Rmu_ssc0000119.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000119.1
OG0000150
Physical Location & Seq
Forward (+)
49724 .. 50838
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000119.1_g000014.1.cds

Sequence Viewer

Length: 822 bp
atgccaaagccatcctttcagcgatatgatcccatcaccgactcttgggaggcactccctccttttccattatattctgagaaaaatgcagacatggagatagttggttatgctgttggttatggctgtatattggttatagcattctctcgtacgatgggctcaaagtccaatggtagtacgagctattatctagagaaaccatcgttgttgccaggcctgaagagtgaggttaagggggacagtaccgtctttcagcaagcggagtatttggttcatttggggaacttgaaattttgtcttgcccaaactatcatggatgacttgactacagggcgtcaacctctatggatcaccacattccaggttatcaatgaagaaggaggaggaaggtatatcaagacattacattcaactgttcgtgatgtgaacataaagtgttttggtaagggttttggtagattcacggttgattttagcttcatagttggggaggattttgaagttttgaaccaaaagaaagagggagtacgtgttgatatgatggaggagcagccgaaagaagaaactgcgctgatttctgatgaaatgatggaggacagaggtgtttcagtaaatgaagaagaaacaaattcccaatgcgattcagaaaatgaagaagaaacaaaatgtgaaggtgagtcagaaaatgaagaaacaaaatgcgaaggtgattcagaaaatgaagaaagagaagacaaggttaacttatcatcctgtatcttaaaagtagggtttttgaagcactctgaccttgaattggatgtttgtttatattggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.89

Weight (kDa)

