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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 393 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 29 |
| Acc16I | TGCGCA | 1 cut(s) | 962 |
| AccI | GTMKAC | 1 cut(s) | 1067 |
| AccII | CGCG | 1 cut(s) | 476 |
| AciI | CCGC | 2 cut(s) | 476, 657 |
| AclI | AACGTT | 1 cut(s) | 272 |
| AclWI | GGATC | 1 cut(s) | 1026 |
| AcoI | YGGCCR | 1 cut(s) | 703 |
| AcsI | RAATTY | 2 cut(s) | 155, 400 |
| AfaI | GTAC | 3 cut(s) | 18, 52, 221 |
| AgsI | TTSAA | 5 cut(s) | 193, 434, 693, 901, 1025 |
| AjnI | CCWGG | 1 cut(s) | 133 |
| AluBI | AGCT | 6 cut(s) | 331, 526, 671, 848, 883, 999 |
| AluI | AGCT | 6 cut(s) | 331, 526, 671, 848, 883, 999 |
| Alw26I | GTCTC | 1 cut(s) | 879 |
| AlwI | GGATC | 1 cut(s) | 1026 |
| AoxI | GGCC | 3 cut(s) | 450, 612, 703 |
| ApeKI | GCWGC | 2 cut(s) | 848, 851 |
| ApoI | RAATTY | 2 cut(s) | 155, 400 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 365, 397, 790, 822 |
| AseI | ATTAAT | 1 cut(s) | 990 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 75, 142 |
| AspLEI | GCGC | 1 cut(s) | 963 |
| AspS9I | GGNCC | 3 cut(s) | 61, 451, 612 |
| AsuHPI | GGTGA | 1 cut(s) | 883 |
| AvaII | GGWCC | 1 cut(s) | 61 |
| BaeGI | GKGCMC | 1 cut(s) | 1098 |
| BanII | GRGCYC | 1 cut(s) | 183 |
| BauI | CACGAG | 1 cut(s) | 441 |
| BbsI | GAAGAC | 3 cut(s) | 727, 830, 873 |
| BbvI | GCAGC | 2 cut(s) | 835, 838 |
| BccI | CCATC | 3 cut(s) | 679, 695, 908 |
| BceAI | ACGGC | 3 cut(s) | 502, 599, 690 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 35 |
| BciT130I | CCWGG | 1 cut(s) | 135 |
| BciVI | GTATCC | 1 cut(s) | 100 |
| BcoDI | GTCTC | 1 cut(s) | 879 |
| BfaI | CTAG | 8 cut(s) | 8, 258, 287, 506, 576, 945, 1056, 1086 |
| BfuI | GTATCC | 1 cut(s) | 100 |
| BisI | GCNGC | 2 cut(s) | 849, 852 |
| BlsI | GCNGC | 2 cut(s) | 850, 853 |
| BmcAI | AGTACT | 1 cut(s) | 52 |
| Bme1390I | CCNGG | 1 cut(s) | 135 |
| Bme18I | GGWCC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 3 cut(s) | 61, 451, 612 |
| BmiI | GGNNCC | 2 cut(s) | 63, 919 |
| BmrFI | CCNGG | 1 cut(s) | 135 |
| BmrI | ACTGGG | 1 cut(s) | 344 |
| BmsI | GCATC | 5 cut(s) | 299, 353, 357, 568, 574 |
| BmuI | ACTGGG | 1 cut(s) | 344 |
| BpiI | GAAGAC | 3 cut(s) | 727, 830, 873 |
| BpuEI | CTTGAG | 1 cut(s) | 861 |
| BsaJI | CCNNGG | 1 cut(s) | 615 |
| Bse1I | ACTGG | 3 cut(s) | 299, 350, 731 |
| Bse3DI | GCAATG | 1 cut(s) | 19 |
| BseBI | CCWGG | 1 cut(s) | 135 |
| BseDI | CCNNGG | 1 cut(s) | 615 |
| BseGI | GGATG | 2 cut(s) | 344, 703 |
| BseMI | GCAATG | 1 cut(s) | 19 |
| BseMII | CTCAG | 1 cut(s) | 792 |
| BseNI | ACTGG | 3 cut(s) | 299, 350, 731 |
| BseRI | GAGGAG | 1 cut(s) | 1052 |
| BseSI | GKGCMC | 1 cut(s) | 1098 |
| BseXI | GCAGC | 2 cut(s) | 835, 838 |
