Rmu_sc0000556.1_g000038

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000556.1
OG0000150
Physical Location & Seq
Forward (+)
174610 .. 175613
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000556.1_g000038.1.cds

Sequence Viewer

Length: 870 bp
atgagcgagaacaaacctaaatcagtttttgtcatggctcacttaggctttcatgcccaataccatggtgcagtttatgaaatagaattcgagaaaattgagaaactagagaaacaagagtatgaagattctgtaggcggctttggtgttgatccatctactctgccactaatcgacccggtattggagttctttgatgggaggtgggagatcccggagatctgtatattccatggtgcgaggtttggctccaaggtatacaccatgttaaatgaaatcaagtggccttatcgctcgcccttcagacccaccgatgcatttttctttgacacaagtaacttagactctgatgttcagcagatctctccgcctaaaacacccaagacatggttattctctagaccagttccaaacgatgatatcaggtcatgctgtttgttatggttaaaagctcaggcgtatccgccatccagattacatggagtgaggactcagaaattggttcatatgggaaggcgggacttttgccttgtgcagacgggtctgaacagggattctctcgagcatcaatatcttgttgtcaccacctttcgaattgtcggtgaaggacaaaaaatgtatatcaagacccaacgttcatcagtttttcgagttgccatccacggccatggaagttttgatattgttttcagcttcgcgccagattgtaaggacattgaaccggaagaaggagagtataataaaactactgcactgacccaaagtgaaagtcttgcgtggacttcgaaggtgaaagaggattttttttcgtttcccactggccccaaactaggattgaagggatggaactactgcactgacccaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

33.21

Weight (kDa)

