Rmu_sc0000556.1_g000042

Protein SGT1 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000556.1
Physical Location & Seq
Reverse (-)
205992 .. 209364
3373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000556.1_g000042.1.cds

Sequence Viewer

Length: 1701 bp
atgagtctggttgacgaaagaaccatattgaggagcatcgtaacaaaacaggatggtctgttccgccgcaataaggtgattggcgctcgtttaatctcgtatgagataaagaacttcttcgtgccagaatcatactacactggaactatccgatttgacaacgagacacaaaaagaagcctgttttttcaaatttgcacagaatgaaggagaagtagctaagcatatttttaaagcagcttccaaattgaatcaagatggaatcctacagccctggtttctcaccaataacaaattagagaagacgtggattttatgttacgagcacttcaactctcttctcagtgagctaccagataacaaaatttttgagctgcctgaaaattggcgtctctctgttaggaactctatgaagaccatcaagtacatacatgaacgctatcttcttcatctgggtttaaaaaaaagaagtagctacgccctaattaatgacaagaagaatggtttcaaaatcaaaatcctctttgatcgtaattcatcgactgagaattcggtgtacgacataaaaaaggcaaagttggatgattggaaagattataaggacgtgctggagtttctgttgaagtcattgccacaaacggatgacctaaagttgtttctaaattattttggtctggaccaaaaagggaaatatgatgtattcgttgatcgactcattgcacatccttttctcttgtgtgctgaagaaaacatgaattttattgcaaacgtacagcatgccattattacccaaaggatcagttttttaagtggtgaaaaattcaaagagtatgagaattgggatgagaaacttgatgattggctgaaaggtatatactcacagcaaatagtagatggattcagttataacgtcatgagtgtaacaggtctcatttggtttttgagagatgtttatgtccacaattgtgataaatttgaagagattgattgtcacttgatgcaatcgtttcctgggaagttcctctggaatgaatttgagatgtgcacaaggccagaggttatccctgcaaatgcagagttaagtgtcagcattgatgttcctggagaagagacatatcattttcagcctcgcctgtttggaaaggtattgcatctatttgtggtgctgaggaatcttcttaatttgttaagatatcatgtatatctagagaattctttggagtaccctttccaatttgatgttttgtctaccaaagttgacattcgcctggccaaagctgaacctatacattcaagagatgtccagttcagcaaggataaccctgttccactaaaggttaatgccccagttattggcgtccaaaggccatcttacccatcctccaaaccaaaatgggtagattgggacaagcttgaagcccaagaaaaagatgagaagcttgatggtgatgcagctttgaacaaatttttccaagacatattcaaggatgctgatgaggacacaagaagggccatgagaaaatcttttgtggagttgaacggaacggtgctttcgacaatctggaaaaaagtgggcaccaagaaggtcgaggaaagtgctcctgatggtatggagatgaggaaatgggagtaccaagagctcaagttggacagtgcttgtaacctatttggagtgcctttcgttttggtggacgctgtttag

Protein Analysis

566

Amino Acids

66.35

Weight (kDa)

