Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Reverse (-)

5776625 .. 5778223

Gene Structure 1599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026770

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAATGTAGACATCATGCAATACGAGTTTTCATTCACAAGACATGATGACCCGTATTTTTCTGGAAAAATCAAATTCTCTTATGATGAAGAAAGAGAGGCGAGGTTTTTCTTGGTTAAAGACGAGGAGATAGCTAGGAAGATATGGAAGGAAAGCTCAAACTTAAGGCATAACGCAATTTTAAAGCTTTGGTTTGTCAGCTATTGCGACAAGTTCGAAGGTTGGATTTTGGGCTACGAAAAATTCGACTATCTTCTAGATGATTGGCTCAAGTTACAGCACATCGAAACAAAGATTAGAGATAATGATTTGCTAAATGCCGAGTTTAGCCCTTCCATTAGCACACTTATAGAAGGAATCAATTACCTCAACAAGCGTAATCTTTTTCACGGGGGTTTGGACCAAAGCTGCAACTTCGTTGTTATAGATAAGGAGGTAAAAATGATCAATATTGGCAAGCATAGCACTCATATGGCCGAGATGGATCCAAAGCAAGCAGCACAATTCATACAACTAACTCAACTGAGGGTGACGGATATAATGGGAATTAAATCTTTGCTAAACCACATTTTGAATACTACGCCGGACGCTTGGATTGAACGAGACAGTTTTCTTGCTTTCTTCAATTTAGCTCGAACATTAAGCTACGAGAAGTTCATCTTAATGGTTCTTGGACATCCATTTTTGAAGACTAGTGATGTAGCAAGAGTCAAGACATCTTTCGACATTTTGTACGTCAGAGATTGCGAGGGGAAAAAACGCCGTTTTTATCAAGCTTTGAGTGGTCCAAAATTTGGCAGGTATTACCCTTGGAATCAGGTGGCTATGAGCGATCGGTTGAAAGAAGTTTATGATTATTGGGAGTGGTCATCTAACTACCAGGGGCATAGCAGCGTGAGCCTCCTAATTTTCATAAGGAATGTTTATTGGCATCCCAAAACTAGCATGGAGGCATACGATGCTGAGATTAGGACTCTATATTCCGATTTTCTTAATCTTGCTTATGAGGCGGCATGCAGAATATTTGCGGTTGAAGTGACGTCACTTGTAGATTTGGATATAGAGCAGCAGCACGTACAGAATCAAAATGTTGTACCCAGACGTGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGTTGGCGGACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

45.44

Weight (kDa)