| Bsh1236I | CGCG | 1 cut(s) | 476 |
| BshFI | GGCC | 3 cut(s) | 452, 614, 705 |
| BslFI | GGGAC | 1 cut(s) | 47 |
| BsmAI | GTCTC | 1 cut(s) | 879 |
| BsmFI | GGGAC | 1 cut(s) | 47 |
| BsmI | GAATGC | 1 cut(s) | 1016 |
| BsnI | GGCC | 3 cut(s) | 452, 614, 705 |
| Bsp1286I | GDGCHC | 2 cut(s) | 183, 1098 |
| Bsp143I | GATC | 1 cut(s) | 1018 |
| BspACI | CCGC | 2 cut(s) | 476, 657 |
| BspANI | GGCC | 3 cut(s) | 452, 614, 705 |
| BspCNI | CTCAG | 1 cut(s) | 793 |
| BspFNI | CGCG | 1 cut(s) | 476 |
| BspHI | TCATGA | 1 cut(s) | 681 |
| BspLI | GGNNCC | 2 cut(s) | 63, 919 |
| BspPI | GGATC | 1 cut(s) | 1026 |
| BsrDI | GCAATG | 1 cut(s) | 19 |
| BsrI | ACTGG | 3 cut(s) | 299, 350, 731 |
| BssECI | CCNNGG | 1 cut(s) | 615 |
| BssMI | GATC | 1 cut(s) | 1018 |
| BssSI | CACGAG | 1 cut(s) | 441 |
| Bst2BI | CACGAG | 1 cut(s) | 441 |
| Bst2UI | CCWGG | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 4 cut(s) | 118, 188, 654, 788 |
| BstC8I | GCNNGC | 1 cut(s) | 329 |
| BstDEI | CTNAG | 2 cut(s) | 294, 801 |
| BstDSI | CCRYGG | 1 cut(s) | 615 |
| BstF5I | GGATG | 2 cut(s) | 344, 703 |
| BstFNI | CGCG | 1 cut(s) | 476 |
| BstHHI | GCGC | 1 cut(s) | 963 |
| BstKTI | GATC | 1 cut(s) | 1021 |
| BstMAI | GTCTC | 1 cut(s) | 879 |
| BstMBI | GATC | 1 cut(s) | 1018 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 98 |
| BstNI | CCWGG | 1 cut(s) | 135 |
| BstSCI | CCNGG | 1 cut(s) | 133 |
| BstSLI | GKGCMC | 1 cut(s) | 1098 |
| BstUI | CGCG | 1 cut(s) | 476 |
| BstV1I | GCAGC | 2 cut(s) | 835, 838 |
| BstV2I | GAAGAC | 3 cut(s) | 727, 830, 873 |
| BstX2I | RGATCY | 1 cut(s) | 1018 |
| BstYI | RGATCY | 1 cut(s) | 1018 |
| BsuI | GTATCC | 1 cut(s) | 100 |
| BsuRI | GGCC | 3 cut(s) | 452, 614, 705 |
| BtgI | CCRYGG | 1 cut(s) | 615 |
| BtsCI | GGATG | 2 cut(s) | 344, 703 |
| BtsIMutI | CAGTG | 1 cut(s) | 659 |
| Cac8I | GCNNGC | 1 cut(s) | 329 |
| CciI | TCATGA | 1 cut(s) | 681 |
| CfoI | GCGC | 1 cut(s) | 963 |
| Cfr13I | GGNCC | 3 cut(s) | 61, 451, 612 |
| CseI | GACGC | 1 cut(s) | 269 |
| Csp6I | GTAC | 3 cut(s) | 17, 51, 220 |
| CviAII | CATG | 5 cut(s) | 457, 682, 911, 922, 1015 |
| CviQI | GTAC | 3 cut(s) | 17, 51, 220 |
| DdeI | CTNAG | 2 cut(s) | 294, 801 |
| DpnI | GATC | 1 cut(s) | 1020 |
| DpnII | GATC | 1 cut(s) | 1018 |
| DraI | TTTAAA | 1 cut(s) | 775 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 29 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 29 |
| EaeI | YGGCCR | 1 cut(s) | 703 |
| Eco24I | GRGCYC | 1 cut(s) | 183 |
| Eco47I | GGWCC | 1 cut(s) | 61 |
| EcoRII | CCWGG | 1 cut(s) | 133 |
| EcoT22I | ATGCAT | 2 cut(s) | 927, 1016 |
| EcoT38I | GRGCYC | 1 cut(s) | 183 |
| FaeI | CATG | 5 cut(s) | 460, 685, 914, 925, 1018 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 571, 603 |
| FaqI | GGGAC | 1 cut(s) | 47 |
