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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 947 |
| AarI | CACCTGC | 1 cut(s) | 74 |
| Acc36I | ACCTGC | 1 cut(s) | 74 |
| AccB1I | GGYRCC | 1 cut(s) | 62 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 230, 1026 |
| AccII | CGCG | 1 cut(s) | 575 |
| AclWI | GGATC | 2 cut(s) | 383, 978 |
| AcsI | RAATTY | 3 cut(s) | 188, 372, 911 |
| AcuI | CTGAAG | 1 cut(s) | 32 |
| AcvI | CACGTG | 1 cut(s) | 404 |
| AcyI | GRCGYC | 1 cut(s) | 610 |
| AfaI | GTAC | 4 cut(s) | 17, 135, 196, 1164 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 59, 230, 1026 |
| AgsI | TTSAA | 5 cut(s) | 140, 289, 762, 954, 1001 |
| AjnI | CCWGG | 1 cut(s) | 840 |
| AleI | CACNNNNGTG | 1 cut(s) | 254 |
| AluBI | AGCT | 7 cut(s) | 30, 332, 463, 756, 1026, 1210, 1241 |
| AluI | AGCT | 7 cut(s) | 30, 332, 463, 756, 1026, 1210, 1241 |
| Alw26I | GTCTC | 1 cut(s) | 290 |
| AlwI | GGATC | 2 cut(s) | 383, 978 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 463, 1026 |
| AoxI | GGCC | 2 cut(s) | 654, 986 |
| ApeKI | GCWGC | 3 cut(s) | 636, 1023, 1210 |
| ApoI | RAATTY | 3 cut(s) | 188, 372, 911 |
| AspLEI | GCGC | 2 cut(s) | 575, 577 |
| AspS9I | GGNCC | 3 cut(s) | 233, 654, 986 |
| AsuHPI | GGTGA | 4 cut(s) | 58, 318, 322, 898 |
| AvaII | GGWCC | 1 cut(s) | 233 |
| BaeGI | GKGCMC | 1 cut(s) | 65 |
| BanI | GGYRCC | 1 cut(s) | 62 |
| BbrPI | CACGTG | 1 cut(s) | 404 |
| BbvI | GCAGC | 3 cut(s) | 623, 1035, 1197 |
| BccI | CCATC | 1 cut(s) | 221 |
| BceAI | ACGGC | 3 cut(s) | 403, 503, 641 |
| BciT130I | CCWGG | 1 cut(s) | 842 |
| BclI | TGATCA | 1 cut(s) | 814 |
| BcoDI | GTCTC | 1 cut(s) | 290 |
| BfaI | CTAG | 1 cut(s) | 300 |
| BfuAI | ACCTGC | 1 cut(s) | 74 |
| BisI | GCNGC | 3 cut(s) | 637, 1024, 1211 |
| BlsI | GCNGC | 3 cut(s) | 638, 1025, 1212 |
| BmcAI | AGTACT | 1 cut(s) | 135 |
| Bme1390I | CCNGG | 1 cut(s) | 842 |
| Bme18I | GGWCC | 1 cut(s) | 233 |
| BmgT120I | GGNCC | 3 cut(s) | 233, 654, 986 |
| BmiI | GGNNCC | 3 cut(s) | 64, 987, 1031 |
| BmrFI | CCNGG | 1 cut(s) | 842 |
| BpmI | CTGGAG | 2 cut(s) | 826, 1071 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1206 |
| BsaAI | YACGTR | 1 cut(s) | 404 |
| BsaHI | GRCGYC | 1 cut(s) | 610 |
| BsaJI | CCNNGG | 3 cut(s) | 198, 657, 699 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 59, 230, 1026 |
