Prupe.5G196800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000150
Physical Location & Seq
Forward (+)
15936796 .. 15938262
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G196800.1

Sequence Viewer

Length: 861 bp
ACTCTTGTGTCTGCTTATGACAAGCTTTATTATGTTGCATCTCCAGCGTGCTCACCACCAATTAAGGAGCCCTCATTCGAGAGATATGATCCTGATGAAGACGTTTGGGAGCGAATGACTTCTTTTCCATTTTATCATGACTATGGGAGCCATACGAAAATAATTGGTTATGCCGTTTGTTATGGCGTTATTTTGTTTTCATTGTCGGACTCCTACTTGAATCCCTATGTCGTTGCTTTTCATGAGAGTAGAAATCAATGGAATCGAGTGACTTCTGCTTCTTATGCTTCTTTCAGAGGGAGAGCCGTGGCTGTAGGCGACACTATCTATGCGTTACATGCGCTTATGGAGGAGGTGATTATAGCATTCTCATTTAGGATGGACAAAGGTGAAGACGGTGGCATTACATATTCCCTAAACCCACAATTTATATTGCGTGGCCTGAAGATTGCTCGTCCACCAGTGCCATTTCGTGAGCTTAAGACAGGGTATTTGGTCCATTTGGGTAACAAAGACTTTTTTCATGTTAGGACTGGCAGTCCTGATGGCGAAGCATGTCCCATGGTTCAATATCTTAGTATCACCACGTTTCAAATTATTGTTGGAGAAGGAGGAAGACACATGATCAAGACCATACATTCAACTGTTTATCCTGTGGATATCAAGGGCCGTGAATGGTTTTCACTTGAGTTCTGCTTTACACCTGAGTGCGGGGATTACGAACCCATAGAAGAGGAAAGTGTGACTAGTATGAATCAGCCAAAACAAGAAGAAACCACTTTGGATGAACATGATAAGCAGTTTTTGATCCATGAGGGGACTCATCGTAAGCTTCTTGCTTACCCATGGCTAAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.8

Weight (kDa)