6.32

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 387
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 698
AciI CCGC 4 cut(s) 138, 368, 464, 517
AclI AACGTT 1 cut(s) 634
AclWI GGATC 2 cut(s) 146, 205
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 286
AfiI CCNNNNNNNGG 4 cut(s) 184, 387, 728, 830
AgsI TTSAA 2 cut(s) 719, 838
AluBI AGCT 2 cut(s) 452, 693
AluI AGCT 2 cut(s) 452, 693
AlwI GGATC 2 cut(s) 146, 205
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 3 cut(s) 284, 664, 820
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
AspLEI GCGC 1 cut(s) 700
AspS9I GGNCC 1 cut(s) 821
AsuC2I CCSGG 2 cut(s) 179, 215
AsuHPI GGTGA 3 cut(s) 574, 614, 802
AsuII TTCGAA 2 cut(s) 592, 785
AvaI CYCGRG 1 cut(s) 560
BccI CCATC 5 cut(s) 163, 191, 475, 665, 837
BceAI ACGGC 1 cut(s) 679
BciVI GTATCC 1 cut(s) 471
BcnI CCSGG 2 cut(s) 179, 215
BfaI CTAG 3 cut(s) 107, 399, 830
BfmI CTRYAG 1 cut(s) 132
BfuI GTATCC 1 cut(s) 471
BglII AGATCT 2 cut(s) 219, 360
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 179, 215
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 2 cut(s) 250, 823
BmrFI CCNGG 2 cut(s) 179, 215
BmsI GCATC 2 cut(s) 304, 574
Bpu10I CCTNAGC 1 cut(s) 453
Bpu14I TTCGAA 2 cut(s) 592, 785
BpuMI CCSGG 2 cut(s) 179, 215
BsaJI CCNNGG 5 cut(s) 64, 232, 252, 661, 667
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 387, 728, 830
Bse1I ACTGG 2 cut(s) 404, 823
BseDI CCNNGG 5 cut(s) 64, 232, 252, 661, 667
BseGI GGATG 3 cut(s) 467, 657, 848
BseLI CCNNNNNNNGG 4 cut(s) 184, 387, 728, 830
BseMII CTCAG 2 cut(s) 467, 506
BseNI ACTGG 2 cut(s) 404, 823
BsgI GTGCAG 4 cut(s) 90, 554, 735, 838
Bsh1236I CGCG 1 cut(s) 698
BshFI GGCC 3 cut(s) 286, 666, 822
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 3 cut(s) 179, 215, 722
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 4 cut(s) 184, 387, 728, 830
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 3 cut(s) 286, 666, 822
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 2 cut(s) 592, 785
Bsp143I GATC 4 cut(s) 151, 210, 219, 360
Bsp19I CCATGG 3 cut(s) 64, 232, 667
BspACI CCGC 4 cut(s) 138, 368, 464, 517
BspANI GGCC 3 cut(s) 286, 666, 822
BspCNI CTCAG 2 cut(s) 466, 505
BspFNI CGCG 1 cut(s) 698
BspLI GGNNCC 2 cut(s) 250, 823
BspPI GGATC 2 cut(s) 146, 205
BspT104I TTCGAA 2 cut(s) 592, 785
BsrI ACTGG 2 cut(s) 404, 823
BssECI CCNNGG 5 cut(s) 64, 232, 252, 661, 667
BssMI GATC 4 cut(s) 151, 210, 219, 360
BssNAI GTATAC 1 cut(s) 259
BssT1I CCWWGG 4 cut(s) 64, 232, 252, 667
Bst1107I GTATAC 1 cut(s) 259
BstBI TTCGAA 2 cut(s) 592, 785
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 4 cut(s) 43, 340, 453, 492
BstDSI CCRYGG 4 cut(s) 64, 232, 661, 667
BstF5I GGATG 3 cut(s) 467, 657, 848
BstFNI CGCG 1 cut(s) 698
BstHHI GCGC 1 cut(s) 700
BstKTI GATC 4 cut(s) 154, 213, 222, 363
BstMBI GATC 4 cut(s) 151, 210, 219, 360
BstSCI CCNGG 2 cut(s) 177, 213
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 698
BstX2I RGATCY 3 cut(s) 210, 219, 360
BstXI CCANNNNNNTGG 2 cut(s) 65, 668
BstYI RGATCY 3 cut(s) 210, 219, 360
BstZ17I GTATAC 1 cut(s) 259
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 3 cut(s) 286, 666, 822
BtgI CCRYGG 4 cut(s) 64, 232, 661, 667
BtsCI GGATG 3 cut(s) 467, 657, 848
BtsIMutI CAGTG 3 cut(s) 752, 816, 855
Cac8I GCNNGC 1 cut(s) 296
CfoI GCGC 1 cut(s) 700
Cfr13I GGNCC 1 cut(s) 821
CviAII CATG 9 cut(s) 34, 53, 65, 233, 265, 387, 429, 479, 668
CviJI RGCY 9 cut(s) 38, 48, 141, 249, 286, 452, 666, 693, 822
CviKI_1 RGCY 9 cut(s) 38, 48, 141, 249, 286, 452, 666, 693, 822
DdeI CTNAG 4 cut(s) 43, 340, 453, 492
DpnI GATC 4 cut(s) 153, 212, 221, 362
DpnII GATC 4 cut(s) 151, 210, 219, 360
EaeI YGGCCR 1 cut(s) 664
EciI GGCGGA 2 cut(s) 357, 453
Eco130I CCWWGG 4 cut(s) 64, 232, 252, 667
Eco32I GATATC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 86