4.46

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AciI CCGC 1 cut(s) 263
AclWI GGATC 2 cut(s) 23, 359
AcsI RAATTY 2 cut(s) 293, 631
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 4 cut(s) 154, 181, 247, 531
AfiI CCNNNNNNNGG 2 cut(s) 45, 799
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 6 cut(s) 292, 414, 503, 511, 781, 797
AjnI CCWGG 2 cut(s) 214, 363
AluBI AGCT 2 cut(s) 186, 480
AluI AGCT 2 cut(s) 186, 480
AlwI GGATC 2 cut(s) 23, 359
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 553
ApoI RAATTY 2 cut(s) 293, 631
AspLEI GCGC 1 cut(s) 574
AsuHPI GGTGA 4 cut(s) 28, 346, 689, 722
BanII GRGCYC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 741
BbvI GCAGC 1 cut(s) 565
BccI CCATC 6 cut(s) 19, 41, 151, 211, 538, 586
BciT130I CCWGG 2 cut(s) 216, 365
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 1 cut(s) 554
BlsI GCNGC 1 cut(s) 555
Bme1390I CCNGG 2 cut(s) 216, 365
BmrFI CCNGG 2 cut(s) 216, 365
BpiI GAAGAC 1 cut(s) 741
BsaAI YACGTR 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 799
BseBI CCWGG 2 cut(s) 216, 365
BseGI GGATG 4 cut(s) 11, 325, 752, 808
BseLI CCNNNNNNNGG 2 cut(s) 45, 799
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 2 cut(s) 399, 563
BseXI GCAGC 1 cut(s) 565
BshFI GGCC 1 cut(s) 219
BsiWI CGTACG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 45, 799
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 28, 351
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 70
BspPI GGATC 2 cut(s) 23, 359
BssMI GATC 2 cut(s) 28, 351
BssNI GRCGYC 1 cut(s) 337
Bst2UI CCWGG 2 cut(s) 216, 365
Bst4CI ACNGT 4 cut(s) 245, 250, 418, 469
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 337
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 4 cut(s) 11, 325, 752, 808
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 2 cut(s) 31, 354
BstMBI GATC 2 cut(s) 28, 351
BstNI CCWGG 2 cut(s) 216, 365
BstSCI CCNGG 2 cut(s) 214, 363
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 741
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 4 cut(s) 11, 325, 752, 808
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 1 cut(s) 574
CseI GACGC 1 cut(s) 326
Csp6I GTAC 4 cut(s) 153, 180, 246, 530
CviAII CATG 2 cut(s) 94, 316
CviJI RGCY 7 cut(s) 10, 126, 162, 186, 219, 480, 556
CviKI_1 RGCY 7 cut(s) 10, 126, 162, 186, 219, 480, 556
CviQI GTAC 4 cut(s) 153, 180, 246, 530
DdeI CTNAG 1 cut(s) 78
DpnI GATC 2 cut(s) 30, 353
DpnII GATC 2 cut(s) 28, 351
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco147I AGGCCT 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 214, 363
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 2 cut(s) 97, 319
FalI AAGNNNNNCTT 3 cut(s) 31, 731, 763
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 93, 315
Fnu4HI GCNGC 1 cut(s) 554
FokI GGATG 3 cut(s) 332, 739, 815
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 554
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 573
GluI GCNGC 1 cut(s) 554
HaeIII GGCC 1 cut(s) 219
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 574
Hin1I GRCGYC 1 cut(s) 337
Hin1II CATG 2 cut(s) 97, 319
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HincII GTYRAC 2 cut(s) 341, 745
HindII GTYRAC 2 cut(s) 341, 745
HinfI GANTC 5 cut(s) 41, 462, 644, 680, 713
HpaI GTTAAC 1 cut(s) 745
HphI GGTGA 4 cut(s) 28, 346, 689, 722
Hpy166II GTNNAC 3 cut(s) 341, 430, 745
Hpy188I TCNGA 6 cut(s) 79, 583, 649, 685, 718, 790
Hpy188III TCNNGA 3 cut(s) 194, 400, 422
Hpy8I GTNNAC 3 cut(s) 341, 430, 745
HpyAV CCTTC 4 cut(s) 374, 384, 668, 701
HpyCH4III ACNGT 4 cut(s) 245, 250, 418, 469
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 532
Hsp92I GRCGYC 1 cut(s) 337
Hsp92II CATG 2 cut(s) 97, 319
HspAI GCGC 1 cut(s) 572
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 2 cut(s) 28, 351
LmnI GCTCC 1 cut(s) 550
LpnPI CCDG 7 cut(s) 201, 228, 233, 318, 350, 377, 769
Lsp1109I GCAGC 1 cut(s) 565
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 532
MalI GATC 2 cut(s) 30, 353
MboI GATC 2 cut(s) 28, 351
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 3 cut(s) 293, 631, 797
MlyI GAGTC 2 cut(s) 35, 689
MseI TTAA 3 cut(s) 234, 744, 764
MspR9I CCNGG 2 cut(s) 216, 365
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 2 cut(s) 216, 365
NdeII GATC 2 cut(s) 28, 351
NlaIII CATG 2 cut(s) 97, 319
PceI AGGCCT 1 cut(s) 219
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 3 cut(s) 462, 644, 713
Pfl23II CGTACG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 555
PleI GAGTC 2 cut(s) 35, 688
PpsI GAGTC 2 cut(s) 35, 688
Ppu21I YACGTR 1 cut(s) 533
Psp6I CCWGG 2 cut(s) 214, 363
PspGI CCWGG 2 cut(s) 214, 363
PspLI CGTACG 1 cut(s) 152
RsaI GTAC 4 cut(s) 154, 181, 247, 531
RsaNI GTAC 4 cut(s) 153, 180, 246, 530
SaqAI TTAA 3 cut(s) 234, 744, 764
SatI GCNGC 1 cut(s) 554
Sau3AI GATC 2 cut(s) 28, 351
SchI GAGTC 2 cut(s) 35, 689
ScrFI CCNGG 2 cut(s) 216, 365
SduI GDGCHC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 330
Sse9I AATT 3 cut(s) 293, 631, 797
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 194
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 214, 363
TaaI ACNGT 4 cut(s) 245, 250, 418, 469
TaiI ACGT 1 cut(s) 535
TasI AATT 3 cut(s) 293, 631, 797
TfiI GAWTC 3 cut(s) 462, 644, 713
Tru1I TTAA 3 cut(s) 234, 744, 764
Tru9I TTAA 3 cut(s) 234, 744, 764
TseI GCWGC 1 cut(s) 553
TspDTI ATGAA 8 cut(s) 266, 390, 472, 600, 633, 669, 705, 738
XapI RAATTY 2 cut(s) 293, 631
XbaI TCTAGA 1 cut(s) 193
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.