Rmu_sc0000556.1_g000044

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000556.1
OG0000150
Physical Location & Seq
Forward (+)
220025 .. 220885
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000556.1_g000044.1.cds

Sequence Viewer

Length: 861 bp
atgctgtactatcttgcacaaccattgtgctttcctagtattcaagaaccatcattcgagcgatatgatccgtccagtgatttgtgggagtcattgcctcctttcccagattattctctggatcaggcacagactgagatgaccggttatgccgtttgttatggatatatactattgtccatgcaaactgagaagaaatatgaagcggtggcttttcatattcatagcagaacatggcacaaggtgaagattagtccagagaatccttattattatcctttttatgggagggcagtggttttaggtagtactatctatgccttggcgcataatcttgatttggttctggtcttctctttctggtgggattcagacaaggatggtgacattgttaagcggcgacattttctgggcaccccattgcctctgttaataacaaccaagtgtcatccgccgcgtaggttactaggggatagaactcaaaatttggttcatttaggggggcgatacttttgtgttgtgcaaactggtcagaacattgattcttctgagtatcagtatgtgtgtgcgacgaccttcagaattgccggtgaagggcaagaaatgcatatcaagactgttcgctcatctgtttttcgagtcgcgatcgaagggaatgatgaatttgaagttaagttcagctttacgcctgattataaggacattgaaccggaagaagaagagtatagcgcaactaatacactgcctgaaagtgaaagtgctgcatggacttcaaaggtgggagaagacttcttttccttcccaactggtcctaaactggtattggaggcattcagaaccaaaaaagaagacaaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.99

Weight (kDa)

