Rmu_sc0000556.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000556.1
OG0000150
Physical Location & Seq
Forward (+)
10267 .. 17544
7278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000556.1_g000004.1.cds

Sequence Viewer

Length: 2349 bp
atgagtatgcctactgctagtaacggtgatgtgcctagtgcttgtgatgtgcctaatactaatggcagtaaggtgcctagtatggtgcctaacaggcctagtgtacttggtaatggtgtgcctagcgaggctaatgagtccaatatcaacgtcagaagatcaaggcagtcattggggagtccatcaatcaaagatgaccagatcattgagctcgtctccaactggtgtcgcactgccgtcaaggagacaaggactcgaggactcgagggctcgaacctgccaattcctggtacaagaggcgacatggccggagatgacgttttgccgcctcaaatccacatgaagggaggggagaagaagaagaagaagaagaagcagaagaagaagaagggaacaacgggcgacatgagccgtccccgtcccgattgtcatgatatgtcaccgccttgtgaagtctgtcaccagcgatttcccgacaacatcaccctccaaatacatagggagaatgtccatgtgcttcatatttgtgagatatgtggattatcgttttactctgatactctcctccaaacacataagcagtgtgtgcatacgcttcatacgtgtgagatatgtggagtatcgtttcgctctgatgctcaactccagagtcataggaaatccaaacatccggatttaaagaagaaaaagatgatgaagaagaagaagaagaagaagaggcagaagaagaagaagaagaatgaggaggaggaggaggaggagaaggcgaaggcggagggggagcatgccagcagcttccccattgagaagacgatgaacaaggcaccctcaccctcgatttctggcgagagctttcccatggagaaggtggaccaggcagaatctatacttattatggtgaagtttgacatggatgattcattttctggcgcaatatacgaaatcaaacttgaccaacttcagccacttgagcatggtaaatctgtgggcggatttaacactgacccttcaactctaccaatgctcaaacctgtagcagagttatttggtaagggctggaagacggaggagctctttttatttgattgtgctagaattggcagcctctccaagttatatgttttggtaaatcaaatcccatgcccttatctgaagcctgtcactcccgagtatgcatttgccttcaacagaagcttagtttcagaactgatttctccaccaaagacaaccaagcagtattgtcttgttatatcggcatatgggatgttgtattatcttgcacagccattgtgctttcctcagatccaagaaccgtcatttgagcggtatgatccggccagtgattcatgggagtcattgcctcctttcccagattattctctagatcaggcacagaccgagatgaccggttatgccgtttgttatggatatatactattgtccatgcaaactgagaagaaatatgaagcggtggcttttcatattcatagcagaacatggcacaaggtgaagactagtccagagaatccttattattatcccttctatgggagggcagtggttttaggtagtactatctatgccttggcgcataatcttgatttggttctggtcttctctttctggtgggattcagacaaggatggtgacattgttaagcggcgacattttctgggcaccccattgtctctgttaataacagccaagtgtcatccgccgcgcaggttactaggggatagaactcagaatttggttcatttaggggggcgatacttttgtgttgtgcaaactggtcagaacattgattcttctgagtatcagtatatgtgtgcgacgaccttcagaattgccggtgatgggcaagaaatgcatatcaagactgttcgctcatccgtttttcgagtcgcgatcgaagggaatgatgaatttgaagttcagttcagcttcacaccagattgcaatgacattgaaccagtggaagaacagtactgtgtgtctagtgcattggttgaaagggaaagtgcgtggacttcggatgtcaaagaagacttcttttccttcccaactggtcctaaactgggattagaggcatttagagccaagaaagaagacgaaaaaaaagtgttcatctccactacttcacctgagactcctctcctttccaaagggtcgtttgggtatgattctgatggtgagcatgcaagttgggtgttagtgttgaaacgaggtcccagatttgcgtgtagctgtggaccaagcaatgactctttggagaggcagtgtgaaagaaaaacacagatacctagatatgttcatagaggtctcagaagattccaaacccggtgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

