Rorug07G0155600

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000150
Physical Location & Seq
Forward (+)
12340284 .. 12341642
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0155600.1

Sequence Viewer

Length: 789 bp
ATGTATATATACGATACGCAGACGTATATACTGTACACATACAAATACCATTTTTCTTTCTATCCACACAAGCACGTACAGCTACAGAGAGAGAGGATGAAGATTGTTCCTTTCTTCAAATCTTTGTCAAGGTCGGTTCATGAAGAACAAAATGATCATGATGACCAGGAATCAAAAGCAGGTATCGATAGCAGTGGCCCTAGTGGGGCTTGCACATCGATATCATTAACAGTATGGAGAAAATCTCTTGTAATTAGCTGTAAAGGGTTCACAGTGATCGATTCCAATGGAGATCTGGTTTATCGGGTCGACAATTATGTCGGTCATCCTCAAGAAGTCACTCTCATGGATGGCTCTGGGAAATCGGTCCTCACAATGCGTCGTAACAAGAAGTTTAGTCTGGTAGAGAGCTGGTTCGTGTACGAAGGAGACGTGGGAGACTTTTTCACAGCAAGAACAACTAGAGCAGCACCAAAGTGTTGGCCAGTTTTTTGCGTGAGGAAGAACAAGAACATGTTAAATGCCAATCCCAGTACACTTGCCCATGTATATCGTGAAGCATCGGGTAGTCATAAAAGATGTGCTTATGTGATTGAAGGGTCTTACACGCATCGATCATGCAAGGTATTGGAGGAGTTCTCGAGGAATGTGGTGGCTGAGATTAAGAGGAAGGAAGCAAATGTTGGAGGAGTTTCTTATGGGCTGGAGGTTTTCCATTTGGTTGTGCATCCTGGATTTGATCCTGGATTTGCAATGGCGCTTGTGCTATTATTAGATCAAATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

262

Amino Acids

29.88

Weight (kDa)

