Rroxscaffold_2G00080740

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
3681410 .. 3681943
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080740.1

Sequence Viewer

Length: 414 bp
ATGAGGATGGGGGCTAGTTCTTGTAATGTTTCTTGTATTCTTGTTGGTAATCTGGTGTGTCCCGAAGGCCAAGTTTGGAGAGAACAAGACAGTAAGAAACCCAATCACTCCGCCAAAGATACTTCAATAATCTCTTCCGCCTCTCACCATTGCTTGAAAACCCTAGAGTACTTATCCTACAGAGTTTTTCTCTTCCGCCTCTTCCGCCAAAGTACTTCAGCTTCACACCGTAAGGACTGCAAGGATATTGAACCAGAAGAACAATACTGTCCAACTGCATCAGCTGGAAGTAAAAGTGAAAGTGCATTGACTTCAGAAGAAAAAGGAAATAAAGATCATTGTAGGTGGGATGTTGCAACTGGAAAACAAGAGGACTTCTTCTCCTTTCCAACCAAACCGCTTATTCCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.35

Weight (kDa)

7.6

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 111, 138, 196, 205, 398
AcuI CTGAAG 2 cut(s) 201, 297
AfaI GTAC 2 cut(s) 170, 214
AgsI TTSAA 3 cut(s) 126, 157, 251
AluBI AGCT 3 cut(s) 221, 284, 411
AluI AGCT 3 cut(s) 221, 284, 411
AoxI GGCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 137
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BfaI CTAG 3 cut(s) 15, 164, 412
BfmI CTRYAG 1 cut(s) 178
BmcAI AGTACT 2 cut(s) 170, 214
BmsI GCATC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bse1I ACTGG 1 cut(s) 364
Bse3DI GCAATG 1 cut(s) 148
BseGI GGATG 2 cut(s) 12, 355
BseMI GCAATG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 364
BshFI GGCC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 5 cut(s) 111, 138, 196, 205, 398
BspANI GGCC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 364
BssMI GATC 1 cut(s) 334
Bst4CI ACNGT 3 cut(s) 92, 230, 269
Bst6I CTCTTC 3 cut(s) 139, 197, 206
BstF5I GGATG 2 cut(s) 12, 355
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 178
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 2 cut(s) 12, 355
Csp6I GTAC 2 cut(s) 169, 213
CviJI RGCY 5 cut(s) 14, 69, 221, 284, 411
CviKI_1 RGCY 5 cut(s) 14, 69, 221, 284, 411
CviQI GTAC 2 cut(s) 169, 213
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eam1104I CTCTTC 3 cut(s) 139, 197, 206
EarI CTCTTC 3 cut(s) 139, 197, 206
EciI GGCGGA 4 cut(s) 100, 127, 185, 194
Eco57I CTGAAG 2 cut(s) 201, 297
FaqI GGGAC 1 cut(s) 45
FokI GGATG 2 cut(s) 19, 362
FspBI CTAG 3 cut(s) 15, 164, 412
HaeIII GGCC 1 cut(s) 69
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 92, 230, 269
HpyCH4V TGCA 4 cut(s) 240, 278, 305, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 334
LpnPI CCDG 4 cut(s) 38, 267, 270, 345
LweI GCATC 1 cut(s) 287
MaeI CTAG 3 cut(s) 15, 164, 412
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 6 cut(s) 126, 184, 193, 269, 329, 370
MmeI TCCRAC 2 cut(s) 296, 413
MnlI CCTC 3 cut(s) 151, 209, 364
MspA1I CMGCKG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 204
NdeII GATC 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 2 cut(s) 170, 214
RsaNI GTAC 2 cut(s) 169, 213
Sau3AI GATC 1 cut(s) 334
ScaI AGTACT 2 cut(s) 170, 214
SetI ASST 4 cut(s) 223, 286, 347, 413
SfaNI GCATC 1 cut(s) 287
SfcI CTRYAG 1 cut(s) 178
SsiI CCGC 5 cut(s) 111, 138, 196, 205, 398
SspMI CTAG 3 cut(s) 15, 164, 412
TaaI ACNGT 3 cut(s) 92, 230, 269
TatI WGTACW 2 cut(s) 168, 212
XspI CTAG 3 cut(s) 15, 164, 412
ZrmI AGTACT 2 cut(s) 170, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.