| FatI | CATG | 5 cut(s) | 456, 681, 910, 921, 1014 |
| FauI | CCCGC | 1 cut(s) | 650 |
| FblI | GTMKAC | 1 cut(s) | 1067 |
| Fnu4HI | GCNGC | 2 cut(s) | 849, 852 |
| FokI | GGATG | 2 cut(s) | 331, 710 |
| FriOI | GRGCYC | 1 cut(s) | 183 |
| Fsp4HI | GCNGC | 2 cut(s) | 849, 852 |
| FspBI | CTAG | 8 cut(s) | 8, 258, 287, 506, 576, 945, 1056, 1086 |
| FspI | TGCGCA | 1 cut(s) | 962 |
| GlaI | GCGC | 1 cut(s) | 962 |
| GluI | GCNGC | 2 cut(s) | 849, 852 |
| HaeIII | GGCC | 3 cut(s) | 452, 614, 705 |
| HgaI | GACGC | 1 cut(s) | 269 |
| HhaI | GCGC | 1 cut(s) | 963 |
| Hin1II | CATG | 5 cut(s) | 460, 685, 914, 925, 1018 |
| Hin6I | GCGC | 1 cut(s) | 961 |
| HinP1I | GCGC | 1 cut(s) | 961 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HinfI | GANTC | 6 cut(s) | 224, 407, 416, 689, 872, 941 |
| HphI | GGTGA | 1 cut(s) | 883 |
| Hpy166II | GTNNAC | 3 cut(s) | 205, 625, 1068 |
| Hpy188I | TCNGA | 4 cut(s) | 406, 798, 940, 1050 |
| Hpy188III | TCNNGA | 5 cut(s) | 443, 682, 878, 931, 1022 |
| Hpy8I | GTNNAC | 3 cut(s) | 205, 625, 1068 |
| HpyAV | CCTTC | 3 cut(s) | 80, 170, 655 |
| HpyCH4III | ACNGT | 4 cut(s) | 118, 188, 654, 788 |
| HpyCH4IV | ACGT | 2 cut(s) | 242, 272 |
| HpyCH4V | TGCA | 4 cut(s) | 344, 861, 925, 1014 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 98 |
| HpyF3I | CTNAG | 2 cut(s) | 294, 801 |
| HpySE526I | ACGT | 2 cut(s) | 242, 272 |
| Hsp92II | CATG | 5 cut(s) | 460, 685, 914, 925, 1018 |
| HspAI | GCGC | 1 cut(s) | 961 |
| Kzo9I | GATC | 1 cut(s) | 1018 |
| Lsp1109I | GCAGC | 2 cut(s) | 835, 838 |
| LweI | GCATC | 5 cut(s) | 299, 353, 357, 568, 574 |
| MaeI | CTAG | 8 cut(s) | 8, 258, 287, 506, 576, 945, 1056, 1086 |
| MaeII | ACGT | 2 cut(s) | 242, 272 |
| MaeIII | GTNAC | 8 cut(s) | 31, 118, 212, 443, 470, 482, 782, 889 |
| MalI | GATC | 1 cut(s) | 1020 |
| MboI | GATC | 1 cut(s) | 1018 |
| MboII | GAAGA | 4 cut(s) | 135, 727, 830, 878 |
| MflI | RGATCY | 1 cut(s) | 1018 |
| MhlI | GDGCHC | 2 cut(s) | 183, 1098 |
| MluCI | AATT | 4 cut(s) | 155, 400, 903, 991 |
| MlyI | GAGTC | 2 cut(s) | 218, 881 |
| MmeI | TCCRAC | 2 cut(s) | 807, 821 |
| MnlI | CCTC | 4 cut(s) | 294, 603, 760, 1030 |
| Mph1103I | ATGCAT | 2 cut(s) | 927, 1016 |
| MroXI | GAANNNNTTC | 2 cut(s) | 75, 142 |
| MseI | TTAA | 9 cut(s) | 275, 537, 750, 762, 774, 792, 966, 990, 1102 |
| MslI | CAYNNNNRTG | 2 cut(s) | 365, 1009 |
| MspR9I | CCNGG | 1 cut(s) | 135 |
| Mva1269I | GAATGC | 1 cut(s) | 1016 |
| MvaI | CCWGG | 1 cut(s) | 135 |
| MvnI | CGCG | 1 cut(s) | 476 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 98 |
| NdeII | GATC | 1 cut(s) | 1018 |
| NlaIII | CATG | 5 cut(s) | 460, 685, 914, 925, 1018 |
| NlaIV | GGNNCC | 2 cut(s) | 63, 919 |
| NmuCI | GTSAC | 4 cut(s) | 31, 118, 443, 889 |
| NsbI | TGCGCA | 1 cut(s) | 962 |
