Prupe.5G190700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000150
Physical Location & Seq
Reverse (-)
15654846 .. 15655850
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G190700.1

Sequence Viewer

Length: 423 bp
ATGGGGGATCGGTATATATCTCAAATTTCGGCCGCCGCCGCTGACCTCGCCTTGGGTCAAGGCCATACCTTGACGATGGCTTCACACCAAGATGAGCTACTCGGCAAGATATTGGCGATCGAGAAATCTCTGGGCAAGATATCGGAGATGGAGAAAACTCTGGGCCAACTGTTGGATTGGTTTAAATCAACAACGCAGGAGCTTCGCTTACTACGCCCCGGTCCACCCATAACAACGAGGCCGCTACCTTGCACGGTGATTGAAAACTACAATCCCAACCAAGAGGAGGCCTATGTTCTTTACCCAAGGTTACAGGAGGCTAGTATGAGTCAGCCAAAACAAGAAGAAATAACCGCCAGGAAGCCGGAGATAGAAGCCATGCAGCATGAAGAAGCCACTGATGTCCCAATCAGTTATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.73

Weight (kDa)

4.94

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AciI CCGC 5 cut(s) 33, 36, 39, 242, 354
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 24
AfiI CCNNNNNNNGG 3 cut(s) 52, 172, 286
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 2 cut(s) 97, 202
AluI AGCT 2 cut(s) 97, 202
AlwI GGATC 1 cut(s) 15
AoxI GGCC 5 cut(s) 30, 61, 163, 239, 288
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 163, 221
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 70, 142
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 358
BcnI CCSGG 1 cut(s) 219
BfaI CTAG 2 cut(s) 321, 421
BisI GCNGC 5 cut(s) 33, 36, 39, 242, 383
BlsI GCNGC 5 cut(s) 34, 37, 40, 243, 384
Bme1390I CCNGG 2 cut(s) 219, 358
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 163, 221
BmrFI CCNGG 2 cut(s) 219, 358
BpuMI CCSGG 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 51, 217, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 172, 286
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 3 cut(s) 51, 217, 305
BseLI CCNNNNNNNGG 3 cut(s) 52, 172, 286
BseRI GAGGAG 1 cut(s) 299
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 394
Bsh1285I CGRYCG 2 cut(s) 33, 120
BshFI GGCC 5 cut(s) 32, 63, 165, 241, 290
BsiEI CGRYCG 2 cut(s) 33, 120
BsiSI CCGG 2 cut(s) 219, 365
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 3 cut(s) 52, 172, 286
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 5 cut(s) 32, 63, 165, 241, 290
Bsp143I GATC 2 cut(s) 7, 117
BspACI CCGC 5 cut(s) 33, 36, 39, 242, 354
BspANI GGCC 5 cut(s) 32, 63, 165, 241, 290
BspPI GGATC 1 cut(s) 15
BssECI CCNNGG 3 cut(s) 51, 217, 305
BssMI GATC 2 cut(s) 7, 117
BssT1I CCWWGG 2 cut(s) 51, 305
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 2 cut(s) 171, 256
BstKTI GATC 2 cut(s) 10, 120
BstMBI GATC 2 cut(s) 7, 117
BstMCI CGRYCG 2 cut(s) 33, 120
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 213
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 2 cut(s) 217, 356
BstV1I GCAGC 1 cut(s) 394
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 5 cut(s) 32, 63, 165, 241, 290
BtsIMutI CAGTG 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 163, 221
CviAII CATG 2 cut(s) 379, 386
DpnI GATC 2 cut(s) 9, 119
DpnII GATC 2 cut(s) 7, 117
DraI TTTAAA 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 51, 305
Eco147I AGGCCT 1 cut(s) 290
Eco32I GATATC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 221
Eco52I CGGCCG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 356
EcoRV GATATC 1 cut(s) 141
EcoT14I CCWWGG 2 cut(s) 51, 305
ErhI CCWWGG 2 cut(s) 51, 305
FaeI CATG 2 cut(s) 382, 389
FaiI YATR 8 cut(s) 15, 17, 66, 230, 294, 326, 380, 387
FaqI GGGAC 1 cut(s) 389
FatI CATG 2 cut(s) 378, 385
Fnu4HI GCNGC 5 cut(s) 33, 36, 39, 242, 383
Fsp4HI GCNGC 5 cut(s) 33, 36, 39, 242, 383
FspBI CTAG 2 cut(s) 321, 421
GluI GCNGC 5 cut(s) 33, 36, 39, 242, 383
HaeIII GGCC 5 cut(s) 32, 63, 165, 241, 290
HapII CCGG 2 cut(s) 219, 365
Hin1II CATG 2 cut(s) 382, 389
HinfI GANTC 1 cut(s) 328
HpaII CCGG 2 cut(s) 219, 365
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 171, 256
HpyCH4V TGCA 2 cut(s) 252, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 213
Hsp92II CATG 2 cut(s) 382, 389
Kzo9I GATC 2 cut(s) 7, 117
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 8 cut(s) 116, 146, 182, 232, 299, 343, 370, 378
Lsp1109I GCAGC 1 cut(s) 394
MaeI CTAG 2 cut(s) 321, 421
MaeIII GTNAC 1 cut(s) 309
MalI GATC 2 cut(s) 9, 119
MboI GATC 2 cut(s) 7, 117
MboII GAAGA 2 cut(s) 356, 401
MluCI AATT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 5 cut(s) 56, 231, 277, 280, 310
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 2 cut(s) 219, 365
MspR9I CCNGG 2 cut(s) 219, 358
MvaI CCWGG 1 cut(s) 358
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 213
NciI CCSGG 1 cut(s) 219
NdeII GATC 2 cut(s) 7, 117
NlaIII CATG 2 cut(s) 382, 389
NmeAIII GCCGAG 1 cut(s) 81
PceI AGGCCT 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 5 cut(s) 34, 37, 40, 243, 384
Ple19I CGATCG 1 cut(s) 120
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspPI GGNCC 2 cut(s) 163, 221
PvuI CGATCG 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 5 cut(s) 33, 36, 39, 242, 383
Sau3AI GATC 2 cut(s) 7, 117
Sau96I GGNCC 2 cut(s) 163, 221
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 2 cut(s) 219, 358
SetI ASST 6 cut(s) 48, 71, 99, 204, 250, 311
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 1 cut(s) 24
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 5 cut(s) 33, 36, 39, 242, 354
SspMI CTAG 2 cut(s) 321, 421
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 217, 356
StyI CCWWGG 2 cut(s) 51, 305
TaaI ACNGT 2 cut(s) 171, 256
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 24
TauI GCSGC 4 cut(s) 35, 38, 41, 244
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 403
TseI GCWGC 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 402
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 1 cut(s) 24
XspI CTAG 2 cut(s) 321, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.