8.45

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1043
Acc36I	ACCTGC	1 cut(s)	789
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	3 cut(s)	1010, 1028, 1152
AclWI	GGATC	2 cut(s)	479, 492
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	3 cut(s)	74, 242, 791
AcyI	GRCGYC	1 cut(s)	1040
AfaI	GTAC	3 cut(s)	734, 1077, 1095
AfiI	CCNNNNNNNGG	2 cut(s)	794, 1103
AflII	CTTAAG	1 cut(s)	163
AgsI	TTSAA	6 cut(s)	574, 599, 625, 688, 841, 1034
AhlI	ACTAGT	1 cut(s)	692
AjiI	CACGTC	1 cut(s)	1103
AjnI	CCWGG	1 cut(s)	879
AluBI	AGCT	8 cut(s)	134, 156, 187, 201, 408, 632, 645, 776
AluI	AGCT	8 cut(s)	134, 156, 187, 201, 408, 632, 645, 776
Alw26I	GTCTC	1 cut(s)	597
AlwI	GGATC	2 cut(s)	479, 492
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	5 cut(s)	408, 497, 891, 1066, 1069
ApoI	RAATTY	3 cut(s)	74, 242, 791
AspS9I	GGNCC	2 cut(s)	400, 785
AsuHPI	GGTGA	1 cut(s)	541
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	400, 785
BamHI	GGATCC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	695
BbvI	GCAGC	5 cut(s)	395, 509, 903, 1078, 1081
BccI	CCATC	1 cut(s)	475
BceAI	ACGGC	1 cut(s)	747
BciT130I	CCWGG	1 cut(s)	881
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	597
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	4 cut(s)	135, 257, 693, 942
BfrI	CTTAAG	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	789
BisI	GCNGC	6 cut(s)	409, 498, 892, 1011, 1067, 1070
BlsI	GCNGC	6 cut(s)	410, 499, 893, 1012, 1068, 1071
Bme1390I	CCNGG	1 cut(s)	881
Bme18I	GGWCC	2 cut(s)	400, 785
BmgBI	CACGTC	1 cut(s)	1103
BmgT120I	GGNCC	2 cut(s)	400, 785
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	881
BmsI	GCATC	2 cut(s)	940, 949
BpiI	GAAGAC	1 cut(s)	695
Bpu14I	TTCGAA	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	1075
BsaHI	GRCGYC	1 cut(s)	1040
BsaJI	CCNNGG	2 cut(s)	809, 880
Bsc4I	CCNNNNNNNGG	2 cut(s)	794, 1103
BseBI	CCWGG	1 cut(s)	881
BseDI	CCNNGG	2 cut(s)	809, 880
BseGI	GGATG	2 cut(s)	676, 931
BseLI	CCNNNNNNNGG	2 cut(s)	794, 1103
BseMII	CTCAG	2 cut(s)	515, 954
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	5 cut(s)	395, 509, 903, 1078, 1081
Bsh1285I	CGRYCG	1 cut(s)	835
BshFI	GGCC	1 cut(s)	476
BsiEI	CGRYCG	1 cut(s)	835
BsiSI	CCGG	1 cut(s)	584
BslI	CCNNNNNNNGG	2 cut(s)	794, 1103
BsmAI	GTCTC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	444, 484, 832
BspACI	CCGC	3 cut(s)	1010, 1028, 1152
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	2 cut(s)	516, 955
BspLI	GGNNCC	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	789
BspPI	GGATC	2 cut(s)	479, 492
BspT104I	TTCGAA	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	809, 880
BssMI	GATC	3 cut(s)	444, 484, 832
BssNI	GRCGYC	1 cut(s)	1040
BssT1I	CCWWGG	1 cut(s)	809
Bst2UI	CCWGG	1 cut(s)	881
Bst4CI	ACNGT	1 cut(s)	608
BstACI	GRCGYC	1 cut(s)	1040
BstAFI	CTTAAG	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstBAI	YACGTR	1 cut(s)	1075
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	458, 495, 1015
BstDEI	CTNAG	2 cut(s)	524, 963
BstF5I	GGATG	2 cut(s)	676, 931
BstKTI	GATC	3 cut(s)	447, 487, 835
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	3 cut(s)	444, 484, 832
BstMCI	CGRYCG	1 cut(s)	835
BstMWI	GCNNNNNNNGC	5 cut(s)	462, 897, 959, 1007, 1149
BstNI	CCWGG	1 cut(s)	881
BstNSI	RCATGY	1 cut(s)	1017
BstSCI	CCNGG	1 cut(s)	879
BstV1I	GCAGC	5 cut(s)	395, 509, 903, 1078, 1081
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	476
BtrI	CACGTC	1 cut(s)	1103
BtsCI	GGATG	2 cut(s)	676, 931
BveI	ACCTGC	1 cut(s)	789
Cac8I	GCNNGC	3 cut(s)	458, 495, 1015
Cfr13I	GGNCC	2 cut(s)	400, 785
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	3 cut(s)	733, 1076, 1094
CviAII	CATG	4 cut(s)	16, 44, 946, 1014
CviQI	GTAC	3 cut(s)	733, 1076, 1094
DdeI	CTNAG	2 cut(s)	524, 963
DpnI	GATC	3 cut(s)	446, 486, 834
DpnII	GATC	3 cut(s)	444, 484, 832
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	809
Eco47I	GGWCC	2 cut(s)	400, 785
EcoRII	CCWGG	1 cut(s)	879
EcoT14I	CCWWGG	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	809
FaeI	CATG	4 cut(s)	19, 47, 949, 1017
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FatI	CATG	4 cut(s)	15, 43, 945, 1013
FauNDI	CATATG	1 cut(s)	471
FbaI	TGATCA	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	6 cut(s)	409, 498, 892, 1011, 1067, 1070