8.78

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 75 - 259 2.3e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 309
AclWI GGATC 1 cut(s) 734
AcoI YGGCCR 1 cut(s) 482
AfaI GTAC 4 cut(s) 35, 78, 422, 535
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 2 cut(s) 118, 596
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 3 cut(s) 165, 730, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AleI CACNNNNGTG 1 cut(s) 475
AluBI AGCT 3 cut(s) 82, 258, 411
AluI AGCT 3 cut(s) 82, 258, 411
Alw26I GTCTC 2 cut(s) 423, 432
AlwI GGATC 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 640
AoxI GGCC 2 cut(s) 196, 482
ApeKI GCWGC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 760
AspS9I GGNCC 2 cut(s) 197, 367
AvaI CYCGRG 1 cut(s) 640
AvaII GGWCC 1 cut(s) 367
BalI TGGCCA 1 cut(s) 484
BbvI GCAGC 1 cut(s) 479
BccI CCATC 1 cut(s) 344
BciT130I CCWGG 3 cut(s) 167, 732, 744
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 423, 432
BfaI CTAG 2 cut(s) 201, 462
BfmI CTRYAG 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 761
BfuAI ACCTGC 1 cut(s) 170
BglII AGATCT 1 cut(s) 292
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 3 cut(s) 167, 732, 744
Bme18I GGWCC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 640
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 2 cut(s) 197, 367
BmrFI CCNGG 3 cut(s) 167, 732, 744
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 3 cut(s) 569, 619, 736
BmuI ACTGGG 1 cut(s) 525
BplI GAGNNNNNCTC 4 cut(s) 229, 261, 623, 655
BpmI CTGGAG 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 315
Bsa29I ATCGAT 4 cut(s) 186, 218, 279, 613
BsaAI YACGTR 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 485, 531
Bse3DI GCAATG 1 cut(s) 759
BseBI CCWGG 3 cut(s) 167, 732, 744
BseCI ATCGAT 4 cut(s) 186, 218, 279, 613
BseGI GGATG 4 cut(s) 102, 325, 355, 727
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 2 cut(s) 485, 531
BseRI GAGGAG 2 cut(s) 647, 702
BseXI GCAGC 1 cut(s) 479
BshFI GGCC 2 cut(s) 198, 484
BshVI ATCGAT 4 cut(s) 186, 218, 279, 613
BsiHKCI CYCGRG 1 cut(s) 640
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 423, 432
BsmBI CGTCTC 1 cut(s) 423
BsnI GGCC 2 cut(s) 198, 484
BsoBI CYCGRG 1 cut(s) 640
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 6 cut(s) 154, 276, 292, 614, 739, 775
BspANI GGCC 2 cut(s) 198, 484
BspCNI CTCAG 1 cut(s) 649
BspDI ATCGAT 4 cut(s) 186, 218, 279, 613
BspHI TCATGA 2 cut(s) 139, 157
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 759
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 2 cut(s) 485, 531
BssMI GATC 6 cut(s) 154, 276, 292, 614, 739, 775
Bst2UI CCWGG 3 cut(s) 167, 732, 744
Bst4CI ACNGT 3 cut(s) 33, 232, 274
BstAUI TGTACA 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 657
BstF5I GGATG 4 cut(s) 102, 325, 355, 727
BstH2I RGCGCY 1 cut(s) 761
BstHHI GCGC 1 cut(s) 760
BstKTI GATC 6 cut(s) 157, 279, 295, 617, 742, 778
BstMAI GTCTC 2 cut(s) 423, 432
BstMBI GATC 6 cut(s) 154, 276, 292, 614, 739, 775
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 3 cut(s) 167, 732, 744
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 3 cut(s) 165, 730, 742
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 480
BstYI RGATCY 1 cut(s) 292
Bsu15I ATCGAT 4 cut(s) 186, 218, 279, 613
BsuRI GGCC 2 cut(s) 198, 484
BsuTUI ATCGAT 4 cut(s) 186, 218, 279, 613
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 4 cut(s) 102, 325, 355, 727
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 199, 279
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 211
CciI TCATGA 2 cut(s) 139, 157
CfoI GCGC 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 197, 367
ClaI ATCGAT 4 cut(s) 186, 218, 279, 613
CseI GACGC 1 cut(s) 368
Csp6I GTAC 4 cut(s) 34, 77, 421, 534
CviAII CATG 6 cut(s) 140, 158, 346, 514, 545, 618
CviJI RGCY 9 cut(s) 82, 198, 209, 258, 354, 411, 484, 656, 703
CviKI_1 RGCY 9 cut(s) 82, 198, 209, 258, 354, 411, 484, 656, 703
CviQI GTAC 4 cut(s) 34, 77, 421, 534
DdeI CTNAG 1 cut(s) 657
DpnI GATC 6 cut(s) 156, 278, 294, 616, 741, 777
DpnII GATC 6 cut(s) 154, 276, 292, 614, 739, 775
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 482
