Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

33219306 .. 33228737

Gene Structure 9432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG311800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGTACCGGCTTCATTACATCAGTGGGAGCCCTTATTACAATGGCACAATTATTTTTCAGAACAGTGACACAAAAGAGGTGTCTTTTATTCCCTTTGATAAAGGAGAAGGCAAGAAAGTTCGTGATATATACACTTATAACACAAATATCTGTGATGAAAGGGTTCTTAGGCCCTGGTATGTTTCGTATTGTGAAGATATTTGCAAGCACATTATTTGCTATGACCGATTCCACTACTCTTTAAGATATTGGCTGCCAAGGTGGAACAAATTCAATAGTGTTAAAGATGCATATGGTTTGCCTCACTCAGTAATTAAGACACAAATTAGAGTTGAAGCCACTGTGGACAAGATAAAAGACCAGGTTACCCGGATGAACCAAATGATGATCAGGGATCACTTCTCCAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

16.65

Weight (kDa)

8.83

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AclWI	GGATC	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	277, 338
AjnI	CCWGG	2 cut(s)	176, 363
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	272
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	2 cut(s)	165, 272
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	243
BciT130I	CCWGG	2 cut(s)	178, 365
BclI	TGATCA	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	373
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	3 cut(s)	178, 365, 373
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	3 cut(s)	178, 365, 373
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	176, 260
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	178, 365
BseDI	CCNNGG	2 cut(s)	176, 260
BseGI	GGATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	408
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	10, 373
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	390, 397
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	408
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	2 cut(s)	176, 260
BssMI	GATC	2 cut(s)	390, 397
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	178, 365
Bst4CI	ACNGT	2 cut(s)	68, 346
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	170, 310
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	393, 400
BstMBI	GATC	2 cut(s)	390, 397
BstNI	CCWGG	2 cut(s)	178, 365
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	176, 363, 371
BstV1I	GCAGC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	31, 73, 342
Cac8I	GCNNGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	174
CsiI	ACCWGGT	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	7
CviJI	RGCY	5 cut(s)	13, 33, 175, 256, 341
CviKI_1	RGCY	5 cut(s)	13, 33, 175, 256, 341
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	170, 310
DpnI	GATC	2 cut(s)	392, 399
DpnII	GATC	2 cut(s)	390, 397
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	176, 363
EcoT14I	CCWWGG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	260
FaiI	YATR	8 cut(s)	131, 133, 141, 183, 225, 295, 297, 415
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	2 cut(s)	10, 373
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	2 cut(s)	10, 373
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	68, 346
HpyCH4V	TGCA	2 cut(s)	207, 293
HpyF3I	CTNAG	2 cut(s)	170, 310
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	390, 397
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	7 cut(s)	23, 163, 190, 350, 377, 379, 386
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	1 cut(s)	280
MabI	ACCWGGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	68, 367
MalI	GATC	2 cut(s)	392, 399
MboI	GATC	2 cut(s)	390, 397
MboII	GAAGA	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	4 cut(s)	51, 272, 315, 327
MnlI	CCTC	2 cut(s)	73, 315
Mph1103I	ATGCAT	1 cut(s)	295
MroXI	GAANNNNTTC	2 cut(s)	165, 272
MseI	TTAA	3 cut(s)	245, 285, 318
MspI	CCGG	2 cut(s)	10, 373
MspR9I	CCNGG	3 cut(s)	178, 365, 373
MvaI	CCWGG	2 cut(s)	178, 365
NciI	CCSGG	1 cut(s)	373
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	2 cut(s)	390, 397
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	68
NsiI	ATGCAT	1 cut(s)	295
PdmI	GAANNNNTTC	2 cut(s)	165, 272
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	176, 363
PspEI	GGTNACC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	176, 363
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	174
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	3 cut(s)	245, 285, 318
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	2 cut(s)	390, 397
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	3 cut(s)	178, 365, 373
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	3 cut(s)	84, 266, 369
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	4 cut(s)	51, 272, 315, 327
StyD4I	CCNGG	3 cut(s)	176, 363, 371
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	68, 346
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	4 cut(s)	51, 272, 315, 327
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	3 cut(s)	245, 285, 318
Tru9I	TTAA	3 cut(s)	245, 285, 318
TscAI	CASTG	3 cut(s)	31, 73, 349
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	5, 174, 392
TspRI	CASTG	3 cut(s)	31, 73, 349
XapI	RAATTY	1 cut(s)	272
XmnI	GAANNNNTTC	2 cut(s)	165, 272
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.