FokI	GGATG	2 cut(s)	663, 918
Fsp4HI	GCNGC	6 cut(s)	409, 498, 892, 1011, 1067, 1070
FspBI	CTAG	4 cut(s)	135, 257, 693, 942
GluI	GCNGC	6 cut(s)	409, 498, 892, 1011, 1067, 1070
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	1 cut(s)	584
HgaI	GACGC	1 cut(s)	596
Hin1I	GRCGYC	1 cut(s)	1040
Hin1II	CATG	4 cut(s)	19, 47, 949, 1017
HindIII	AAGCTT	2 cut(s)	185, 774
HinfI	GANTC	5 cut(s)	357, 708, 814, 973, 1081
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	740, 985
Hpy188III	TCNNGA	3 cut(s)	63, 257, 712
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	142, 212, 342, 347
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	4 cut(s)	735, 1040, 1074, 1102
HpyCH4V	TGCA	3 cut(s)	19, 411, 1017
HpyF10VI	GCNNNNNNNGC	5 cut(s)	462, 897, 959, 1007, 1149
HpyF3I	CTNAG	2 cut(s)	524, 963
HpySE526I	ACGT	4 cut(s)	735, 1040, 1074, 1102
Hsp92I	GRCGYC	1 cut(s)	1040
Hsp92II	CATG	4 cut(s)	19, 47, 949, 1017
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	3 cut(s)	444, 484, 832
LpnPI	CCDG	7 cut(s)	48, 597, 784, 803, 866, 893, 1111
Lsp1109I	GCAGC	5 cut(s)	395, 509, 903, 1078, 1081
LweI	GCATC	2 cut(s)	940, 949
MaeI	CTAG	4 cut(s)	135, 257, 693, 942
MaeII	ACGT	4 cut(s)	735, 1040, 1074, 1102
MaeIII	GTNAC	4 cut(s)	273, 529, 1036, 1041
MalI	GATC	3 cut(s)	446, 486, 834
MboI	GATC	3 cut(s)	444, 484, 832
MboII	GAAGA	5 cut(s)	101, 151, 245, 613, 700
MflI	RGATCY	1 cut(s)	484
MluCI	AATT	9 cut(s)	74, 177, 242, 361, 503, 546, 625, 791, 906
MlyI	GAGTC	2 cut(s)	717, 967
MmeI	TCCRAC	1 cut(s)	203
MseI	TTAA	7 cut(s)	117, 164, 182, 549, 641, 662, 993
MslI	CAYNNNNRTG	2 cut(s)	470, 662
MspCI	CTTAAG	1 cut(s)	163
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	881
MvaI	CCWGG	1 cut(s)	881
MwoI	GCNNNNNNNGC	5 cut(s)	462, 897, 959, 1007, 1149
NdeI	CATATG	1 cut(s)	471
NdeII	GATC	3 cut(s)	444, 484, 832
NlaIII	CATG	4 cut(s)	19, 47, 949, 1017
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	2 cut(s)	346, 502
NmuCI	GTSAC	3 cut(s)	529, 1036, 1041
NspI	RCATGY	1 cut(s)	1017
NspV	TTCGAA	1 cut(s)	216
PaeI	GCATGC	1 cut(s)	1017
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	3 cut(s)	357, 814, 1081
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	6 cut(s)	410, 499, 893, 1012, 1068, 1071
Ple19I	CGATCG	1 cut(s)	835
PleI	GAGTC	2 cut(s)	716, 967
PpsI	GAGTC	2 cut(s)	716, 967
Ppu21I	YACGTR	1 cut(s)	1075
Psp6I	CCWGG	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	879
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	2 cut(s)	400, 785
PsuI	RGATCY	1 cut(s)	484
PvuI	CGATCG	1 cut(s)	835
RsaI	GTAC	3 cut(s)	734, 1077, 1095
RsaNI	GTAC	3 cut(s)	733, 1076, 1094
RseI	CAYNNNNRTG	2 cut(s)	470, 662
SaqAI	TTAA	7 cut(s)	117, 164, 182, 549, 641, 662, 993
SatI	GCNGC	6 cut(s)	409, 498, 892, 1011, 1067, 1070
Sau3AI	GATC	3 cut(s)	444, 484, 832
Sau96I	GGNCC	2 cut(s)	400, 785
SchI	GAGTC	2 cut(s)	717, 967
ScrFI	CCNGG	1 cut(s)	881
SfaNI	GCATC	2 cut(s)	940, 949
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	2 cut(s)	400, 785
SmiMI	CAYNNNNRTG	2 cut(s)	470, 662
SmlI	CTYRAG	2 cut(s)	163, 269
SmoI	CTYRAG	2 cut(s)	163, 269
SpeI	ACTAGT	1 cut(s)	692
SphI	GCATGC	1 cut(s)	1017
Sse9I	AATT	9 cut(s)	74, 177, 242, 361, 503, 546, 625, 791, 906
SsiI	CCGC	3 cut(s)	1010, 1028, 1152
SspI	AATATT	2 cut(s)	451, 1023
SspMI	CTAG	4 cut(s)	135, 257, 693, 942
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	4 cut(s)	738, 1043, 1077, 1105
TaqI	TCGA	5 cut(s)	216, 246, 285, 634, 723
TasI	AATT	9 cut(s)	74, 177, 242, 361, 503, 546, 625, 791, 906
TauI	GCSGC	1 cut(s)	1013
TfiI	GAWTC	3 cut(s)	357, 814, 1081
Tru1I	TTAA	7 cut(s)	117, 164, 182, 549, 641, 662, 993
Tru9I	TTAA	7 cut(s)	117, 164, 182, 549, 641, 662, 993
TseFI	GTSAC	3 cut(s)	529, 1036, 1041
TseI	GCWGC	5 cut(s)	408, 497, 891, 1066, 1069
Tsp45I	GTSAC	3 cut(s)	529, 1036, 1041
TspDTI	ATGAA	6 cut(s)	17, 21, 102, 496, 646, 901
TspGWI	ACGGA	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	794
Vha464I	CTTAAG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	400, 785
XapI	RAATTY	3 cut(s)	74, 242, 791
XbaI	TCTAGA	1 cut(s)	256
XceI	RCATGY	1 cut(s)	1017
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	4 cut(s)	135, 257, 693, 942
ZraI	GACGTC	1 cut(s)	1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.