| Bse1I | ACTGG | 3 cut(s) | 131, 614, 1226 |
| BseBI | CCWGG | 1 cut(s) | 842 |
| BseDI | CCNNGG | 3 cut(s) | 198, 657, 699 |
| BseGI | GGATG | 1 cut(s) | 1069 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 59, 230, 1026 |
| BseMII | CTCAG | 2 cut(s) | 461, 1197 |
| BseNI | ACTGG | 3 cut(s) | 131, 614, 1226 |
| BsePI | GCGCGC | 1 cut(s) | 573 |
| BseSI | GKGCMC | 1 cut(s) | 65 |
| BseXI | GCAGC | 3 cut(s) | 623, 1035, 1197 |
| Bsh1236I | CGCG | 1 cut(s) | 575 |
| BshFI | GGCC | 2 cut(s) | 656, 988 |
| BshNI | GGYRCC | 1 cut(s) | 62 |
| BslFI | GGGAC | 1 cut(s) | 1052 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 59, 230, 1026 |
| BsmAI | GTCTC | 1 cut(s) | 290 |
| BsmFI | GGGAC | 1 cut(s) | 1052 |
| BsmI | GAATGC | 2 cut(s) | 713, 1087 |
| BsnI | GGCC | 2 cut(s) | 656, 988 |
| Bsp1286I | GDGCHC | 1 cut(s) | 65 |
| Bsp143I | GATC | 4 cut(s) | 388, 406, 814, 970 |
| Bsp19I | CCATGG | 1 cut(s) | 699 |
| BspANI | GGCC | 2 cut(s) | 656, 988 |
| BspCNI | CTCAG | 2 cut(s) | 460, 1198 |
| BspFNI | CGCG | 1 cut(s) | 575 |
| BspLI | GGNNCC | 3 cut(s) | 64, 987, 1031 |
| BspMI | ACCTGC | 1 cut(s) | 74 |
| BspPI | GGATC | 2 cut(s) | 383, 978 |
| BspT107I | GGYRCC | 1 cut(s) | 62 |
| BsrI | ACTGG | 3 cut(s) | 131, 614, 1226 |
| BssECI | CCNNGG | 3 cut(s) | 198, 657, 699 |
| BssHII | GCGCGC | 1 cut(s) | 573 |
| BssMI | GATC | 4 cut(s) | 388, 406, 814, 970 |
| BssNI | GRCGYC | 1 cut(s) | 610 |
| BssT1I | CCWWGG | 2 cut(s) | 198, 699 |
| Bst2UI | CCWGG | 1 cut(s) | 842 |
| Bst4CI | ACNGT | 4 cut(s) | 145, 780, 1015, 1042 |
| BstACI | GRCGYC | 1 cut(s) | 610 |
| BstBAI | YACGTR | 1 cut(s) | 404 |
| BstC8I | GCNNGC | 1 cut(s) | 575 |
| BstDEI | CTNAG | 3 cut(s) | 447, 1206, 1254 |
| BstDSI | CCRYGG | 2 cut(s) | 657, 699 |
| BstEII | GGTNACC | 1 cut(s) | 836 |
| BstF5I | GGATG | 1 cut(s) | 1069 |
| BstFNI | CGCG | 1 cut(s) | 575 |
| BstHHI | GCGC | 2 cut(s) | 575, 577 |
| BstKTI | GATC | 4 cut(s) | 391, 409, 817, 973 |
| BstMAI | GTCTC | 1 cut(s) | 290 |
| BstMBI | GATC | 4 cut(s) | 388, 406, 814, 970 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 524, 581, 1091 |
| BstNI | CCWGG | 1 cut(s) | 842 |
| BstPI | GGTNACC | 1 cut(s) | 836 |
| BstSCI | CCNGG | 1 cut(s) | 840 |
| BstSLI | GKGCMC | 1 cut(s) | 65 |
| BstUI | CGCG | 1 cut(s) | 575 |