5.48

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 711
AclWI GGATC 2 cut(s) 83, 802
AcuI CTGAAG 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 710
AflII CTTAAG 1 cut(s) 479
AgsI TTSAA 4 cut(s) 220, 569, 593, 642
AhdI GACNNNNNGTC 1 cut(s) 537
AhlI ACTAGT 1 cut(s) 746
AleI CACNNNNGTG 1 cut(s) 706
AluBI AGCT 3 cut(s) 25, 478, 832
AluI AGCT 3 cut(s) 25, 478, 832
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 2 cut(s) 83, 802
AoxI GGCC 2 cut(s) 439, 667
ArsI GACNNNNNNTTYG 2 cut(s) 475, 507
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 496, 667
AsuHPI GGTGA 4 cut(s) 45, 367, 401, 574
AvaII GGWCC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 72
BbsI GAAGAC 3 cut(s) 105, 399, 622
Bbv12I GWGCWC 1 cut(s) 53
BccI CCATC 2 cut(s) 373, 539
BceAI ACGGC 3 cut(s) 158, 290, 654
BclI TGATCA 1 cut(s) 624
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 496
BmeRI GACNNNNNGTC 1 cut(s) 537
BmgT120I GGNCC 2 cut(s) 496, 667
BmiI GGNNCC 2 cut(s) 69, 149
BmsI GCATC 1 cut(s) 47
BpiI GAAGAC 3 cut(s) 105, 399, 622
BpmI CTGGAG 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 707
BsaJI CCNNGG 3 cut(s) 306, 561, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse1I ACTGG 2 cut(s) 461, 538
BseDI CCNNGG 3 cut(s) 306, 561, 845
BseGI GGATG 2 cut(s) 384, 790
BseLI CCNNNNNNNGG 1 cut(s) 710
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 2 cut(s) 461, 538
BseRI GAGGAG 1 cut(s) 365
BshFI GGCC 2 cut(s) 441, 669
BsiHKAI GWGCWC 1 cut(s) 53
BslFI GGGAC 2 cut(s) 543, 832
BslI CCNNNNNNNGG 1 cut(s) 710
BsmFI GGGAC 2 cut(s) 543, 832
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 2 cut(s) 441, 669
Bsp1286I GDGCHC 2 cut(s) 53, 72
Bsp143I GATC 3 cut(s) 88, 624, 807
Bsp19I CCATGG 2 cut(s) 561, 845
BspACI CCGC 1 cut(s) 711
BspANI GGCC 2 cut(s) 441, 669
BspCNI CTCAG 1 cut(s) 697
BspHI TCATGA 2 cut(s) 136, 241
BspLI GGNNCC 2 cut(s) 69, 149
BspPI GGATC 2 cut(s) 83, 802
BspTI CTTAAG 1 cut(s) 479
BsrI ACTGG 2 cut(s) 461, 538
BssECI CCNNGG 3 cut(s) 306, 561, 845
BssMI GATC 3 cut(s) 88, 624, 807
BssT1I CCWWGG 2 cut(s) 561, 845
Bst4CI ACNGT 2 cut(s) 398, 646
Bst6I CTCTTC 1 cut(s) 726
BstAFI CTTAAG 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 575, 705, 851
BstDSI CCRYGG 3 cut(s) 306, 561, 845
BstF5I GGATG 2 cut(s) 384, 790
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 3 cut(s) 91, 627, 810
BstMBI GATC 3 cut(s) 88, 624, 807
BstMWI GCNNNNNNNGC 3 cut(s) 44, 284, 338
BstNSI RCATGY 2 cut(s) 341, 558
BstSFI CTRYAG 1 cut(s) 312
BstV2I GAAGAC 3 cut(s) 105, 399, 622
BsuRI GGCC 2 cut(s) 441, 669
BtgI CCRYGG 3 cut(s) 306, 561, 845
BtsCI GGATG 2 cut(s) 384, 790
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 49
CciI TCATGA 2 cut(s) 136, 241
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 496, 667
DdeI CTNAG 3 cut(s) 575, 705, 851
DpnI GATC 3 cut(s) 90, 626, 809
DpnII GATC 3 cut(s) 88, 624, 807
DriI GACNNNNNGTC 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 726
Eam1105I GACNNNNNGTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 726
Eco130I CCWWGG 2 cut(s) 561, 845
Eco24I GRGCYC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 464
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 2 cut(s) 561, 845
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 561, 845
FaqI GGGAC 2 cut(s) 543, 832
FauI CCCGC 1 cut(s) 704
FbaI TGATCA 1 cut(s) 624
FokI GGATG 2 cut(s) 391, 797
FriOI GRGCYC 1 cut(s) 72
FspBI CTAG 1 cut(s) 747
GlaI GCGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 441, 669
HhaI GCGC 1 cut(s) 343
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 2 cut(s) 23, 830
HinfI GANTC 5 cut(s) 209, 220, 262, 754, 820
HphI GGTGA 4 cut(s) 45, 367, 401, 574
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 2 cut(s) 208, 296
Hpy188III TCNNGA 7 cut(s) 79, 92, 137, 242, 473, 542, 628
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 602
HpyCH4III ACNGT 2 cut(s) 398, 646
HpyCH4IV ACGT 2 cut(s) 102, 587
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 284, 338
HpyF3I CTNAG 3 cut(s) 575, 705, 851
HpySE526I ACGT 2 cut(s) 102, 587
HspAI GCGC 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 624
Kzo9I GATC 3 cut(s) 88, 624, 807
LmnI GCTCC 3 cut(s) 67, 109, 147
LpnPI CCDG 9 cut(s) 57, 105, 455, 471, 474, 519, 555, 666, 717
LweI GCATC 1 cut(s) 47
MaeI CTAG 1 cut(s) 747
MaeII ACGT 2 cut(s) 102, 587
MaeIII GTNAC 4 cut(s) 268, 333, 506, 742
MalI GATC 3 cut(s) 90, 626, 809
MboI GATC 3 cut(s) 88, 624, 807
MboII GAAGA 6 cut(s) 110, 404, 457, 627, 743, 782
MhlI GDGCHC 2 cut(s) 53, 72
MluCI AATT 4 cut(s) 60, 162, 425, 594
MlyI GAGTC 2 cut(s) 203, 814
MmeI TCCRAC 2 cut(s) 186, 583
MnlI CCTC 7 cut(s) 82, 290, 343, 346, 605, 727, 808
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 2 cut(s) 63, 480
MslI CAYNNNNRTG 2 cut(s) 141, 706
MspCI CTTAAG 1 cut(s) 479
Mva1269I GAATGC 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 44, 284, 338
NcoI CCATGG 2 cut(s) 561, 845
NdeII GATC 3 cut(s) 88, 624, 807
NlaIV GGNNCC 2 cut(s) 69, 149
NmuCI GTSAC 2 cut(s) 268, 742
NspI RCATGY 2 cut(s) 341, 558
OliI CACNNNNGTG 1 cut(s) 706
PagI TCATGA 2 cut(s) 136, 241
PctI GAATGC 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 3 cut(s) 220, 262, 754
PleI GAGTC 2 cut(s) 203, 814
PpsI GAGTC 2 cut(s) 203, 814
PspN4I GGNNCC 2 cut(s) 69, 149
PspPI GGNCC 2 cut(s) 496, 667
RseI CAYNNNNRTG 2 cut(s) 141, 706
SaqAI TTAA 2 cut(s) 63, 480
Sau3AI GATC 3 cut(s) 88, 624, 807
Sau96I GGNCC 2 cut(s) 496, 667
SchI GAGTC 2 cut(s) 203, 814
SduI GDGCHC 2 cut(s) 53, 72
SetI ASST 8 cut(s) 27, 105, 357, 391, 480, 590, 706, 834
SfaNI GCATC 1 cut(s) 47
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 2 cut(s) 141, 706
SmlI CTYRAG 2 cut(s) 479, 686
SmoI CTYRAG 2 cut(s) 479, 686
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 4 cut(s) 60, 162, 425, 594
SsiI CCGC 1 cut(s) 711
SspMI CTAG 1 cut(s) 747
StyI CCWWGG 2 cut(s) 561, 845
TaaI ACNGT 2 cut(s) 398, 646
TaiI ACGT 2 cut(s) 105, 590
TaqI TCGA 2 cut(s) 78, 265
TasI AATT 4 cut(s) 60, 162, 425, 594
TfiI GAWTC 3 cut(s) 220, 262, 754
Tru1I TTAA 2 cut(s) 63, 480
Tru9I TTAA 2 cut(s) 63, 480
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 2 cut(s) 268, 742
Tsp45I GTSAC 2 cut(s) 268, 742
TspDTI ATGAA 6 cut(s) 111, 189, 230, 512, 767, 801
TspRI CASTG 1 cut(s) 468
Vha464I CTTAAG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 496
XceI RCATGY 2 cut(s) 341, 558
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.