782

Amino Acids

88.41

Weight (kDa)

8.47

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 285, 1713
AccB1I GGYRCC 4 cut(s) 73, 85, 823, 1676
AccB7I CCANNNNNTGG 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 1324
AccII CGCG 2 cut(s) 1720, 1907
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 9 cut(s) 326, 443, 773, 990, 1324, 1469, 1660, 1715, 1718
AclWI GGATC 2 cut(s) 1297, 1325
AcoI YGGCCR 2 cut(s) 306, 1335
AcsI RAATTY 2 cut(s) 1747, 1925
AcuI CTGAAG 3 cut(s) 944, 1172, 1825
AdeI CACNNNGTG 1 cut(s) 1507
AfaI GTAC 4 cut(s) 105, 292, 1573, 1988
AfiI CCNNNNNNNGG 6 cut(s) 287, 343, 1547, 1548, 1857, 2078
AflIII ACRYGT 1 cut(s) 602
AgeI ACCGGT 1 cut(s) 1406
AgsI TTSAA 6 cut(s) 1011, 1186, 1931, 1970, 2012, 2221
AhlI ACTAGT 1 cut(s) 1514
AjnI CCWGG 2 cut(s) 286, 873
AluBI AGCT 7 cut(s) 211, 795, 852, 1072, 1194, 1944, 2247
AluI AGCT 7 cut(s) 211, 795, 852, 1072, 1194, 1944, 2247
Alw21I GWGCWC 2 cut(s) 213, 1074
Alw26I GTCTC 5 cut(s) 220, 239, 1692, 2141, 2327
AlwI GGATC 2 cut(s) 1297, 1325
Ama87I CYCGRG 3 cut(s) 255, 263, 1166
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 3 cut(s) 95, 306, 1335
ApeKI GCWGC 2 cut(s) 792, 1101
ApoI RAATTY 2 cut(s) 1747, 1925
AsiGI ACCGGT 1 cut(s) 1406
AspLEI GCGC 3 cut(s) 932, 1591, 1722
AspS9I GGNCC 4 cut(s) 871, 2069, 2228, 2252
AsuC2I CCSGG 1 cut(s) 2341
AvaI CYCGRG 3 cut(s) 255, 263, 1166
AvaII GGWCC 4 cut(s) 871, 2069, 2228, 2252
BaeGI GKGCMC 1 cut(s) 1679
BaeI ACNNNNGTAYC 2 cut(s) 1762, 1795
BanI GGYRCC 4 cut(s) 73, 85, 823, 1676
BanII GRGCYC 3 cut(s) 213, 272, 1074
BbsI GAAGAC 6 cut(s) 815, 1067, 1517, 1606, 2052, 2115
Bbv12I GWGCWC 2 cut(s) 213, 1074
BbvI GCAGC 2 cut(s) 804, 1113
BccI CCATC 4 cut(s) 190, 1637, 1850, 2183
BceAI ACGGC 3 cut(s) 221, 396, 1400
BciT130I CCWGG 2 cut(s) 288, 875
BcnI CCSGG 1 cut(s) 2341
BcoDI GTCTC 5 cut(s) 220, 239, 1692, 2141, 2327
BcuI ACTAGT 1 cut(s) 1514
BfmI CTRYAG 1 cut(s) 1032
BfuAI ACCTGC 2 cut(s) 285, 1713
BglI GCCNNNNNGGC 1 cut(s) 94
BisI GCNGC 5 cut(s) 326, 793, 1102, 1661, 1718
BlsI GCNGC 5 cut(s) 327, 794, 1103, 1662, 1719
BmcAI AGTACT 2 cut(s) 1573, 1988
Bme1390I CCNGG 3 cut(s) 288, 875, 2341
Bme18I GGWCC 4 cut(s) 871, 2069, 2228, 2252
BmeT110I CYCGRG 3 cut(s) 255, 263, 1166
BmgT120I GGNCC 4 cut(s) 871, 2069, 2228, 2252
BmiI GGNNCC 5 cut(s) 75, 87, 825, 1678, 2230
BmrFI CCNGG 3 cut(s) 288, 875, 2341
BmrI ACTGGG 1 cut(s) 2087
BmsI GCATC 1 cut(s) 625
BmuI ACTGGG 1 cut(s) 2087
BpiI GAAGAC 6 cut(s) 815, 1067, 1517, 1606, 2052, 2115
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 989
BpuMI CCSGG 1 cut(s) 2341
