Rh1CG404800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000150
Physical Location & Seq
Forward (+)
67040148 .. 67041195
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG404800.1

Sequence Viewer

Length: 474 bp
ATGATTTTATCTCATCTGATTCACCCAAATAATTCAAAACAAATTTCTTTAGAACGTCCCTATAGCCGGTCCAATCTTTCAATATGTTTTTGTCAAATATCATGGCCTTATCTCAAGCATGTCACTCCCAAGCATGCATTTTTCTTCGACACATCAAGCTTAGACTCAGAACTGCAGCAGACCGGTCTAAACAATGATTCTCTTGAGTATCAGTACATTTGTGTGACGACTTTTAGAATTGTCGGTCAAGGGCAAGATATGAACATCGAGACTGTTCGGTCATCCATTTTTCGCATAGCGATTGAAGGAAATCTCGAATTTGAAATCAAGTTCAGCTTCAAGCCTGATTATAAAGACATTGAACCGGAAGAAGAAGAGTATAGCGCAACTAATGCACTGCCTGAAAGTAAAAGTGTTGCATGGACTTCGAAGGTGGAGAAGACTTCTTTTCCTTTCCAACTGGTCCTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.15

Weight (kDa)

5.19

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AasI GACNNNNNNGTC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 42, 317
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 66
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 6 cut(s) 36, 81, 305, 323, 340, 362
AluBI AGCT 2 cut(s) 159, 336
AluI AGCT 2 cut(s) 159, 336
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 2 cut(s) 42, 317
AsiGI ACCGGT 1 cut(s) 182
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 69, 463
AsuHPI GGTGA 1 cut(s) 14
AsuII TTCGAA 1 cut(s) 428
AvaII GGWCC 2 cut(s) 69, 463
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 408, 442
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 472
BfmI CTRYAG 2 cut(s) 61, 173
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme18I GGWCC 2 cut(s) 69, 463
BmgT120I GGNCC 2 cut(s) 69, 463
BpiI GAAGAC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 428
BpuEI CTTGAG 2 cut(s) 98, 224
BsaWI WCCGGW 2 cut(s) 182, 364
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 2 cut(s) 66, 182
Bse1I ACTGG 1 cut(s) 465
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 182
BsiSI CCGG 3 cut(s) 67, 183, 365
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 428
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 428
BsrFI RCCGGY 2 cut(s) 66, 182
BsrI ACTGG 1 cut(s) 465
BssAI RCCGGY 2 cut(s) 66, 182
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 369
BstAPI GCANNNNNTGC 1 cut(s) 392
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 160, 166
BstF5I GGATG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 386
BstMAI GTCTC 1 cut(s) 263
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNSI RCATGY 2 cut(s) 122, 137
BstSFI CTRYAG 2 cut(s) 61, 173
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 446
BsuRI GGCC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 2 cut(s) 66, 182
Cfr13I GGNCC 2 cut(s) 69, 463
Csp6I GTAC 1 cut(s) 214
CspAI ACCGGT 1 cut(s) 182
CviAII CATG 4 cut(s) 102, 119, 134, 420
CviJI RGCY 5 cut(s) 66, 106, 159, 336, 343
CviKI_1 RGCY 5 cut(s) 66, 106, 159, 336, 343
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 160, 166
DrdI GACNNNNNNGTC 1 cut(s) 277
DseDI GACNNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 69, 463
EcoT22I ATGCAT 1 cut(s) 139
FaeI CATG 4 cut(s) 105, 122, 137, 423
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 42
FatI CATG 4 cut(s) 101, 118, 133, 419
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 472
GlaI GCGC 1 cut(s) 385
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 106
HapII CCGG 3 cut(s) 67, 183, 365
HhaI GCGC 1 cut(s) 386
Hin1II CATG 4 cut(s) 105, 122, 137, 423
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 3 cut(s) 19, 164, 197
HpaII CCGG 3 cut(s) 67, 183, 365
HphI GGTGA 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 18, 169
Hpy188III TCNNGA 3 cut(s) 203, 268, 314
HpyAV CCTTC 2 cut(s) 299, 424
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 137, 175, 395, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 2 cut(s) 160, 166
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 4 cut(s) 105, 122, 137, 423
HspAI GCGC 1 cut(s) 384
LpnPI CCDG 6 cut(s) 80, 196, 357, 378, 414, 446
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 1 cut(s) 472
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 121, 223
MboII GAAGA 5 cut(s) 136, 380, 383, 386, 451
MluCI AATT 4 cut(s) 31, 42, 237, 317
MlyI GAGTC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 139
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 3 cut(s) 67, 183, 365
MwoI GCNNNNNNNGC 1 cut(s) 392
NlaIII CATG 4 cut(s) 105, 122, 137, 423
NmuCI GTSAC 2 cut(s) 121, 223
NsiI ATGCAT 1 cut(s) 139
NspI RCATGY 2 cut(s) 122, 137
NspV TTCGAA 1 cut(s) 428
PaeI GCATGC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 19, 197
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PsiI TTATAA 1 cut(s) 351
PspPI GGNCC 2 cut(s) 69, 463
PstI CTGCAG 1 cut(s) 177
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 221
SatI GCNGC 1 cut(s) 176
Sau96I GGNCC 2 cut(s) 69, 463
SchI GAGTC 1 cut(s) 158
SetI ASST 4 cut(s) 58, 161, 338, 435
SfcI CTRYAG 2 cut(s) 61, 173
SfuI TTCGAA 1 cut(s) 428
SinI GGWCC 2 cut(s) 69, 463
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 113, 203
SmoI CTYRAG 2 cut(s) 113, 203
SphI GCATGC 1 cut(s) 137
Sse9I AATT 4 cut(s) 31, 42, 237, 317
SspMI CTAG 1 cut(s) 472
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 58
TaqI TCGA 4 cut(s) 147, 267, 315, 428
TaqII GACCGA 2 cut(s) 233, 267
TasI AATT 4 cut(s) 31, 42, 237, 317
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 2 cut(s) 19, 197
TscAI CASTG 1 cut(s) 402
TseFI GTSAC 2 cut(s) 121, 223
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 2 cut(s) 121, 223
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 1 cut(s) 402
VpaK11BI GGWCC 2 cut(s) 69, 463
XapI RAATTY 2 cut(s) 42, 317
XceI RCATGY 2 cut(s) 122, 137
XspI CTAG 1 cut(s) 472
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.