6.24

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 597, 906
AccB1I GGYRCC 1 cut(s) 1574
AccB7I CCANNNNNTGG 1 cut(s) 1352
AccI GTMKAC 1 cut(s) 1247
AciI CCGC 2 cut(s) 64, 67
AclWI GGATC 1 cut(s) 803
AcoI YGGCCR 1 cut(s) 1269
AcsI RAATTY 9 cut(s) 191, 363, 547, 754, 818, 971, 1031, 1210, 1463
AcuI CTGAAG 1 cut(s) 762
AcyI GRCGYC 2 cut(s) 388, 1356
AfaI GTAC 5 cut(s) 425, 557, 771, 1223, 1631
AfiI CCNNNNNNNGG 3 cut(s) 30, 73, 1352
AjiI CACGTC 2 cut(s) 306, 604
AjnI CCWGG 4 cut(s) 272, 1009, 1099, 1266
AleI CACNNNNGTG 1 cut(s) 963
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
Alw21I GWGCWC 4 cut(s) 327, 1046, 1600, 1641
Alw26I GTCTC 4 cut(s) 158, 395, 932, 1103
Alw44I GTGCAC 1 cut(s) 1042
AlwI GGATC 1 cut(s) 803
AoxI GGCC 4 cut(s) 1049, 1269, 1364, 1509
ApaLI GTGCAC 1 cut(s) 1042
ApeKI GCWGC 3 cut(s) 236, 373, 1451
ApoI RAATTY 9 cut(s) 191, 363, 547, 754, 818, 971, 1031, 1210, 1463
ArsI GACNNNNNNTTYG 2 cut(s) 532, 564
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 2 cut(s) 116, 503
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 676, 1509
AsuHPI GGTGA 4 cut(s) 88, 274, 824, 1457
AvaII GGWCC 1 cut(s) 676
BaeGI GKGCMC 2 cut(s) 1046, 1577
BalI TGGCCA 1 cut(s) 1271
BanI GGYRCC 1 cut(s) 1574
BanII GRGCYC 1 cut(s) 1641
BbsI GAAGAC 2 cut(s) 308, 419
Bbv12I GWGCWC 4 cut(s) 327, 1046, 1600, 1641
BbvCI CCTCAGC 1 cut(s) 1166
BbvI GCAGC 3 cut(s) 248, 360, 1463
BccI CCATC 8 cut(s) 47, 251, 425, 887, 1375, 1384, 1436, 1598
BcgI CGANNNNNNTGC 2 cut(s) 1577, 1611
BciT130I CCWGG 4 cut(s) 274, 1011, 1101, 1268
BcoDI GTCTC 4 cut(s) 158, 395, 932, 1103
BfaI CTAG 1 cut(s) 1205
BfmI CTRYAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 4 cut(s) 67, 237, 374, 1452
BlpI GCTNAGC 1 cut(s) 219
BlsI GCNGC 4 cut(s) 68, 238, 375, 1453
Bme1390I CCNGG 4 cut(s) 274, 1011, 1101, 1268
Bme18I GGWCC 1 cut(s) 676
BmgBI CACGTC 2 cut(s) 306, 604
BmgT120I GGNCC 2 cut(s) 676, 1509
BmiI GGNNCC 1 cut(s) 1576
BmrFI CCNGG 4 cut(s) 274, 1011, 1101, 1268
BmrI ACTGGG 1 cut(s) 1340
BmsI GCATC 5 cut(s) 45, 987, 1159, 1438, 1477
BmuI ACTGGG 1 cut(s) 1340
BpiI GAAGAC 2 cut(s) 308, 419
BpmI CTGGAG 2 cut(s) 629, 1122
Bpu10I CCTNAGC 1 cut(s) 1166
Bpu1102I GCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 1625
BsaHI GRCGYC 2 cut(s) 388, 1356
BsaI GGTCTC 1 cut(s) 932
BsaJI CCNNGG 2 cut(s) 272, 1010
BsaXI ACNNNNNCTCC 4 cut(s) 602, 632, 1364, 1394
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 73, 1352
Bse1I ACTGG 3 cut(s) 145, 1303, 1346
Bse3DI GCAATG 2 cut(s) 626, 714
BseBI CCWGG 4 cut(s) 274, 1011, 1101, 1268
BseDI CCNNGG 2 cut(s) 272, 1010
BseGI GGATG 7 cut(s) 58, 586, 646, 721, 847, 1376, 1492
