RchiOBHm_Chr1g0379081

receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001767
Physical Location & Seq
Forward (+)
65249038 .. 65251611
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60243

Sequence Viewer

Length: 1086 bp
ATGAGTCTGGTTGACGAAAGAACCATATTGAGGAGCATCGTAACAAAACAGGATCGTCTGTACCTCCTCAATAAGGTGATAGGCGCTCGTTTAATCTCGTATGAGATAAAGAACTTCTTCGTGCCAAAATCAGACTACACTGAGTTGTCAGAAAAAAAGTCATACTACACTGGAACTATCCGATTTGACAACGAGACACAAAAAGAAGCCTCTTTTTTCAAATTTGCACAGAATGAAGGAGAAATAGCTAAGCATATTTTTAAAGCAGCTTCCAAATTGAATCAAGATGGAATCCTACAGCCCTGGTTTCTCACCAATAACAAATTAGAGAAGACGTGGATTTTATGTTACGAGCGCTTCAACTATCTTCTCAGTGAGCTACCAGATAACGACATTTTTGAGCTGCCTGAAAATTGGCGTCTTTCTGTTAGGAACTCTATGGAGACCATCAAATACATACATGAACGCTATCTTCTTCATCTGGGTTTGAAAAAAAGAAGTAGCTACGCCCTAATTAAAGACAAGAATGGTTTCAAAATCAAAATCCTCTTTGATCGTAATTCGTCGAGTGAGAATTCGGTGTACAACATAAAAAAGGCAAAATTGGATGATTGGAAAGATTATAAGGACGTGCTGGAGTTTCTGTTGAAGTCATTGCCACAAACGGATGACCTAAAGTTGTTTCTAAGTTATTTTGGTCTGGGCCAAAATGGGAAATATAAGGTTTTCGTCGATCGGCTCATCAGACATCCTTTTCTCTTGCGTGCTGAAGAAAAGATGCAGCTTATTACAAATGTACAACATGCAATTATTACCCAAATGATCAGTCAAAATTTTCGGAATGCTGTAAATGGTGAAAAATTCTCCGAGTATGAGAATTGGGATAAGAAACTTGATAATTGGCTGGCAAATATATACTCACGGCAAATAAGAGCTGGAATCAGATATAACGTCCTCAAGGTAACAGGTCTCATCAAGTTTTTAAAAGATATTTATGTCCACCATTGTGGTCAAGTTGAAGAGGTCGATTCTCATGTGCCGCATTCGTTTCCTGGGTTATATGGTCGGCTTTATGAGTCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

361

Amino Acids

42.74

Weight (kDa)

9.21

Isoelectric Point (pI)

