Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Reverse (-)

1013714 .. 1019795

Gene Structure 6082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTGATGATAAAAATTATATGCAGCGTCAGAAACAATTCTTAACTGATACCAAACAGAAAATCAAGGCTAGACTCAACAAGAGTAGGCTCATAAGTGCAAATATTATCAGATATGAATTCCTCTGTGATGGACCATCTCAAACCTTGTTTAATGGGAAAATAGTTTTTGAACATGGTGAAGAGAGGGAGGTTCTATTTTTGAAATCAGATGAAGAAGTAGCAAAGAAAATCTTTTCTGCAACTTATGATCTACATAATGAGGCAATATTGAAAGAGGCAAGAAGATTGAACCAGAAGATATGGTACTCCAAGGCTGCACTACCTTCGGGAATTGGTGACTCAATTTCAGAGTACTACCTTGTGAATAATCAAAAGAGAAGACTGTCGCTAATCTGGTGGACTTTGCTTATGATCCTTACAATTATACCTATTTGCGCCAGCTCAACCGACATTGTTGGCTGTGTATCGGTGTCCGTCCGCCACGCCCGTAATGGTGACGGCCTGCGGCCTAGCCAACGCACATTGGGTGAGGCTGGACGGGTAATTTGTTTTGATGCCGTGTTTCGGCTCGAAGAGGAGATTGGGGGAGGTACTTACTTCTCTCTCTCGGTTGAAAGGAGTAGGCGCCTCGTGGCTGCGACTAGGATCACGGTGGGCTTGGGACTCTACCGGGCAGAGCGGTGTTTGGTGGAGGTCGGAGGTCGACGGGCCATGTTTAATGGAATAGATCGGACGTTGTTTGGCTGGTTCACGATGGTGATCGGATTGTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.44

Weight (kDa)

