ACNGT	4 cut(s)	190, 275, 908, 962
TaqI	TCGA	4 cut(s)	168, 814, 865, 1092
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	7 cut(s)	258, 522, 631, 715, 885, 916, 1148
TatI	WGTACW	1 cut(s)	1041
TauI	GCSGC	1 cut(s)	1083
TfiI	GAWTC	2 cut(s)	438, 826
Tru1I	TTAA	9 cut(s)	452, 492, 525, 645, 663, 672, 782, 929, 957
Tru9I	TTAA	9 cut(s)	452, 492, 525, 645, 663, 672, 782, 929, 957
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	5 cut(s)	212, 381, 747, 846, 878
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	474, 904
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	2 cut(s)	715, 885
XceI	RCATGY	2 cut(s)	8, 730
XhoI	CTCGAG	1 cut(s)	167
XmnI	GAANNNNTTC	2 cut(s)	135, 372
Zsp2I	ATGCAT	2 cut(s)	6, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.