BsaAI YACGTR 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 2327
BsaJI CCNNGG 2 cut(s) 858, 1584
BsaWI WCCGGW 2 cut(s) 670, 1406
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 2264, 2294
Bsc4I CCNNNNNNNGG 6 cut(s) 287, 343, 1547, 1548, 1857, 2078
Bse118I RCCGGY 2 cut(s) 1406, 1850
Bse1I ACTGG 6 cut(s) 227, 1338, 1795, 1973, 2071, 2082
Bse3DI GCAATG 3 cut(s) 1355, 1966, 2266
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 2 cut(s) 288, 875
BseDI CCNNGG 2 cut(s) 858, 1584
BseGI GGATG 7 cut(s) 667, 919, 1269, 1648, 1711, 1889, 2041
BseLI CCNNNNNNNGG 6 cut(s) 287, 343, 1547, 1548, 1857, 2078
BseMI GCAATG 3 cut(s) 1355, 1966, 2266
BseMII CTCAG 6 cut(s) 1313, 1443, 1757, 1803, 2136, 2338
BseNI ACTGG 6 cut(s) 227, 1338, 1795, 1973, 2071, 2082
BseRI GAGGAG 9 cut(s) 554, 758, 761, 764, 767, 770, 773, 1082, 2142
BseSI GKGCMC 1 cut(s) 1679
BseXI GCAGC 2 cut(s) 804, 1113
Bsh1236I CGCG 2 cut(s) 1720, 1907
Bsh1285I CGRYCG 1 cut(s) 1911
BshFI GGCC 3 cut(s) 97, 308, 1337
BshNI GGYRCC 4 cut(s) 73, 85, 823, 1676
BshTI ACCGGT 1 cut(s) 1406
BsiEI CGRYCG 1 cut(s) 1911
BsiHKAI GWGCWC 2 cut(s) 213, 1074
BsiHKCI CYCGRG 3 cut(s) 255, 263, 1166
BsiSI CCGG 6 cut(s) 309, 671, 1334, 1407, 1851, 2341
BslFI GGGAC 3 cut(s) 399, 405, 2214
BslI CCNNNNNNNGG 6 cut(s) 287, 343, 1547, 1548, 1857, 2078
BsmAI GTCTC 5 cut(s) 220, 239, 1692, 2141, 2327
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 3 cut(s) 399, 405, 2214
BsnI GGCC 3 cut(s) 97, 308, 1337
Bso31I GGTCTC 1 cut(s) 2327
BsoBI CYCGRG 3 cut(s) 255, 263, 1166
Bsp1286I GDGCHC 4 cut(s) 213, 272, 1074, 1679
Bsp13I TCCGGA 1 cut(s) 670
Bsp143I GATC 6 cut(s) 158, 201, 1302, 1330, 1384, 1908
Bsp19I CCATGG 1 cut(s) 858
Bsp68I TCGCGA 1 cut(s) 1907
BspACI CCGC 9 cut(s) 326, 443, 773, 990, 1324, 1469, 1660, 1715, 1718
BspANI GGCC 3 cut(s) 97, 308, 1337
BspCNI CTCAG 6 cut(s) 1312, 1444, 1756, 1804, 2137, 2337
BspEI TCCGGA 1 cut(s) 670
BspFNI CGCG 2 cut(s) 1720, 1907
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 5 cut(s) 75, 87, 825, 1678, 2230
BspMI ACCTGC 2 cut(s) 285, 1713
BspPI GGATC 2 cut(s) 1297, 1325
BspT107I GGYRCC 4 cut(s) 73, 85, 823, 1676
BspTNI GGTCTC 1 cut(s) 2327
BsrBI CCGCTC 1 cut(s) 1324
BsrDI GCAATG 3 cut(s) 1355, 1966, 2266
BsrFI RCCGGY 2 cut(s) 1406, 1850
BsrI ACTGG 6 cut(s) 227, 1338, 1795, 1973, 2071, 2082
BssAI RCCGGY 2 cut(s) 1406, 1850
BssECI CCNNGG 2 cut(s) 858, 1584
BssMI GATC 6 cut(s) 158, 201, 1302, 1330, 1384, 1908
BssT1I CCWWGG 2 cut(s) 858, 1584
Bst2UI CCWGG 2 cut(s) 288, 875
Bst4CI ACNGT 5 cut(s) 26, 1314, 1882, 1986, 1991
Bst6I CTCTTC 1 cut(s) 710
BstAPI GCANNNNNTGC 2 cut(s) 586, 1867
BstBAI YACGTR 1 cut(s) 603