26.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AciI CCGC 1 cut(s) 1040
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 4 cut(s) 221, 574, 832, 860
AcuI CTGAAG 1 cut(s) 789
AcyI GRCGYC 1 cut(s) 418
AfaI GTAC 3 cut(s) 62, 584, 798
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 2 cut(s) 30, 73
AgsI TTSAA 7 cut(s) 220, 280, 361, 490, 535, 649, 1019
AjiI CACGTC 2 cut(s) 336, 631
AjnI CCWGG 2 cut(s) 302, 1051
AleI CACNNNNGTG 1 cut(s) 1005
AluBI AGCT 7 cut(s) 248, 269, 379, 403, 504, 784, 935
AluI AGCT 7 cut(s) 248, 269, 379, 403, 504, 784, 935
Alw26I GTCTC 3 cut(s) 188, 437, 974
AlwI GGATC 1 cut(s) 60
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 1 cut(s) 703
ApeKI GCWGC 3 cut(s) 266, 403, 781
ApoI RAATTY 4 cut(s) 221, 574, 832, 860
ArsI GACNNNNNNTTYG 2 cut(s) 811, 843
Asp700I GAANNNNTTC 2 cut(s) 116, 530
AspLEI GCGC 2 cut(s) 86, 357
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 3 cut(s) 88, 304, 866
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 278, 390, 793
BccI CCATC 2 cut(s) 281, 455
BceAI ACGGC 1 cut(s) 938
BciT130I CCWGG 2 cut(s) 304, 1053
BclI TGATCA 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 188, 437, 974
BfmI CTRYAG 1 cut(s) 296
BfoI RGCGCY 2 cut(s) 87, 358
BisI GCNGC 4 cut(s) 267, 404, 782, 1040
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 4 cut(s) 268, 405, 783, 1041
Bme1390I CCNGG 2 cut(s) 304, 1053
BmgBI CACGTC 2 cut(s) 336, 631
BmgT120I GGNCC 1 cut(s) 703
BmrFI CCNGG 2 cut(s) 304, 1053
BmsI GCATC 2 cut(s) 45, 768
BpiI GAAGAC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 656
Bpu1102I GCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 941
BsaHI GRCGYC 1 cut(s) 418
BsaI GGTCTC 2 cut(s) 437, 974
BsaJI CCNNGG 2 cut(s) 302, 1052
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 73
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 653
BseBI CCWGG 2 cut(s) 304, 1053
BseDI CCNNGG 2 cut(s) 302, 1052
BseGI GGATG 3 cut(s) 613, 673, 748
BseLI CCNNNNNNNGG 2 cut(s) 30, 73
BseMI GCAATG 1 cut(s) 653
BseMII CTCAG 2 cut(s) 132, 385
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 2 cut(s) 46, 56
BseXI GCAGC 3 cut(s) 278, 390, 793
Bsh1285I CGRYCG 1 cut(s) 736
BshFI GGCC 1 cut(s) 705
BsiEI CGRYCG 1 cut(s) 736
BslI CCNNNNNNNGG 2 cut(s) 30, 73
BsmAI GTCTC 3 cut(s) 188, 437, 974
BsmI GAATGC 2 cut(s) 847, 1042
BsnI GGCC 1 cut(s) 705
Bso31I GGTCTC 2 cut(s) 437, 974
Bsp1407I TGTACA 2 cut(s) 582, 796
Bsp143I GATC 4 cut(s) 52, 553, 733, 822
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 1 cut(s) 1040
BspANI GGCC 1 cut(s) 705
BspCNI CTCAG 2 cut(s) 133, 384
BspPI GGATC 1 cut(s) 60
BspTNI GGTCTC 2 cut(s) 437, 974
BsrDI GCAATG 1 cut(s) 653
BsrGI TGTACA 2 cut(s) 582, 796
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 302, 1052
BssMI GATC 4 cut(s) 52, 553, 733, 822
BssNI GRCGYC 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 304, 1053
Bst6I CTCTTC 1 cut(s) 1014
BstACI GRCGYC 1 cut(s) 418
BstAUI TGTACA 2 cut(s) 582, 796
BstC8I GCNNGC 2 cut(s) 765, 906
BstDEI CTNAG 4 cut(s) 141, 249, 371, 686
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 3 cut(s) 613, 673, 748
BstH2I RGCGCY 2 cut(s) 87, 358
BstHHI GCGC 2 cut(s) 86, 357
BstKTI GATC 4 cut(s) 55, 556, 736, 825
BstMAI GTCTC 3 cut(s) 188, 437, 974
BstMBI GATC 4 cut(s) 52, 553, 733, 822
BstMCI CGRYCG 1 cut(s) 736
BstNI CCWGG 2 cut(s) 304, 1053
BstNSI RCATGY 1 cut(s) 806
BstSCI CCNGG 2 cut(s) 302, 1051
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 278, 390, 793
BstV2I GAAGAC 1 cut(s) 338
BstXI CCANNNNNNTGG 1 cut(s) 1007
BsuRI GGCC 1 cut(s) 705
BtrI CACGTC 2 cut(s) 336, 631
BtsCI GGATG 3 cut(s) 613, 673, 748
BtsIMutI CAGTG 3 cut(s) 138, 168, 379
Cac8I GCNNGC 2 cut(s) 765, 906
CfoI GCGC 2 cut(s) 86, 357
Cfr13I GGNCC 1 cut(s) 703
CseI GACGC 1 cut(s) 407
Csp6I GTAC 3 cut(s) 61, 583, 797
CviAII CATG 3 cut(s) 461, 803, 1034
CviQI GTAC 3 cut(s) 61, 583, 797
