Rh2BG637600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000150
Physical Location & Seq
Reverse (-)
85824990 .. 85825380
391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG637600.1

Sequence Viewer

Length: 267 bp
ATGGATGTCAGGACCCTACGTTCATCTGTATTTCAAGTCGGCATGATGGGCAGTGGCGCTTTCCATGTAAACTTCAGCTTCACACCGGACTGCGAGGATATTGAACCAGAAGAACAATACTGTCCAACTGCACCGGCCGGAAGTAAAAGTGAAAGTGCATTGACTTCAGAAGAAAAAGGAAATATAGATCAATGTAGGTGGGATGTTGCAACTGGAAAACAAGAGGACTTCTTCTCCATTCCAACCAAACCGCTTATTCCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.68

Weight (kDa)

4.42

Isoelectric Point (pI)

60.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 58, 150
AgsI TTSAA 2 cut(s) 35, 104
AloI GAACNNNNNNTCC 1 cut(s) 36
AluBI AGCT 2 cut(s) 78, 264
AluI AGCT 2 cut(s) 78, 264
AoxI GGCC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 12
AvaII GGWCC 1 cut(s) 12
BccI CCATC 1 cut(s) 40
BfaI CTAG 1 cut(s) 265
BfoI RGCGCY 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 217
BseGI GGATG 2 cut(s) 10, 208
BseNI ACTGG 1 cut(s) 217
BseX3I CGGCCG 1 cut(s) 135
BsgI GTGCAG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 3 cut(s) 86, 134, 138
BsnI GGCC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 133
BssMI GATC 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 122
BstF5I GGATG 2 cut(s) 10, 208
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstZI CGGCCG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 2 cut(s) 10, 208
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 12
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 2 cut(s) 43, 65
CviJI RGCY 3 cut(s) 78, 137, 264
CviKI_1 RGCY 3 cut(s) 78, 137, 264
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 135
EagI CGGCCG 1 cut(s) 135
EclXI CGGCCG 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 12
Eco52I CGGCCG 1 cut(s) 135
Eco57I CTGAAG 2 cut(s) 58, 150
EcoO109I RGGNCCY 1 cut(s) 12
FaeI CATG 2 cut(s) 46, 68
FaiI YATR 3 cut(s) 44, 66, 185
FatI CATG 2 cut(s) 42, 64
FokI GGATG 2 cut(s) 17, 215
FspBI CTAG 1 cut(s) 265
GlaI GCGC 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 1 cut(s) 137
HapII CCGG 3 cut(s) 86, 134, 138
HhaI GCGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 46, 68
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HpaII CCGG 3 cut(s) 86, 134, 138
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 131, 158, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 46, 68
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 5 cut(s) 99, 120, 147, 151, 198
MaeI CTAG 1 cut(s) 265
MaeII ACGT 1 cut(s) 19
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 3 cut(s) 122, 182, 223
MmeI TCCRAC 2 cut(s) 149, 266
MnlI CCTC 2 cut(s) 88, 217
MspI CCGG 3 cut(s) 86, 134, 138
MwoI GCNNNNNNNGC 1 cut(s) 48
NdeII GATC 1 cut(s) 187
NlaIII CATG 2 cut(s) 46, 68
NlaIV GGNNCC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 1 cut(s) 12
PspPPI RGGWCCY 1 cut(s) 12
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 12
SetI ASST 4 cut(s) 22, 80, 200, 266
SinI GGWCC 1 cut(s) 12
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 22
TscAI CASTG 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 12
XspI CTAG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.