| BstV1I | GCAGC | 3 cut(s) | 623, 1035, 1197 |
| BstX2I | RGATCY | 2 cut(s) | 388, 970 |
| BstYI | RGATCY | 2 cut(s) | 388, 970 |
| BsuRI | GGCC | 2 cut(s) | 656, 988 |
| BtgI | CCRYGG | 2 cut(s) | 657, 699 |
| BtsCI | GGATG | 1 cut(s) | 1069 |
| BtsI | GCAGTG | 1 cut(s) | 280 |
| BtsIMutI | CAGTG | 1 cut(s) | 280 |
| BveI | ACCTGC | 1 cut(s) | 74 |
| Cac8I | GCNNGC | 1 cut(s) | 575 |
| CaiI | CAGNNNCTG | 2 cut(s) | 463, 1026 |
| CfoI | GCGC | 2 cut(s) | 575, 577 |
| Cfr13I | GGNCC | 3 cut(s) | 233, 654, 986 |
| CseI | GACGC | 2 cut(s) | 599, 1110 |
| CsiI | ACCWGGT | 1 cut(s) | 840 |
| Csp6I | GTAC | 4 cut(s) | 16, 134, 195, 1163 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 256, 291 |
| CviAII | CATG | 4 cut(s) | 208, 353, 700, 1005 |
| CviQI | GTAC | 4 cut(s) | 16, 134, 195, 1163 |
| DdeI | CTNAG | 3 cut(s) | 447, 1206, 1254 |
| DpnI | GATC | 4 cut(s) | 390, 408, 816, 972 |
| DpnII | GATC | 4 cut(s) | 388, 406, 814, 970 |
| Eco130I | CCWWGG | 2 cut(s) | 198, 699 |
| Eco47I | GGWCC | 1 cut(s) | 233 |
| Eco57I | CTGAAG | 1 cut(s) | 32 |
| Eco72I | CACGTG | 1 cut(s) | 404 |
| Eco91I | GGTNACC | 1 cut(s) | 836 |
| EcoO65I | GGTNACC | 1 cut(s) | 836 |
| EcoRII | CCWGG | 1 cut(s) | 840 |
| EcoT14I | CCWWGG | 2 cut(s) | 198, 699 |
| ErhI | CCWWGG | 2 cut(s) | 198, 699 |
| FaeI | CATG | 4 cut(s) | 211, 356, 703, 1008 |
| FaqI | GGGAC | 1 cut(s) | 1052 |
| FatI | CATG | 4 cut(s) | 207, 352, 699, 1004 |
| FauNDI | CATATG | 1 cut(s) | 364 |
| FbaI | TGATCA | 1 cut(s) | 814 |
| Fnu4HI | GCNGC | 3 cut(s) | 637, 1024, 1211 |
| FokI | GGATG | 1 cut(s) | 1076 |
| Fsp4HI | GCNGC | 3 cut(s) | 637, 1024, 1211 |
| FspBI | CTAG | 1 cut(s) | 300 |
| GlaI | GCGC | 2 cut(s) | 574, 576 |
| GluI | GCNGC | 3 cut(s) | 637, 1024, 1211 |
| GsuI | CTGGAG | 2 cut(s) | 826, 1071 |
| HaeIII | GGCC | 2 cut(s) | 656, 988 |
| HgaI | GACGC | 2 cut(s) | 599, 1110 |
| HhaI | GCGC | 2 cut(s) | 575, 577 |
| Hin1I | GRCGYC | 1 cut(s) | 610 |
| Hin1II | CATG | 4 cut(s) | 211, 356, 703, 1008 |
| Hin6I | GCGC | 2 cut(s) | 573, 575 |
| HinP1I | GCGC | 2 cut(s) | 573, 575 |
| HincII | GTYRAC | 2 cut(s) | 625, 893 |
| HindII | GTYRAC | 2 cut(s) | 625, 893 |
| HinfI | GANTC | 3 cut(s) | 49, 203, 1245 |
| HphI | GGTGA | 4 cut(s) | 58, 318, 322, 898 |
| Hpy166II | GTNNAC | 3 cut(s) | 278, 625, 893 |
| Hpy188I | TCNGA | 4 cut(s) | 388, 484, 667, 918 |