BseLI CCNNNNNNNGG 3 cut(s) 30, 73, 1352
BseMI GCAATG 2 cut(s) 626, 714
BseMII CTCAG 3 cut(s) 355, 534, 1157
BseNI ACTGG 3 cut(s) 145, 1303, 1346
BseRI GAGGAG 1 cut(s) 46
BseSI GKGCMC 2 cut(s) 1046, 1577
BseXI GCAGC 3 cut(s) 248, 360, 1463
BshFI GGCC 4 cut(s) 1051, 1271, 1366, 1511
BshNI GGYRCC 1 cut(s) 1574
BsiHKAI GWGCWC 4 cut(s) 327, 1046, 1600, 1641
BslFI GGGAC 1 cut(s) 1418
BslI CCNNNNNNNGG 3 cut(s) 30, 73, 1352
BsmAI GTCTC 4 cut(s) 158, 395, 932, 1103
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 1418
BsnI GGCC 4 cut(s) 1051, 1271, 1366, 1511
Bso31I GGTCTC 1 cut(s) 932
Bsp1286I GDGCHC 5 cut(s) 327, 1046, 1577, 1600, 1641
Bsp143I GATC 3 cut(s) 526, 706, 795
Bsp1720I GCTNAGC 1 cut(s) 219
BspACI CCGC 2 cut(s) 64, 67
BspANI GGCC 4 cut(s) 1051, 1271, 1366, 1511
BspCNI CTCAG 3 cut(s) 354, 535, 1158
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 1 cut(s) 1576
BspPI GGATC 1 cut(s) 803
BspT107I GGYRCC 1 cut(s) 1574
BspTNI GGTCTC 1 cut(s) 932
BsrDI GCAATG 2 cut(s) 626, 714
BsrI ACTGG 3 cut(s) 145, 1303, 1346
BssECI CCNNGG 2 cut(s) 272, 1010
BssMI GATC 3 cut(s) 526, 706, 795
BssNI GRCGYC 2 cut(s) 388, 1356
Bst2UI CCWGG 4 cut(s) 274, 1011, 1101, 1268
Bst4CI ACNGT 2 cut(s) 1546, 1652
Bst6I CTCTTC 3 cut(s) 342, 972, 1101
BstACI GRCGYC 2 cut(s) 388, 1356
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 4 cut(s) 219, 341, 543, 1166
BstF5I GGATG 7 cut(s) 58, 586, 646, 721, 847, 1376, 1492
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 3 cut(s) 529, 709, 798
BstMAI GTCTC 4 cut(s) 158, 395, 932, 1103
BstMBI GATC 3 cut(s) 526, 706, 795
BstNI CCWGG 4 cut(s) 274, 1011, 1101, 1268
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 4 cut(s) 272, 1009, 1099, 1266
BstSFI CTRYAG 1 cut(s) 266
BstSLI GKGCMC 2 cut(s) 1046, 1577
BstV1I GCAGC 3 cut(s) 248, 360, 1463
BstV2I GAAGAC 2 cut(s) 308, 419
BsuRI GGCC 4 cut(s) 1051, 1271, 1366, 1511
BtrI CACGTC 2 cut(s) 306, 604
BtsCI GGATG 7 cut(s) 58, 586, 646, 721, 847, 1376, 1492
BtsIMutI CAGTG 3 cut(s) 138, 349, 1657
Cac8I GCNNGC 1 cut(s) 777
CciI TCATGA 1 cut(s) 912
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 676, 1509
CseI GACGC 2 cut(s) 377, 1345
Csp6I GTAC 5 cut(s) 424, 556, 770, 1222, 1630
CviAII CATG 6 cut(s) 431, 751, 776, 913, 1196, 1513
CviQI GTAC 5 cut(s) 424, 556, 770, 1222, 1630
DdeI CTNAG 4 cut(s) 219, 341, 543, 1166
DpnI GATC 3 cut(s) 528, 708, 797
DpnII GATC 3 cut(s) 526, 706, 795
DraI TTTAAA 2 cut(s) 232, 459
EaeI YGGCCR 1 cut(s) 1269
Eam1104I CTCTTC 3 cut(s) 342, 972, 1101
EarI CTCTTC 3 cut(s) 342, 972, 1101
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 1639
Eco24I GRGCYC 1 cut(s) 1641
Eco31I GGTCTC 1 cut(s) 932