BstC8I GCNNGC 3 cut(s) 786, 790, 2199
BstDEI CTNAG 7 cut(s) 1195, 1299, 1452, 1743, 1812, 2145, 2324
BstDSI CCRYGG 1 cut(s) 858
BstF5I GGATG 7 cut(s) 667, 919, 1269, 1648, 1711, 1889, 2041
BstFNI CGCG 2 cut(s) 1720, 1907
BstHHI GCGC 3 cut(s) 932, 1591, 1722
BstKTI GATC 6 cut(s) 161, 204, 1305, 1333, 1387, 1911
BstMAI GTCTC 5 cut(s) 220, 239, 1692, 2141, 2327
BstMBI GATC 6 cut(s) 158, 201, 1302, 1330, 1384, 1908
BstMCI CGRYCG 1 cut(s) 1911
BstMWI GCNNNNNNNGC 6 cut(s) 94, 408, 586, 970, 1867, 2096
BstNI CCWGG 2 cut(s) 288, 875
BstNSI RCATGY 2 cut(s) 788, 2201
BstSCI CCNGG 3 cut(s) 286, 873, 2339
BstSFI CTRYAG 1 cut(s) 1032
BstSLI GKGCMC 1 cut(s) 1679
BstUI CGCG 2 cut(s) 1720, 1907
BstV1I GCAGC 2 cut(s) 804, 1113
BstV2I GAAGAC 6 cut(s) 815, 1067, 1517, 1606, 2052, 2115
BstX2I RGATCY 1 cut(s) 1302
BstYI RGATCY 1 cut(s) 1302
BsuRI GGCC 3 cut(s) 97, 308, 1337
BtgI CCRYGG 1 cut(s) 858
BtsCI GGATG 7 cut(s) 667, 919, 1269, 1648, 1711, 1889, 2041
BtsI GCAGTG 4 cut(s) 231, 587, 1563, 2285
BtsIMutI CAGTG 7 cut(s) 231, 587, 999, 1345, 1563, 1980, 2285
BtuMI TCGCGA 1 cut(s) 1907
BveI ACCTGC 2 cut(s) 285, 1713
Cac8I GCNNGC 3 cut(s) 786, 790, 2199
CciI TCATGA 1 cut(s) 430
CfoI GCGC 3 cut(s) 932, 1591, 1722
Cfr10I RCCGGY 2 cut(s) 1406, 1850
Cfr13I GGNCC 4 cut(s) 871, 2069, 2228, 2252
Csp6I GTAC 4 cut(s) 104, 291, 1572, 1987
CspAI ACCGGT 1 cut(s) 1406
CviQI GTAC 4 cut(s) 104, 291, 1572, 1987
DdeI CTNAG 7 cut(s) 1195, 1299, 1452, 1743, 1812, 2145, 2324
DpnI GATC 6 cut(s) 160, 203, 1304, 1332, 1386, 1910
DpnII GATC 6 cut(s) 158, 201, 1302, 1330, 1384, 1908
DraI TTTAAA 1 cut(s) 678
DraIII CACNNNGTG 1 cut(s) 1507
EaeI YGGCCR 2 cut(s) 306, 1335
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
EciI GGCGGA 3 cut(s) 788, 1005, 1704
Ecl136II GAGCTC 2 cut(s) 211, 1072
Eco130I CCWWGG 2 cut(s) 858, 1584
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 3 cut(s) 213, 272, 1074
Eco31I GGTCTC 1 cut(s) 2327
Eco47I GGWCC 4 cut(s) 871, 2069, 2228, 2252
Eco53kI GAGCTC 2 cut(s) 211, 1072
Eco57I CTGAAG 3 cut(s) 944, 1172, 1825
Eco88I CYCGRG 3 cut(s) 255, 263, 1166
EcoICRI GAGCTC 2 cut(s) 211, 1072
EcoO109I RGGNCCY 1 cut(s) 2228
EcoRII CCWGG 2 cut(s) 286, 873
EcoT14I CCWWGG 2 cut(s) 858, 1584
EcoT22I ATGCAT 2 cut(s) 1177, 1872
EcoT38I GRGCYC 3 cut(s) 213, 272, 1074
ErhI CCWWGG 2 cut(s) 858, 1584
Esp3I CGTCTC 1 cut(s) 220
FaqI GGGAC 3 cut(s) 399, 405, 2214
FauNDI CATATG 1 cut(s) 1258
Fnu4HI GCNGC 5 cut(s) 326, 793, 1102, 1661, 1718
FokI GGATG 7 cut(s) 654, 926, 1276, 1655, 1698, 1876, 2048
FriOI GRGCYC 3 cut(s) 213, 272, 1074
Fsp4HI GCNGC 5 cut(s) 326, 793, 1102, 1661, 1718
GlaI GCGC 3 cut(s) 931, 1590, 1721