| Hpy188III | TCNNGA | 4 cut(s) | 236, 295, 859, 1205 |
| Hpy8I | GTNNAC | 3 cut(s) | 278, 625, 893 |
| Hpy99I | CGWCG | 3 cut(s) | 875, 878, 1126 |
| HpyAV | CCTTC | 5 cut(s) | 98, 645, 737, 924, 1120 |
| HpyCH4III | ACNGT | 4 cut(s) | 145, 780, 1015, 1042 |
| HpyCH4IV | ACGT | 1 cut(s) | 403 |
| HpyCH4V | TGCA | 3 cut(s) | 77, 273, 362 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 524, 581, 1091 |
| HpyF3I | CTNAG | 3 cut(s) | 447, 1206, 1254 |
| HpySE526I | ACGT | 1 cut(s) | 403 |
| Hsp92I | GRCGYC | 1 cut(s) | 610 |
| Hsp92II | CATG | 4 cut(s) | 211, 356, 703, 1008 |
| HspAI | GCGC | 2 cut(s) | 573, 575 |
| Ksp22I | TGATCA | 1 cut(s) | 814 |
| Kzo9I | GATC | 4 cut(s) | 388, 406, 814, 970 |
| LmnI | GCTCC | 2 cut(s) | 337, 460 |
| Lsp1109I | GCAGC | 3 cut(s) | 623, 1035, 1197 |
| MabI | ACCWGGT | 1 cut(s) | 840 |
| MaeI | CTAG | 1 cut(s) | 300 |
| MaeII | ACGT | 1 cut(s) | 403 |
| MaeIII | GTNAC | 6 cut(s) | 46, 310, 774, 836, 1096, 1132 |
| MalI | GATC | 4 cut(s) | 390, 408, 816, 972 |
| MboI | GATC | 4 cut(s) | 388, 406, 814, 970 |
| MboII | GAAGA | 8 cut(s) | 16, 110, 113, 752, 1085, 1121, 1157, 1160 |
| MflI | RGATCY | 2 cut(s) | 388, 970 |
| MhlI | GDGCHC | 1 cut(s) | 65 |
| MluCI | AATT | 8 cut(s) | 92, 152, 188, 372, 594, 911, 1199, 1221 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 8 cut(s) | 52, 409, 641, 920, 958, 1054, 1084, 1123 |
| MseI | TTAA | 1 cut(s) | 597 |
| MslI | CAYNNNNRTG | 1 cut(s) | 254 |
| MspA1I | CMGCKG | 1 cut(s) | 1026 |
| MspR9I | CCNGG | 1 cut(s) | 842 |
| Mva1269I | GAATGC | 2 cut(s) | 713, 1087 |
| MvaI | CCWGG | 1 cut(s) | 842 |
| MvnI | CGCG | 1 cut(s) | 575 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 524, 581, 1091 |
| NcoI | CCATGG | 1 cut(s) | 699 |
| NdeI | CATATG | 1 cut(s) | 364 |
| NdeII | GATC | 4 cut(s) | 388, 406, 814, 970 |
| NlaIII | CATG | 4 cut(s) | 211, 356, 703, 1008 |
| NlaIV | GGNNCC | 3 cut(s) | 64, 987, 1031 |
| NmuCI | GTSAC | 4 cut(s) | 46, 310, 1096, 1132 |
| OliI | CACNNNNGTG | 1 cut(s) | 254 |
| PaqCI | CACCTGC | 1 cut(s) | 74 |
| PauI | GCGCGC | 1 cut(s) | 573 |
| PctI | GAATGC | 2 cut(s) | 713, 1087 |
| PfeI | GAWTC | 2 cut(s) | 203, 1245 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 230, 1026 |
| PkrI | GCNGC | 3 cut(s) | 638, 1025, 1212 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PmaCI | CACGTG | 1 cut(s) | 404 |