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 4 cut(s) 64, 232, 252, 667
EcoT22I ATGCAT 1 cut(s) 319
ErhI CCWWGG 4 cut(s) 64, 232, 252, 667
FaeI CATG 9 cut(s) 37, 56, 68, 236, 268, 390, 432, 482, 671
FaqI GGGAC 1 cut(s) 533
FatI CATG 9 cut(s) 33, 52, 64, 232, 264, 386, 428, 478, 667
FauI CCCGC 1 cut(s) 510
FauNDI CATATG 1 cut(s) 507
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 139
FokI GGATG 3 cut(s) 454, 644, 855
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 3 cut(s) 107, 399, 830
GlaI GCGC 1 cut(s) 699
GluI GCNGC 1 cut(s) 139
HaeIII GGCC 3 cut(s) 286, 666, 822
HapII CCGG 3 cut(s) 179, 215, 722
HhaI GCGC 1 cut(s) 700
Hin1II CATG 9 cut(s) 37, 56, 68, 236, 268, 390, 432, 482, 671
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HinfI GANTC 4 cut(s) 128, 344, 490, 554
HpaII CCGG 3 cut(s) 179, 215, 722
HphI GGTGA 3 cut(s) 574, 614, 802
Hpy166II GTNNAC 2 cut(s) 259, 780
Hpy188I TCNGA 4 cut(s) 305, 349, 495, 546
Hpy188III TCNNGA 5 cut(s) 91, 399, 471, 560, 625
Hpy8I GTNNAC 2 cut(s) 259, 780
HpyAV CCTTC 6 cut(s) 310, 507, 599, 722, 781, 832
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 5 cut(s) 71, 317, 535, 752, 855
HpyF3I CTNAG 4 cut(s) 43, 340, 453, 492
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 9 cut(s) 37, 56, 68, 236, 268, 390, 432, 482, 671
HspAI GCGC 1 cut(s) 698
Kzo9I GATC 4 cut(s) 151, 210, 219, 360
LmnI GCTCC 1 cut(s) 254
LweI GCATC 2 cut(s) 304, 574
MaeI CTAG 3 cut(s) 107, 399, 830
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 2 cut(s) 335, 580
MalI GATC 4 cut(s) 153, 212, 221, 362
MboI GATC 4 cut(s) 151, 210, 219, 360
MboII GAAGA 2 cut(s) 137, 737
MflI RGATCY 3 cut(s) 210, 219, 360
MluCI AATT 4 cut(s) 86, 96, 497, 594
MlyI GAGTC 2 cut(s) 338, 484
MnlI CCTC 4 cut(s) 195, 234, 480, 790
Mph1103I ATGCAT 1 cut(s) 319
MseI TTAA 2 cut(s) 269, 446
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 3 cut(s) 179, 215, 722
MspR9I CCNGG 2 cut(s) 179, 215
MvnI CGCG 1 cut(s) 698
NciI CCSGG 2 cut(s) 179, 215
NcoI CCATGG 3 cut(s) 64, 232, 667
NdeI CATATG 1 cut(s) 507
NdeII GATC 4 cut(s) 151, 210, 219, 360
NlaIII CATG 9 cut(s) 37, 56, 68, 236, 268, 390, 432, 482, 671
NlaIV GGNNCC 2 cut(s) 250, 823
NmuCI GTSAC 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 319
NspV TTCGAA 2 cut(s) 592, 785
PaeR7I CTCGAG 1 cut(s) 560
PfeI GAWTC 2 cut(s) 128, 554
PflMI CCANNNNNTGG 1 cut(s) 387
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 2 cut(s) 338, 484
PpsI GAGTC 2 cut(s) 338, 484
Psp1406I AACGTT 1 cut(s) 634
PspN4I GGNNCC 2 cut(s) 250, 823
PspPI GGNCC 1 cut(s) 821
PsuI RGATCY 3 cut(s) 210, 219, 360
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 2 cut(s) 269, 446
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 4 cut(s) 151, 210, 219, 360
Sau96I GGNCC 1 cut(s) 821
SchI GAGTC 2 cut(s) 338, 484
ScrFI CCNGG 2 cut(s) 179, 215
SfaNI GCATC 2 cut(s) 304, 574
SfcI CTRYAG 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 560
SfuI TTCGAA 2 cut(s) 592, 785
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 4 cut(s) 86, 96, 497, 594
SsiI CCGC 4 cut(s) 138, 368, 464, 517
SspMI CTAG 3 cut(s) 107, 399, 830
StyD4I CCNGG 2 cut(s) 177, 213
StyI CCWWGG 4 cut(s) 64, 232, 252, 667
TaiI ACGT 1 cut(s) 637
TaqI TCGA 6 cut(s) 90, 174, 561, 592, 649, 785
TasI AATT 4 cut(s) 86, 96, 497, 594
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 2 cut(s) 128, 554
Tru1I TTAA 2 cut(s) 269, 446
Tru9I TTAA 2 cut(s) 269, 446
TscAI CASTG 3 cut(s) 759, 823, 862
TseFI GTSAC 1 cut(s) 580
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 6 cut(s) 41, 93, 138, 288, 494, 627
TspRI CASTG 3 cut(s) 759, 823, 862
Van91I CCANNNNNTGG 1 cut(s) 387
XapI RAATTY 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 3 cut(s) 107, 399, 830
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.