Eco32I GATATC 1 cut(s) 1193
Eco47I GGWCC 1 cut(s) 676
Eco53kI GAGCTC 1 cut(s) 1639
Eco57I CTGAAG 1 cut(s) 762
EcoICRI GAGCTC 1 cut(s) 1639
EcoRI GAATTC 2 cut(s) 547, 1210
EcoRII CCWGG 4 cut(s) 272, 1009, 1099, 1266
EcoRV GATATC 1 cut(s) 1193
EcoT38I GRGCYC 1 cut(s) 1641
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 6 cut(s) 434, 754, 779, 916, 1199, 1516
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 1354, 1386
FaqI GGGAC 1 cut(s) 1418
FatI CATG 6 cut(s) 430, 750, 775, 912, 1195, 1512
FblI GTMKAC 1 cut(s) 1247
Fnu4HI GCNGC 4 cut(s) 67, 237, 374, 1452
FokI GGATG 7 cut(s) 65, 593, 653, 708, 854, 1363, 1499
FriOI GRGCYC 1 cut(s) 1641
Fsp4HI GCNGC 4 cut(s) 67, 237, 374, 1452
FspBI CTAG 1 cut(s) 1205
GlaI GCGC 1 cut(s) 85
GluI GCNGC 4 cut(s) 67, 237, 374, 1452
GsuI CTGGAG 2 cut(s) 629, 1122
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 4 cut(s) 1051, 1271, 1366, 1511
HgaI GACGC 2 cut(s) 377, 1345
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 2 cut(s) 388, 1356
Hin1II CATG 6 cut(s) 434, 754, 779, 916, 1199, 1516
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HincII GTYRAC 2 cut(s) 13, 1258
HindII GTYRAC 2 cut(s) 13, 1258
HindIII AAGCTT 2 cut(s) 1409, 1436
HinfI GANTC 7 cut(s) 4, 128, 250, 261, 711, 897, 1171
HphI GGTGA 4 cut(s) 88, 274, 824, 1457
Hpy166II GTNNAC 7 cut(s) 13, 556, 958, 1044, 1248, 1258, 1690
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 8 cut(s) 254, 674, 913, 1024, 1205, 1293, 1561, 1601
Hpy8I GTNNAC 7 cut(s) 13, 556, 958, 1044, 1248, 1258, 1690
HpyAV CCTTC 3 cut(s) 200, 1500, 1576
HpyCH4III ACNGT 2 cut(s) 1546, 1652
HpyCH4IV ACGT 4 cut(s) 305, 603, 768, 909
HpyCH4V TGCA 9 cut(s) 197, 719, 764, 1000, 1044, 1067, 1073, 1150, 1451
HpyF3I CTNAG 4 cut(s) 219, 341, 543, 1166
HpySE526I ACGT 4 cut(s) 305, 603, 768, 909
Hsp92I GRCGYC 2 cut(s) 388, 1356
Hsp92II CATG 6 cut(s) 434, 754, 779, 916, 1199, 1516
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 3 cut(s) 526, 706, 795
LmnI GCTCC 2 cut(s) 33, 1603
Lsp1109I GCAGC 3 cut(s) 248, 360, 1463
LweI GCATC 5 cut(s) 45, 987, 1159, 1438, 1477
MaeI CTAG 1 cut(s) 1205
MaeII ACGT 4 cut(s) 305, 603, 768, 909
MaeIII GTNAC 5 cut(s) 40, 317, 919, 989, 1658
MalI GATC 3 cut(s) 528, 708, 797
MboI GATC 3 cut(s) 526, 706, 795
MfeI CAATTG 1 cut(s) 961
MhlI GDGCHC 5 cut(s) 327, 1046, 1577, 1600, 1641
MlsI TGGCCA 1 cut(s) 1271
MluNI TGGCCA 1 cut(s) 1271
MlyI GAGTC 2 cut(s) 13, 705
MmeI TCCRAC 2 cut(s) 558, 1626
Mox20I TGGCCA 1 cut(s) 1271
MroXI GAANNNNTTC 2 cut(s) 116, 503
MscI TGGCCA 1 cut(s) 1271
MseI TTAA 9 cut(s) 92, 231, 458, 486, 806, 1079, 1179, 1187, 1338
MslI CAYNNNNRTG 1 cut(s) 963
