Rroxscaffold_3G00243990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000150
Physical Location & Seq
Forward (+)
36427657 .. 36428421
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243990.1

Sequence Viewer

Length: 540 bp
ATGTGGAAATTTTGTACCTTGGGTGCCAAGTTATATATTTTGCTAGATGGTGGTCCTGATTTGTTTGACATGGAAGTGTGTTTTCCCTCATGCAGTGGACATATTTTCGACATCAAGACTGGGAAATTGGTGTTATCAATCAAATCCCCAGCTACCAAATGGTTTGGAACTCATGTGTCTGCATATGGGAAAATTTACTCTCTTTCAAATCCATATTGCTCATCTGATGTACCAGAGCCATCGTTCGAGCAGCATGACCCTATCACTCAGTCTTGGCAGGAGCTGTGCTCTTTTCCATATTCATCAGAATATGGTAAAACAGAGATACAGAGCTATGCCGTTTGTGATGAAATCTTATTGTTTAGTATATGTGGCGGTAATGAAAACTATGGTGCACTATGGGCTTATGATGTTATAGACTGGAGAAGTGATCCTGATCATCATTTGGTTCATCTGGGTAACCTGGTCTTTTATCTTGTCCAGACTGGCTTCAACTCTTCAAATGAAGAGGCCAAGAAACCTTCAAATGTCTACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.16

Weight (kDa)

4.85

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 531
AciI CCGC 1 cut(s) 375
AclWI GGATC 1 cut(s) 425
AcsI RAATTY 2 cut(s) 8, 192
AfaI GTAC 2 cut(s) 16, 231
AgsI TTSAA 4 cut(s) 207, 493, 501, 525
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 3 cut(s) 152, 283, 333
AluI AGCT 3 cut(s) 152, 283, 333
Alw21I GWGCWC 2 cut(s) 290, 397
Alw44I GTGCAC 1 cut(s) 393
AlwI GGATC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 1 cut(s) 510
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 2 cut(s) 8, 192
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 290, 397
BbvI GCAGC 1 cut(s) 262
BccI CCATC 2 cut(s) 41, 247
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 464
BclI TGATCA 1 cut(s) 436
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 464
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 464
BmrI ACTGGG 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 129
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 3 cut(s) 124, 425, 490
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 435
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 3 cut(s) 124, 425, 490
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 512
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 290, 397
BsnI GGCC 1 cut(s) 512
Bsp1286I GDGCHC 2 cut(s) 290, 397
Bsp143I GATC 2 cut(s) 430, 436
BspACI CCGC 1 cut(s) 375
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 23
BsrI ACTGG 3 cut(s) 124, 425, 490
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 430, 436
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 464
Bst6I CTCTTC 2 cut(s) 501, 502
BstDEI CTNAG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 458
BstKTI GATC 2 cut(s) 433, 439
BstMBI GATC 2 cut(s) 430, 436
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 1 cut(s) 464
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 512
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
CaiI CAGNNNCTG 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 53
CsiI ACCWGGT 1 cut(s) 462
Csp6I GTAC 2 cut(s) 15, 230
CviAII CATG 4 cut(s) 70, 90, 173, 254
CviJI RGCY 7 cut(s) 152, 238, 283, 333, 404, 489, 512
CviKI_1 RGCY 7 cut(s) 152, 238, 283, 333, 404, 489, 512
CviQI GTAC 2 cut(s) 15, 230
DdeI CTNAG 1 cut(s) 267
DpnI GATC 2 cut(s) 432, 438
DpnII GATC 2 cut(s) 430, 436
Eam1104I CTCTTC 2 cut(s) 501, 502
EarI CTCTTC 2 cut(s) 501, 502
Eco130I CCWWGG 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 4 cut(s) 73, 93, 176, 257
FatI CATG 4 cut(s) 69, 89, 172, 253
FauNDI CATATG 1 cut(s) 184
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 251
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 1 cut(s) 512
Hin1II CATG 4 cut(s) 73, 93, 176, 257
Hpy166II GTNNAC 3 cut(s) 98, 395, 532
Hpy188I TCNGA 2 cut(s) 226, 307
Hpy188III TCNNGA 4 cut(s) 56, 115, 434, 481
Hpy8I GTNNAC 3 cut(s) 98, 395, 532
HpyAV CCTTC 1 cut(s) 531
HpyCH4V TGCA 3 cut(s) 93, 182, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 4 cut(s) 73, 93, 176, 257
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 2 cut(s) 430, 436
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 262
MabI ACCWGGT 1 cut(s) 462
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 432, 438
MboI GATC 2 cut(s) 430, 436
MboII GAAGA 2 cut(s) 489, 518
MhlI GDGCHC 2 cut(s) 290, 397
MluCI AATT 3 cut(s) 8, 125, 192
MnlI CCTC 2 cut(s) 97, 502
MseI TTAA 1 cut(s) 538
MslI CAYNNNNRTG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 464
MwoI GCNNNNNNNGC 1 cut(s) 401
NdeI CATATG 1 cut(s) 184
NdeII GATC 2 cut(s) 430, 436
NlaIII CATG 4 cut(s) 73, 93, 176, 257
NlaIV GGNNCC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 462
PspEI GGTNACC 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 283
RsaI GTAC 2 cut(s) 16, 231
RsaNI GTAC 2 cut(s) 15, 230
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 538
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 2 cut(s) 430, 436
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 2 cut(s) 290, 397
SetI ASST 6 cut(s) 20, 154, 285, 335, 465, 523
SexAI ACCWGGT 1 cut(s) 462
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 3 cut(s) 8, 125, 192
SsiI CCGC 1 cut(s) 375
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 2 cut(s) 108, 246
TasI AATT 3 cut(s) 8, 125, 192
Tru1I TTAA 1 cut(s) 538
Tru9I TTAA 1 cut(s) 538
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 5 cut(s) 291, 363, 396, 440, 519
TspRI CASTG 1 cut(s) 100
VneI GTGCAC 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 2 cut(s) 8, 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.