| NsiI | ATGCAT | 2 cut(s) | 927, 1016 |
| PagI | TCATGA | 1 cut(s) | 681 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 27 |
| PctI | GAATGC | 1 cut(s) | 1016 |
| PdmI | GAANNNNTTC | 2 cut(s) | 75, 142 |
| PfeI | GAWTC | 4 cut(s) | 407, 416, 689, 941 |
| PflFI | GACNNNGTC | 2 cut(s) | 26, 259 |
| PkrI | GCNGC | 2 cut(s) | 850, 853 |
| PleI | GAGTC | 2 cut(s) | 218, 880 |
| PpsI | GAGTC | 2 cut(s) | 218, 880 |
| PshBI | ATTAAT | 1 cut(s) | 990 |
| PsiI | TTATAA | 1 cut(s) | 393 |
| Psp1406I | AACGTT | 1 cut(s) | 272 |
| Psp6I | CCWGG | 1 cut(s) | 133 |
| PspGI | CCWGG | 1 cut(s) | 133 |
| PspN4I | GGNNCC | 2 cut(s) | 63, 919 |
| PspPI | GGNCC | 3 cut(s) | 61, 451, 612 |
| PsuI | RGATCY | 1 cut(s) | 1018 |
| PsyI | GACNNNGTC | 2 cut(s) | 26, 259 |
| RsaI | GTAC | 3 cut(s) | 18, 52, 221 |
| RsaNI | GTAC | 3 cut(s) | 17, 51, 220 |
| RseI | CAYNNNNRTG | 2 cut(s) | 365, 1009 |
| SaqAI | TTAA | 9 cut(s) | 275, 537, 750, 762, 774, 792, 966, 990, 1102 |
| SatI | GCNGC | 2 cut(s) | 849, 852 |
| Sau3AI | GATC | 1 cut(s) | 1018 |
| Sau96I | GGNCC | 3 cut(s) | 61, 451, 612 |
| ScaI | AGTACT | 1 cut(s) | 52 |
| SchI | GAGTC | 2 cut(s) | 218, 881 |
| ScrFI | CCNGG | 1 cut(s) | 135 |
| SduI | GDGCHC | 2 cut(s) | 183, 1098 |
| SfaNI | GCATC | 5 cut(s) | 299, 353, 357, 568, 574 |
| SinI | GGWCC | 1 cut(s) | 61 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 365, 1009 |
| SmlI | CTYRAG | 1 cut(s) | 876 |
| SmoI | CTYRAG | 1 cut(s) | 876 |
| Sse9I | AATT | 4 cut(s) | 155, 400, 903, 991 |
| SsiI | CCGC | 2 cut(s) | 476, 657 |
| SspI | AATATT | 4 cut(s) | 74, 340, 437, 571 |
| SspMI | CTAG | 8 cut(s) | 8, 258, 287, 506, 576, 945, 1056, 1086 |
| StyD4I | CCNGG | 1 cut(s) | 133 |
| TaaI | ACNGT | 4 cut(s) | 118, 188, 654, 788 |
| TaiI | ACGT | 2 cut(s) | 245, 275 |
| TaqI | TCGA | 3 cut(s) | 21, 79, 517 |
| TasI | AATT | 4 cut(s) | 155, 400, 903, 991 |
| TatI | WGTACW | 2 cut(s) | 16, 50 |
| TfiI | GAWTC | 4 cut(s) | 407, 416, 689, 941 |
| Tru1I | TTAA | 9 cut(s) | 275, 537, 750, 762, 774, 792, 966, 990, 1102 |
| Tru9I | TTAA | 9 cut(s) | 275, 537, 750, 762, 774, 792, 966, 990, 1102 |
| TscAI | CASTG | 1 cut(s) | 659 |
| TseFI | GTSAC | 4 cut(s) | 31, 118, 443, 889 |
| TseI | GCWGC | 2 cut(s) | 848, 851 |
| Tsp45I | GTSAC | 4 cut(s) | 31, 118, 443, 889 |
| TspDTI | ATGAA | 5 cut(s) | 84, 189, 294, 349, 803 |
| TspRI | CASTG | 1 cut(s) | 659 |
| Tth111I | GACNNNGTC | 2 cut(s) | 26, 259 |
| VpaK11BI | GGWCC | 1 cut(s) | 61 |
| VspI | ATTAAT | 1 cut(s) | 990 |
| XapI | RAATTY | 2 cut(s) | 155, 400 |
| XmiI | GTMKAC | 1 cut(s) | 1067 |
| XmnI | GAANNNNTTC | 2 cut(s) | 75, 142 |
| XspI | CTAG | 8 cut(s) | 8, 258, 287, 506, 576, 945, 1056, 1086 |
| ZrmI | AGTACT | 1 cut(s) | 52 |
| Zsp2I | ATGCAT | 2 cut(s) | 927, 1016 |