9.49

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	627
AccBSI	CCGCTC	1 cut(s)	682
AccI	GTMKAC	1 cut(s)	706
AciI	CCGC	3 cut(s)	481, 508, 682
AclWI	GGATC	2 cut(s)	409, 656
AcsI	RAATTY	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	628
AfaI	GTAC	3 cut(s)	308, 356, 595
AfiI	CCNNNNNNNGG	1 cut(s)	567
AgsI	TTSAA	5 cut(s)	173, 205, 274, 292, 617
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AleI	CACNNNNGTG	1 cut(s)	758
AluBI	AGCT	1 cut(s)	444
AluI	AGCT	1 cut(s)	444
AlwI	GGATC	2 cut(s)	409, 656
AoxI	GGCC	3 cut(s)	502, 509, 711
ApeKI	GCWGC	3 cut(s)	25, 317, 638
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	440, 630
AspS9I	GGNCC	2 cut(s)	134, 711
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	5 cut(s)	191, 350, 509, 542, 772
AvaII	GGWCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	627
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
BauI	CACGAG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	37, 304, 625
BccI	CCATC	3 cut(s)	125, 145, 751
BceAI	ACGGC	2 cut(s)	517, 545
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BcnI	CCSGG	1 cut(s)	674
BfaI	CTAG	3 cut(s)	72, 513, 645
BfoI	RGCGCY	1 cut(s)	631
BisI	GCNGC	4 cut(s)	26, 318, 509, 639
BlsI	GCNGC	4 cut(s)	27, 319, 510, 640
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	674
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	134, 711
BmiI	GGNNCC	1 cut(s)	629
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	761
BsaHI	GRCGYC	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	761
BseDI	CCNNGG	1 cut(s)	312
BseJI	GATNNNNATC	1 cut(s)	761
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	3 cut(s)	37, 304, 625
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	504, 511, 713
BshNI	GGYRCC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	678
BsnI	GGCC	3 cut(s)	504, 511, 713
Bsp143I	GATC	5 cut(s)	250, 414, 648, 730, 762
BspACI	CCGC	3 cut(s)	481, 508, 682
BspANI	GGCC	3 cut(s)	504, 511, 713
BspLI	GGNNCC	1 cut(s)	629
BspPI	GGATC	2 cut(s)	409, 656
BspT107I	GGYRCC	1 cut(s)	627
BsrBI	CCGCTC	1 cut(s)	682
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	5 cut(s)	250, 414, 648, 730, 762
BssNI	GRCGYC	1 cut(s)	628
BssSI	CACGAG	1 cut(s)	632
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	632
Bst4CI	ACNGT	2 cut(s)	387, 655
Bst6I	CTCTTC	2 cut(s)	177, 570
BstACI	GRCGYC	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	442, 506
BstH2I	RGCGCY	1 cut(s)	631
BstHHI	GCGC	2 cut(s)	440, 630
BstKTI	GATC	5 cut(s)	253, 417, 651, 733, 765
BstMBI	GATC	5 cut(s)	250, 414, 648, 730, 762
BstSCI	CCNGG	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	37, 304, 625
BstV2I	GAAGAC	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	504, 511, 713
Cac8I	GCNNGC	2 cut(s)	442, 506
CfoI	GCGC	2 cut(s)	440, 630
Cfr13I	GGNCC	2 cut(s)	134, 711
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	307, 355, 594
CviAII	CATG	2 cut(s)	176, 715
CviQI	GTAC	3 cut(s)	307, 355, 594
DinI	GGCGCC	1 cut(s)	629
DpnI	GATC	5 cut(s)	252, 416, 650, 732, 764
DpnII	GATC	5 cut(s)	250, 414, 648, 730, 762
Eam1104I	CTCTTC	2 cut(s)	177, 570
EarI	CTCTTC	2 cut(s)	177, 570
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	312
EgeI	GGCGCC	1 cut(s)	629
EheI	GGCGCC	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	179, 718
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	2 cut(s)	175, 714
FblI	GTMKAC	1 cut(s)	706
Fnu4HI	GCNGC	4 cut(s)	26, 318, 509, 639
Fsp4HI	GCNGC	4 cut(s)	26, 318, 509, 639
FspBI	CTAG	3 cut(s)	72, 513, 645
GlaI	GCGC	2 cut(s)	439, 629
GluI	GCNGC	4 cut(s)	26, 318, 509, 639
HaeII	RGCGCY	1 cut(s)	631
HaeIII	GGCC	3 cut(s)	504, 511, 713
HapII	CCGG	1 cut(s)	673
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	2 cut(s)	440, 630
Hin1I	GRCGYC	1 cut(s)	628
Hin1II	CATG	2 cut(s)	179, 718
Hin6I	GCGC	2 cut(s)	438, 628
HinP1I	GCGC	2 cut(s)	438, 628
HincII	GTYRAC	1 cut(s)	707
HindII	GTYRAC	1 cut(s)	707
HinfI	GANTC	3 cut(s)	75, 341, 666
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	5 cut(s)	191, 350, 509, 542, 772
Hpy166II	GTNNAC	3 cut(s)	402, 707, 753
Hpy188I	TCNGA	7 cut(s)	33, 113, 211, 352, 701, 735, 767
Hpy188III	TCNNGA	2 cut(s)	330, 754
Hpy8I	GTNNAC	3 cut(s)	402, 707, 753
Hpy99I	CGWCG	1 cut(s)	711
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	2 cut(s)	387, 655
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	4 cut(s)	25, 101, 242, 320
HpySE526I	ACGT	1 cut(s)	737
Hsp92I	GRCGYC	1 cut(s)	628
Hsp92II	CATG	2 cut(s)	179, 718
HspAI	GCGC	2 cut(s)	438, 628
KasI	GGCGCC	1 cut(s)	627
Kzo9I	GATC	5 cut(s)	250, 414, 648, 730, 762
LpnPI	CCDG	7 cut(s)	308, 382, 454, 518, 522, 686, 733
Lsp1109I	GCAGC	3 cut(s)	37, 304, 625
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	3 cut(s)	72, 513, 645
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	2 cut(s)	338, 497
MalI	GATC	5 cut(s)	252, 416, 650, 732, 764
MbiI	CCGCTC	1 cut(s)	682
MboI	GATC	5 cut(s)	250, 414, 648, 730, 762
MboII	GAAGA	6 cut(s)	194, 227, 297, 310, 393, 587
MluCI	AATT	7 cut(s)	16, 38, 119, 333, 345, 423, 546
Mly113I	GGCGCC	1 cut(s)	628
MlyI	GAGTC	3 cut(s)	69, 335, 660
MmeI	TCCRAC	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	3 cut(s)	44, 153, 720
MslI	CAYNNNNRTG	1 cut(s)	758
MspI	CCGG	1 cut(s)	673
MspR9I	CCNGG	1 cut(s)	674
NarI	GGCGCC	1 cut(s)	628
NciI	CCSGG	1 cut(s)	674
NdeII	GATC	5 cut(s)	250, 414, 648, 730, 762
NlaIII	CATG	2 cut(s)	179, 718
NlaIV	GGNNCC	1 cut(s)	629
NmuCI	GTSAC	2 cut(s)	338, 497
OliI	CACNNNNGTG	1 cut(s)	758
PdmI	GAANNNNTTC	1 cut(s)	38
PkrI	GCNGC	4 cut(s)	27, 319, 510, 640
PleI	GAGTC	3 cut(s)	69, 335, 660
PluTI	GGCGCC	1 cut(s)	631
PpsI	GAGTC	3 cut(s)	69, 335, 660
PspN4I	GGNNCC	1 cut(s)	629
PspPI	GGNCC	2 cut(s)	134, 711
RsaI	GTAC	3 cut(s)	308, 356, 595
RsaNI	GTAC	3 cut(s)	307, 355, 594
RseI	CAYNNNNRTG	1 cut(s)	758
SalI	GTCGAC	1 cut(s)	705
SaqAI	TTAA	3 cut(s)	44, 153, 720
SatI	GCNGC	4 cut(s)	26, 318, 509, 639
Sau3AI	GATC	5 cut(s)	250, 414, 648, 730, 762
Sau96I	GGNCC	2 cut(s)	134, 711
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	3 cut(s)	69, 335, 660
ScrFI	CCNGG	1 cut(s)	674
SfaNI	GCATC	1 cut(s)	547
SfoI	GGCGCC	1 cut(s)	629
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	758
Sse9I	AATT	7 cut(s)	16, 38, 119, 333, 345, 423, 546
SsiI	CCGC	3 cut(s)	481, 508, 682
SspDI	GGCGCC	1 cut(s)	627
SspI	AATATT	2 cut(s)	106, 270
SspMI	CTAG	3 cut(s)	72, 513, 645
StyD4I	CCNGG	1 cut(s)	672
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	387, 655
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	2 cut(s)	573, 706
TasI	AATT	7 cut(s)	16, 38, 119, 333, 345, 423, 546
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	511
Tru1I	TTAA	3 cut(s)	44, 153, 720
Tru9I	TTAA	3 cut(s)	44, 153, 720
TseFI	GTSAC	2 cut(s)	338, 497
TseI	GCWGC	3 cut(s)	25, 317, 638
Tsp45I	GTSAC	2 cut(s)	338, 497
TspDTI	ATGAA	2 cut(s)	132, 228
TspGWI	ACGGA	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	3 cut(s)	72, 513, 645
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.