GluI GCNGC 5 cut(s) 326, 793, 1102, 1661, 1718
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 3 cut(s) 97, 308, 1337
HapII CCGG 6 cut(s) 309, 671, 1334, 1407, 1851, 2341
HhaI GCGC 3 cut(s) 932, 1591, 1722
Hin6I GCGC 3 cut(s) 930, 1589, 1720
HinP1I GCGC 3 cut(s) 930, 1589, 1720
HindIII AAGCTT 1 cut(s) 1192
HpaII CCGG 6 cut(s) 309, 671, 1334, 1407, 1851, 2341
Hpy166II GTNNAC 4 cut(s) 104, 871, 2028, 2252
Hpy8I GTNNAC 4 cut(s) 104, 871, 2028, 2252
Hpy99I CGWCG 1 cut(s) 1837
HpyCH4III ACNGT 5 cut(s) 26, 1314, 1882, 1986, 1991
HpyCH4IV ACGT 3 cut(s) 150, 318, 602
HpyCH4V TGCA 9 cut(s) 589, 1175, 1280, 1447, 1786, 1870, 1959, 2003, 2201
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 408, 586, 970, 1867, 2096
HpyF3I CTNAG 7 cut(s) 1195, 1299, 1452, 1743, 1812, 2145, 2324
HpySE526I ACGT 3 cut(s) 150, 318, 602
HspAI GCGC 3 cut(s) 930, 1589, 1720
Kpn2I TCCGGA 1 cut(s) 670
Kzo9I GATC 6 cut(s) 158, 201, 1302, 1330, 1384, 1908
LmnI GCTCC 2 cut(s) 781, 1069
Lsp1109I GCAGC 2 cut(s) 804, 1113
LweI GCATC 1 cut(s) 625
MaeII ACGT 3 cut(s) 150, 318, 602
MaeIII GTNAC 6 cut(s) 20, 438, 458, 1159, 1646, 1725
MalI GATC 6 cut(s) 160, 203, 1304, 1332, 1386, 1910
MbiI CCGCTC 1 cut(s) 1324
MboI GATC 6 cut(s) 158, 201, 1302, 1330, 1384, 1908
MflI RGATCY 1 cut(s) 1302
MhlI GDGCHC 4 cut(s) 213, 272, 1074, 1679
MluCI AATT 5 cut(s) 282, 1095, 1747, 1845, 1925
MlyI GAGTC 9 cut(s) 146, 187, 247, 255, 658, 1361, 1911, 2143, 2258
MmeI TCCRAC 1 cut(s) 243
Mph1103I ATGCAT 2 cut(s) 1177, 1872
MroI TCCGGA 1 cut(s) 670
MseI TTAA 4 cut(s) 677, 996, 1656, 1694
MslI CAYNNNNRTG 2 cut(s) 525, 603
MspI CCGG 6 cut(s) 309, 671, 1334, 1407, 1851, 2341
MspR9I CCNGG 3 cut(s) 288, 875, 2341
MvaI CCWGG 2 cut(s) 288, 875
MvnI CGCG 2 cut(s) 1720, 1907
MwoI GCNNNNNNNGC 6 cut(s) 94, 408, 586, 970, 1867, 2096
NciI CCSGG 1 cut(s) 2341
NcoI CCATGG 1 cut(s) 858
NdeI CATATG 1 cut(s) 1258
NdeII GATC 6 cut(s) 158, 201, 1302, 1330, 1384, 1908
NlaIV GGNNCC 5 cut(s) 75, 87, 825, 1678, 2230
NmuCI GTSAC 4 cut(s) 438, 458, 1159, 1646
NruI TCGCGA 1 cut(s) 1907
NsiI ATGCAT 2 cut(s) 1177, 1872
NspI RCATGY 2 cut(s) 788, 2201
PaeI GCATGC 2 cut(s) 788, 2201
PaeR7I CTCGAG 2 cut(s) 255, 263
PagI TCATGA 1 cut(s) 430
PceI AGGCCT 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 599
PfeI GAWTC 8 cut(s) 881, 917, 1343, 1525, 1631, 1805, 2183, 2331
PflMI CCANNNNNTGG 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 1406
PkrI GCNGC 5 cut(s) 327, 794, 1103, 1662, 1719
Ple19I CGATCG 1 cut(s) 1911
PleI GAGTC 9 cut(s) 145, 186, 247, 255, 657, 1360, 1910, 2143, 2258
PpsI GAGTC 9 cut(s) 145, 186, 247, 255, 657, 1360, 1910, 2143, 2258