| PmlI | CACGTG | 1 cut(s) | 404 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Ppu21I | YACGTR | 1 cut(s) | 404 |
| PsiI | TTATAA | 1 cut(s) | 947 |
| Psp6I | CCWGG | 1 cut(s) | 840 |
| PspCI | CACGTG | 1 cut(s) | 404 |
| PspEI | GGTNACC | 1 cut(s) | 836 |
| PspGI | CCWGG | 1 cut(s) | 840 |
| PspN4I | GGNNCC | 3 cut(s) | 64, 987, 1031 |
| PspPI | GGNCC | 3 cut(s) | 233, 654, 986 |
| PstNI | CAGNNNCTG | 2 cut(s) | 463, 1026 |
| PsuI | RGATCY | 2 cut(s) | 388, 970 |
| PteI | GCGCGC | 1 cut(s) | 573 |
| PvuII | CAGCTG | 1 cut(s) | 1026 |
| RsaI | GTAC | 4 cut(s) | 17, 135, 196, 1164 |
| RsaNI | GTAC | 4 cut(s) | 16, 134, 195, 1163 |
| RseI | CAYNNNNRTG | 1 cut(s) | 254 |
| SaqAI | TTAA | 1 cut(s) | 597 |
| SatI | GCNGC | 3 cut(s) | 637, 1024, 1211 |
| Sau3AI | GATC | 4 cut(s) | 388, 406, 814, 970 |
| Sau96I | GGNCC | 3 cut(s) | 233, 654, 986 |
| ScaI | AGTACT | 1 cut(s) | 135 |
| SchI | GAGTC | 1 cut(s) | 43 |
| ScrFI | CCNGG | 1 cut(s) | 842 |
| SduI | GDGCHC | 1 cut(s) | 65 |
| SexAI | ACCWGGT | 1 cut(s) | 840 |
| SinI | GGWCC | 1 cut(s) | 233 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 254 |
| Sse9I | AATT | 8 cut(s) | 92, 152, 188, 372, 594, 911, 1199, 1221 |
| SspMI | CTAG | 1 cut(s) | 300 |
| StyD4I | CCNGG | 1 cut(s) | 840 |
| StyI | CCWWGG | 2 cut(s) | 198, 699 |
| TaaI | ACNGT | 4 cut(s) | 145, 780, 1015, 1042 |
| TaiI | ACGT | 1 cut(s) | 406 |
| TaqI | TCGA | 8 cut(s) | 294, 426, 646, 783, 870, 993, 1124, 1248 |
| TasI | AATT | 8 cut(s) | 92, 152, 188, 372, 594, 911, 1199, 1221 |
| TatI | WGTACW | 1 cut(s) | 133 |
| TfiI | GAWTC | 2 cut(s) | 203, 1245 |
| Tru1I | TTAA | 1 cut(s) | 597 |
| Tru9I | TTAA | 1 cut(s) | 597 |
| TscAI | CASTG | 1 cut(s) | 280 |
| TseFI | GTSAC | 4 cut(s) | 46, 310, 1096, 1132 |
| TseI | GCWGC | 3 cut(s) | 636, 1023, 1210 |
| Tsp45I | GTSAC | 4 cut(s) | 46, 310, 1096, 1132 |
| TspDTI | ATGAA | 4 cut(s) | 17, 501, 753, 818 |
| TspGWI | ACGGA | 1 cut(s) | 266 |
| TspRI | CASTG | 1 cut(s) | 280 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 230, 1026 |
| VpaK11BI | GGWCC | 1 cut(s) | 233 |
| XapI | RAATTY | 3 cut(s) | 188, 372, 911 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 336, 697, 706 |
| XspI | CTAG | 1 cut(s) | 300 |
| ZrmI | AGTACT | 1 cut(s) | 135 |