DdeI CTNAG 4 cut(s) 141, 249, 371, 686
DpnI GATC 4 cut(s) 54, 555, 735, 824
DpnII GATC 4 cut(s) 52, 553, 733, 822
DraI TTTAAA 2 cut(s) 262, 984
Eam1104I CTCTTC 1 cut(s) 1014
EarI CTCTTC 1 cut(s) 1014
Eco31I GGTCTC 2 cut(s) 437, 974
Eco47III AGCGCT 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 789
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 574
EcoRII CCWGG 2 cut(s) 302, 1051
FaeI CATG 3 cut(s) 464, 806, 1037
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 3 cut(s) 460, 802, 1033
FbaI TGATCA 1 cut(s) 822
Fnu4HI GCNGC 4 cut(s) 267, 404, 782, 1040
FokI GGATG 3 cut(s) 620, 680, 735
Fsp4HI GCNGC 4 cut(s) 267, 404, 782, 1040
GlaI GCGC 2 cut(s) 85, 356
GluI GCNGC 4 cut(s) 267, 404, 782, 1040
GsuI CTGGAG 1 cut(s) 656
HaeII RGCGCY 2 cut(s) 87, 358
HaeIII GGCC 1 cut(s) 705
HgaI GACGC 1 cut(s) 407
HhaI GCGC 2 cut(s) 86, 357
Hin1I GRCGYC 1 cut(s) 418
Hin1II CATG 3 cut(s) 464, 806, 1037
Hin6I GCGC 2 cut(s) 84, 355
HinP1I GCGC 2 cut(s) 84, 355
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 6 cut(s) 4, 280, 291, 939, 1028, 1076
HphI GGTGA 3 cut(s) 88, 304, 866
Hpy166II GTNNAC 3 cut(s) 13, 583, 1000
Hpy188I TCNGA 7 cut(s) 133, 151, 182, 746, 840, 868, 944
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 3 cut(s) 13, 583, 1000
Hpy99I CGWCG 2 cut(s) 568, 734
HpyAV CCTTC 1 cut(s) 230
HpyCH4IV ACGT 3 cut(s) 335, 630, 951
HpyCH4V TGCA 3 cut(s) 227, 781, 806
HpyF3I CTNAG 4 cut(s) 141, 249, 371, 686
HpySE526I ACGT 3 cut(s) 335, 630, 951
Hsp92I GRCGYC 1 cut(s) 418
Hsp92II CATG 3 cut(s) 464, 806, 1037
HspAI GCGC 2 cut(s) 84, 355
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 4 cut(s) 52, 553, 733, 822
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 3 cut(s) 278, 390, 793
LweI GCATC 2 cut(s) 45, 768
MaeII ACGT 3 cut(s) 335, 630, 951
MaeIII GTNAC 3 cut(s) 40, 347, 961
MalI GATC 4 cut(s) 54, 555, 735, 824
MboI GATC 4 cut(s) 52, 553, 733, 822
MboII GAAGA 7 cut(s) 109, 343, 359, 464, 467, 782, 1031
MlyI GAGTC 2 cut(s) 13, 1085
MnlI CCTC 7 cut(s) 24, 74, 77, 220, 557, 965, 1015
MroXI GAANNNNTTC 2 cut(s) 116, 530
MseI TTAA 4 cut(s) 92, 261, 516, 983
MslI CAYNNNNRTG 1 cut(s) 1005
MspR9I CCNGG 2 cut(s) 304, 1053
Mva1269I GAATGC 2 cut(s) 847, 1042
MvaI CCWGG 2 cut(s) 304, 1053
NdeII GATC 4 cut(s) 52, 553, 733, 822
NlaIII CATG 3 cut(s) 464, 806, 1037
NspI RCATGY 1 cut(s) 806
OliI CACNNNNGTG 1 cut(s) 1005
PctI GAATGC 2 cut(s) 847, 1042
PdmI GAANNNNTTC 2 cut(s) 116, 530
PfeI GAWTC 4 cut(s) 280, 291, 939, 1028
PkrI GCNGC 4 cut(s) 268, 405, 783, 1041
Ple19I CGATCG 1 cut(s) 736
PleI GAGTC 2 cut(s) 12, 1084
PpsI GAGTC 2 cut(s) 12, 1084
PsiI TTATAA 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 302, 1051
PspGI CCWGG 2 cut(s) 302, 1051
PspPI GGNCC 1 cut(s) 703
PvuI CGATCG 1 cut(s) 736
RsaI GTAC 3 cut(s) 62, 584, 798
RsaNI GTAC 3 cut(s) 61, 583, 797
RseI CAYNNNNRTG 1 cut(s) 1005
SaqAI TTAA 4 cut(s) 92, 261, 516, 983
SatI GCNGC 4 cut(s) 267, 404, 782, 1040
Sau3AI GATC 4 cut(s) 52, 553, 733, 822
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 2 cut(s) 13, 1085
ScrFI CCNGG 2 cut(s) 304, 1053
SfaNI GCATC 2 cut(s) 45, 768
SfcI CTRYAG 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 1005
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
SsiI CCGC 1 cut(s) 1040
StyD4I CCNGG 2 cut(s) 302, 1051
TaiI ACGT 3 cut(s) 338, 633, 954
TaqI TCGA 3 cut(s) 566, 732, 1026
TatI WGTACW 2 cut(s) 582, 796
TauI GCSGC 1 cut(s) 1042
TfiI GAWTC 4 cut(s) 280, 291, 939, 1028
Tru1I TTAA 4 cut(s) 92, 261, 516, 983
Tru9I TTAA 4 cut(s) 92, 261, 516, 983
TscAI CASTG 3 cut(s) 145, 175, 379
TseI GCWGC 3 cut(s) 266, 403, 781
TspDTI ATGAA 3 cut(s) 249, 467, 477
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 3 cut(s) 145, 175, 379
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 4 cut(s) 221, 574, 832, 860
XceI RCATGY 1 cut(s) 806
XmnI GAANNNNTTC 2 cut(s) 116, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.