Ppu21I YACGTR 1 cut(s) 603
PpuMI RGGWCCY 1 cut(s) 2228
Psp124BI GAGCTC 2 cut(s) 213, 1074
Psp5II RGGWCCY 1 cut(s) 2228
Psp6I CCWGG 2 cut(s) 286, 873
PspGI CCWGG 2 cut(s) 286, 873
PspN4I GGNNCC 5 cut(s) 75, 87, 825, 1678, 2230
PspPI GGNCC 4 cut(s) 871, 2069, 2228, 2252
PspPPI RGGWCCY 1 cut(s) 2228
PspXI VCTCGAGB 2 cut(s) 255, 263
PsuI RGATCY 1 cut(s) 1302
PvuI CGATCG 1 cut(s) 1911
RruI TCGCGA 1 cut(s) 1907
RsaI GTAC 4 cut(s) 105, 292, 1573, 1988
RsaNI GTAC 4 cut(s) 104, 291, 1572, 1987
RseI CAYNNNNRTG 2 cut(s) 525, 603
SacI GAGCTC 2 cut(s) 213, 1074
SaqAI TTAA 4 cut(s) 677, 996, 1656, 1694
SatI GCNGC 5 cut(s) 326, 793, 1102, 1661, 1718
Sau3AI GATC 6 cut(s) 158, 201, 1302, 1330, 1384, 1908
Sau96I GGNCC 4 cut(s) 871, 2069, 2228, 2252
ScaI AGTACT 2 cut(s) 1573, 1988
SchI GAGTC 9 cut(s) 146, 187, 247, 255, 658, 1361, 1911, 2143, 2258
ScrFI CCNGG 3 cut(s) 288, 875, 2341
SduI GDGCHC 4 cut(s) 213, 272, 1074, 1679
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 1 cut(s) 1032
Sfr274I CTCGAG 2 cut(s) 255, 263
SinI GGWCC 4 cut(s) 871, 2069, 2228, 2252
SlaI CTCGAG 2 cut(s) 255, 263
SmiMI CAYNNNNRTG 2 cut(s) 525, 603
SmlI CTYRAG 3 cut(s) 255, 263, 968
SmoI CTYRAG 3 cut(s) 255, 263, 968
SpeI ACTAGT 1 cut(s) 1514
SphI GCATGC 2 cut(s) 788, 2201
Sse9I AATT 5 cut(s) 282, 1095, 1747, 1845, 1925
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 9 cut(s) 326, 443, 773, 990, 1324, 1469, 1660, 1715, 1718
SstI GAGCTC 2 cut(s) 213, 1074
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 3 cut(s) 286, 873, 2339
StyI CCWWGG 2 cut(s) 858, 1584
TaaI ACNGT 5 cut(s) 26, 1314, 1882, 1986, 1991
TaiI ACGT 3 cut(s) 153, 321, 605
TaqI TCGA 6 cut(s) 256, 264, 272, 836, 1900, 1911
TaqII GACCGA 1 cut(s) 1412
TasI AATT 5 cut(s) 282, 1095, 1747, 1845, 1925
TatI WGTACW 3 cut(s) 103, 1571, 1986
TauI GCSGC 3 cut(s) 328, 1663, 1720
TfiI GAWTC 8 cut(s) 881, 917, 1343, 1525, 1631, 1805, 2183, 2331
Tru1I TTAA 4 cut(s) 677, 996, 1656, 1694
Tru9I TTAA 4 cut(s) 677, 996, 1656, 1694
TscAI CASTG 7 cut(s) 238, 587, 1006, 1345, 1563, 1980, 2285
TseFI GTSAC 4 cut(s) 438, 458, 1159, 1646
TseI GCWGC 2 cut(s) 792, 1101
Tsp45I GTSAC 4 cut(s) 438, 458, 1159, 1646
TspGWI ACGGA 2 cut(s) 1079, 1882
TspRI CASTG 7 cut(s) 238, 587, 1006, 1345, 1563, 1980, 2285
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 4 cut(s) 871, 2069, 2228, 2252
XapI RAATTY 2 cut(s) 1747, 1925
XbaI TCTAGA 1 cut(s) 1381
XceI RCATGY 2 cut(s) 788, 2201
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XhoI CTCGAG 2 cut(s) 255, 263
ZrmI AGTACT 2 cut(s) 1573, 1988
Zsp2I ATGCAT 2 cut(s) 1177, 1872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.