Eco32I GATATC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 367
Eco88I CYCGRG 1 cut(s) 640
EcoRII CCWGG 3 cut(s) 165, 730, 742
EcoRV GATATC 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 6 cut(s) 143, 161, 349, 517, 548, 621
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FatI CATG 6 cut(s) 139, 157, 345, 513, 544, 617
FbaI TGATCA 1 cut(s) 154
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 4 cut(s) 109, 312, 362, 714
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 2 cut(s) 201, 462
GlaI GCGC 1 cut(s) 759
GluI GCNGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 725
HaeII RGCGCY 1 cut(s) 761
HaeIII GGCC 2 cut(s) 198, 484
HgaI GACGC 1 cut(s) 368
HhaI GCGC 1 cut(s) 760
Hin1II CATG 6 cut(s) 143, 161, 349, 517, 548, 621
Hin6I GCGC 1 cut(s) 758
HinP1I GCGC 1 cut(s) 758
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 2 cut(s) 170, 281
Hpy166II GTNNAC 5 cut(s) 36, 270, 310, 421, 536
Hpy188III TCNNGA 5 cut(s) 140, 158, 332, 554, 640
Hpy8I GTNNAC 5 cut(s) 36, 270, 310, 421, 536
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 3 cut(s) 419, 590, 664
HpyCH4III ACNGT 3 cut(s) 33, 232, 274
HpyCH4IV ACGT 3 cut(s) 23, 75, 432
HpyCH4V TGCA 4 cut(s) 213, 621, 727, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 3 cut(s) 23, 75, 432
Hsp92II CATG 6 cut(s) 143, 161, 349, 517, 548, 621
HspAI GCGC 1 cut(s) 758
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 6 cut(s) 154, 276, 292, 614, 739, 775
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 3 cut(s) 569, 619, 736
MaeI CTAG 2 cut(s) 201, 462
MaeII ACGT 3 cut(s) 23, 75, 432
MaeIII GTNAC 2 cut(s) 337, 383
MalI GATC 6 cut(s) 156, 278, 294, 616, 741, 777
MboI GATC 6 cut(s) 154, 276, 292, 614, 739, 775
MboII GAAGA 4 cut(s) 106, 112, 155, 514
MflI RGATCY 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 484
MluCI AATT 2 cut(s) 252, 313
MluNI TGGCCA 1 cut(s) 484
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 9 cut(s) 87, 339, 380, 492, 625, 636, 660, 680, 700
Mox20I TGGCCA 1 cut(s) 484
MscI TGGCCA 1 cut(s) 484
MseI TTAA 4 cut(s) 227, 518, 663, 787
MslI CAYNNNNRTG 2 cut(s) 344, 475
Msp20I TGGCCA 1 cut(s) 484
MspR9I CCNGG 3 cut(s) 167, 732, 744
MvaI CCWGG 3 cut(s) 167, 732, 744
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 6 cut(s) 154, 276, 292, 614, 739, 775
NlaIII CATG 6 cut(s) 143, 161, 349, 517, 548, 621
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 517
OliI CACNNNNGTG 1 cut(s) 475
PaeR7I CTCGAG 1 cut(s) 640
PagI TCATGA 2 cut(s) 139, 157
PciI ACATGT 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 2 cut(s) 170, 281
PfoI TCCNGGA 2 cut(s) 730, 742
PkrI GCNGC 1 cut(s) 469
Ppu21I YACGTR 1 cut(s) 76
PscI ACATGT 1 cut(s) 513
Psp6I CCWGG 3 cut(s) 165, 730, 742
PspGI CCWGG 3 cut(s) 165, 730, 742
PspPI GGNCC 2 cut(s) 197, 367
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 4 cut(s) 35, 78, 422, 535
RsaNI GTAC 4 cut(s) 34, 77, 421, 534
RseI CAYNNNNRTG 2 cut(s) 344, 475
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 4 cut(s) 227, 518, 663, 787
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 6 cut(s) 154, 276, 292, 614, 739, 775
Sau96I GGNCC 2 cut(s) 197, 367
ScrFI CCNGG 3 cut(s) 167, 732, 744
SfaNI GCATC 3 cut(s) 569, 619, 736
SfcI CTRYAG 1 cut(s) 83
Sfr274I CTCGAG 1 cut(s) 640
SinI GGWCC 1 cut(s) 367
SlaI CTCGAG 1 cut(s) 640
SmiMI CAYNNNNRTG 2 cut(s) 344, 475
SmlI CTYRAG 2 cut(s) 330, 640
SmoI CTYRAG 2 cut(s) 330, 640
Sse9I AATT 2 cut(s) 252, 313
SspMI CTAG 2 cut(s) 201, 462
StyD4I CCNGG 3 cut(s) 165, 730, 742
TaaI ACNGT 3 cut(s) 33, 232, 274
TaiI ACGT 3 cut(s) 26, 78, 435
TaqI TCGA 6 cut(s) 186, 218, 279, 309, 613, 641
TaqII GACCGA 2 cut(s) 311, 355
TasI AATT 2 cut(s) 252, 313
TatI WGTACW 2 cut(s) 33, 533
TfiI GAWTC 2 cut(s) 170, 281
Tru1I TTAA 4 cut(s) 227, 518, 663, 787
Tru9I TTAA 4 cut(s) 227, 518, 663, 787
TscAI CASTG 2 cut(s) 199, 279
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 3 cut(s) 113, 128, 156
TspRI CASTG 2 cut(s) 199, 279
VpaK11BI GGWCC 1 cut(s) 367
XceI RCATGY 1 cut(s) 517
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 2 cut(s) 201, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.