Msp20I TGGCCA 1 cut(s) 1271
MspR9I CCNGG 4 cut(s) 274, 1011, 1101, 1268
MunI CAATTG 1 cut(s) 961
MvaI CCWGG 4 cut(s) 274, 1011, 1101, 1268
NdeII GATC 3 cut(s) 526, 706, 795
NlaIII CATG 6 cut(s) 434, 754, 779, 916, 1199, 1516
NlaIV GGNNCC 1 cut(s) 1576
NmuCI GTSAC 1 cut(s) 989
NspI RCATGY 1 cut(s) 779
OliI CACNNNNGTG 1 cut(s) 963
PaeI GCATGC 1 cut(s) 779
PagI TCATGA 1 cut(s) 912
PcsI WCGNNNNNNNCGW 1 cut(s) 1550
PdmI GAANNNNTTC 2 cut(s) 116, 503
PfeI GAWTC 5 cut(s) 128, 250, 261, 897, 1171
PflMI CCANNNNNTGG 1 cut(s) 1352
PfoI TCCNGGA 1 cut(s) 1099
PkrI GCNGC 4 cut(s) 68, 238, 375, 1453
PleI GAGTC 2 cut(s) 12, 705
PpsI GAGTC 2 cut(s) 12, 705
PshBI ATTAAT 1 cut(s) 486
PsiI TTATAA 2 cut(s) 597, 906
Psp124BI GAGCTC 1 cut(s) 1641
Psp6I CCWGG 4 cut(s) 272, 1009, 1099, 1266
PspGI CCWGG 4 cut(s) 272, 1009, 1099, 1266
PspN4I GGNNCC 1 cut(s) 1576
PspPI GGNCC 2 cut(s) 676, 1509
RsaI GTAC 5 cut(s) 425, 557, 771, 1223, 1631
RsaNI GTAC 5 cut(s) 424, 556, 770, 1222, 1630
RseI CAYNNNNRTG 1 cut(s) 963
SacI GAGCTC 1 cut(s) 1641
SaqAI TTAA 9 cut(s) 92, 231, 458, 486, 806, 1079, 1179, 1187, 1338
SatI GCNGC 4 cut(s) 67, 237, 374, 1452
Sau3AI GATC 3 cut(s) 526, 706, 795
Sau96I GGNCC 2 cut(s) 676, 1509
SchI GAGTC 2 cut(s) 13, 705
ScrFI CCNGG 4 cut(s) 274, 1011, 1101, 1268
SduI GDGCHC 5 cut(s) 327, 1046, 1577, 1600, 1641
SfaNI GCATC 5 cut(s) 45, 987, 1159, 1438, 1477
SfcI CTRYAG 1 cut(s) 266
SinI GGWCC 1 cut(s) 676
SmiMI CAYNNNNRTG 1 cut(s) 963
SmlI CTYRAG 1 cut(s) 1640
SmoI CTYRAG 1 cut(s) 1640
SphI GCATGC 1 cut(s) 779
SsiI CCGC 2 cut(s) 64, 67
SspMI CTAG 1 cut(s) 1205
SstI GAGCTC 1 cut(s) 1641
StyD4I CCNGG 4 cut(s) 272, 1009, 1099, 1266
TaaI ACNGT 2 cut(s) 1546, 1652
TaiI ACGT 4 cut(s) 308, 606, 771, 912
TaqI TCGA 4 cut(s) 539, 709, 1553, 1587
TatI WGTACW 1 cut(s) 423
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 5 cut(s) 128, 250, 261, 897, 1171
Tru1I TTAA 9 cut(s) 92, 231, 458, 486, 806, 1079, 1179, 1187, 1338
Tru9I TTAA 9 cut(s) 92, 231, 458, 486, 806, 1079, 1179, 1187, 1338
TscAI CASTG 3 cut(s) 145, 349, 1657
TseFI GTSAC 1 cut(s) 989
TseI GCWGC 3 cut(s) 236, 373, 1451
Tsp45I GTSAC 1 cut(s) 989
TspDTI ATGAA 7 cut(s) 219, 425, 437, 447, 525, 767, 1044
TspGWI ACGGA 2 cut(s) 653, 1554
TspRI CASTG 3 cut(s) 145, 349, 1657
Van91I CCANNNNNTGG 1 cut(s) 1352
VneI GTGCAC 1 cut(s) 1042
VpaK11BI GGWCC 1 cut(s) 676
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 9 cut(s) 191, 363, 547, 754, 818, 971, 1031, 1210, 1463
XbaI TCTAGA 1 cut(s) 1204
XceI RCATGY 1 cut(s) 779
XmiI GTMKAC 1 cut(s) 1247
XmnI GAANNNNTTC 2 cut(s) 116, 503
XspI CTAG 1 cut(s) 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.