5.33

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AccB1I GGYRCC 1 cut(s) 413
AccII CGCG 2 cut(s) 457, 644
AciI CCGC 4 cut(s) 206, 397, 452, 455
AclWI GGATC 2 cut(s) 62, 129
AcsI RAATTY 2 cut(s) 484, 662
AcuI CTGAAG 1 cut(s) 562
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 2 cut(s) 8, 310
AfiI CCNNNNNNNGG 2 cut(s) 284, 594
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 4 cut(s) 44, 668, 707, 774
AluBI AGCT 1 cut(s) 681
AluI AGCT 1 cut(s) 681
AlwI GGATC 2 cut(s) 62, 129
ApeKI GCWGC 1 cut(s) 761
ApoI RAATTY 2 cut(s) 484, 662
AsiGI ACCGGT 1 cut(s) 143
AspLEI GCGC 2 cut(s) 328, 731
AspS9I GGNCC 1 cut(s) 809
AsuHPI GGTGA 3 cut(s) 256, 395, 602
AvaII GGWCC 1 cut(s) 809
BaeGI GKGCMC 1 cut(s) 416
BaeI ACNNNNGTAYC 2 cut(s) 499, 532
BanI GGYRCC 1 cut(s) 413
BbsI GAAGAC 3 cut(s) 343, 792, 855
BbvI GCAGC 1 cut(s) 748
BccI CCATC 2 cut(s) 58, 374
BceAI ACGGC 1 cut(s) 137
BfaI CTAG 2 cut(s) 36, 467
BisI GCNGC 3 cut(s) 398, 455, 762
BlsI GCNGC 3 cut(s) 399, 456, 763
BmcAI AGTACT 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 809
BmgT120I GGNCC 1 cut(s) 809
BmiI GGNNCC 1 cut(s) 415
BpiI GAAGAC 3 cut(s) 343, 792, 855
BsaJI CCNNGG 1 cut(s) 321
BsaWI WCCGGW 2 cut(s) 143, 709
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 594
Bse118I RCCGGY 2 cut(s) 143, 587
Bse1I ACTGG 4 cut(s) 75, 532, 811, 822
Bse3DI GCAATG 2 cut(s) 92, 419
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 2 cut(s) 385, 448
BseLI CCNNNNNNNGG 2 cut(s) 284, 594
BseMI GCAATG 2 cut(s) 92, 419
BseMII CTCAG 3 cut(s) 126, 180, 540
BseNI ACTGG 4 cut(s) 75, 532, 811, 822
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 1 cut(s) 748
Bsh1236I CGCG 2 cut(s) 457, 644
Bsh1285I CGRYCG 1 cut(s) 648
BshNI GGYRCC 1 cut(s) 413
BshTI ACCGGT 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 648
BsiSI CCGG 3 cut(s) 144, 588, 710
BslI CCNNNNNNNGG 2 cut(s) 284, 594
BsmI GAATGC 1 cut(s) 830
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 3 cut(s) 67, 121, 645
Bsp68I TCGCGA 1 cut(s) 644
BspACI CCGC 4 cut(s) 206, 397, 452, 455
BspCNI CTCAG 3 cut(s) 127, 181, 541
BspFNI CGCG 2 cut(s) 457, 644
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 2 cut(s) 62, 129
BspT107I GGYRCC 1 cut(s) 413
BsrDI GCAATG 2 cut(s) 92, 419
BsrFI RCCGGY 2 cut(s) 143, 587
BsrI ACTGG 4 cut(s) 75, 532, 811, 822
BssAI RCCGGY 2 cut(s) 143, 587
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 3 cut(s) 67, 121, 645
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 619
Bst6I CTCTTC 1 cut(s) 714
BstAPI GCANNNNNTGC 1 cut(s) 604
BstDEI CTNAG 3 cut(s) 135, 189, 549
BstF5I GGATG 2 cut(s) 385, 448
BstFNI CGCG 2 cut(s) 457, 644
BstHHI GCGC 2 cut(s) 328, 731
BstKTI GATC 3 cut(s) 70, 124, 648
BstMBI GATC 3 cut(s) 67, 121, 645
BstMCI CGRYCG 1 cut(s) 648
BstMWI GCNNNNNNNGC 1 cut(s) 604
BstSLI GKGCMC 1 cut(s) 416
BstUI CGCG 2 cut(s) 457, 644
BstV1I GCAGC 1 cut(s) 748
BstV2I GAAGAC 3 cut(s) 343, 792, 855
BtsCI GGATG 2 cut(s) 385, 448
BtsI GCAGTG 2 cut(s) 300, 740
BtsIMutI CAGTG 3 cut(s) 82, 300, 740
BtuMI TCGCGA 1 cut(s) 644
CfoI GCGC 2 cut(s) 328, 731
Cfr10I RCCGGY 2 cut(s) 143, 587
Cfr13I GGNCC 1 cut(s) 809
Csp6I GTAC 2 cut(s) 7, 309
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 3 cut(s) 181, 234, 765
CviJI RGCY 2 cut(s) 212, 681
CviKI_1 RGCY 2 cut(s) 212, 681
CviQI GTAC 2 cut(s) 7, 309
DdeI CTNAG 3 cut(s) 135, 189, 549
DpnI GATC 3 cut(s) 69, 123, 647
DpnII GATC 3 cut(s) 67, 121, 645
DraIII CACNNNGTG 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
EciI GGCGGA 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 809
Eco57I CTGAAG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 3 cut(s) 184, 237, 768
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FatI CATG 3 cut(s) 180, 233, 764
Fnu4HI GCNGC 3 cut(s) 398, 455, 762
FokI GGATG 2 cut(s) 392, 435
Fsp4HI GCNGC 3 cut(s) 398, 455, 762
FspBI CTAG 2 cut(s) 36, 467
GlaI GCGC 2 cut(s) 327, 730
GluI GCNGC 3 cut(s) 398, 455, 762
HapII CCGG 3 cut(s) 144, 588, 710
HhaI GCGC 2 cut(s) 328, 731
Hin1II CATG 3 cut(s) 184, 237, 768
Hin6I GCGC 2 cut(s) 326, 729
HinP1I GCGC 2 cut(s) 326, 729
HinfI GANTC 5 cut(s) 89, 262, 368, 542, 639
HpaII CCGG 3 cut(s) 144, 588, 710
HphI GGTGA 3 cut(s) 256, 395, 602
Hpy188I TCNGA 5 cut(s) 373, 534, 550, 581, 836
Hpy188III TCNNGA 6 cut(s) 44, 119, 257, 335, 613, 643
Hpy99I CGWCG 1 cut(s) 574
HpyAV CCTTC 4 cut(s) 586, 587, 644, 808
HpyCH4III ACNGT 1 cut(s) 619
HpyCH4V TGCA 5 cut(s) 17, 184, 523, 607, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 604
HpyF3I CTNAG 3 cut(s) 135, 189, 549
Hsp92II CATG 3 cut(s) 184, 237, 768
HspAI GCGC 2 cut(s) 326, 729
Kzo9I GATC 3 cut(s) 67, 121, 645
Lsp1109I GCAGC 1 cut(s) 748
MaeI CTAG 2 cut(s) 36, 467
MaeIII GTNAC 2 cut(s) 383, 462
MalI GATC 3 cut(s) 69, 123, 647
MboI GATC 3 cut(s) 67, 121, 645
MboII GAAGA 9 cut(s) 205, 259, 343, 537, 725, 728, 731, 797, 860
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 3 cut(s) 484, 582, 662
MlyI GAGTC 2 cut(s) 98, 648
MnlI CCTC 4 cut(s) 108, 282, 435, 820
Mph1103I ATGCAT 1 cut(s) 609
MseI TTAA 3 cut(s) 393, 431, 672
MspI CCGG 3 cut(s) 144, 588, 710
Mva1269I GAATGC 1 cut(s) 830
MvnI CGCG 2 cut(s) 457, 644
MwoI GCNNNNNNNGC 1 cut(s) 604
NdeII GATC 3 cut(s) 67, 121, 645
NlaIII CATG 3 cut(s) 184, 237, 768
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 383
NruI TCGCGA 1 cut(s) 644
NsiI ATGCAT 1 cut(s) 609
PctI GAATGC 1 cut(s) 830
PfeI GAWTC 3 cut(s) 262, 368, 542
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 3 cut(s) 399, 456, 763
Ple19I CGATCG 1 cut(s) 648
PleI GAGTC 2 cut(s) 97, 647
PpsI GAGTC 2 cut(s) 97, 647
PsiI TTATAA 1 cut(s) 696
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 809
PvuI CGATCG 1 cut(s) 648
RruI TCGCGA 1 cut(s) 644
RsaI GTAC 2 cut(s) 8, 310
RsaNI GTAC 2 cut(s) 7, 309
SaqAI TTAA 3 cut(s) 393, 431, 672
SatI GCNGC 3 cut(s) 398, 455, 762
Sau3AI GATC 3 cut(s) 67, 121, 645
Sau96I GGNCC 1 cut(s) 809
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 2 cut(s) 98, 648
SduI GDGCHC 1 cut(s) 416
SetI ASST 6 cut(s) 246, 307, 464, 578, 683, 780
SinI GGWCC 1 cut(s) 809
Sse9I AATT 3 cut(s) 484, 582, 662
SsiI CCGC 4 cut(s) 206, 397, 452, 455
SspMI CTAG 2 cut(s) 36, 467
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 619
TaqI TCGA 3 cut(s) 57, 637, 648
TasI AATT 3 cut(s) 484, 582, 662
TatI WGTACW 2 cut(s) 6, 308
TauI GCSGC 2 cut(s) 400, 457
TfiI GAWTC 3 cut(s) 262, 368, 542
Tru1I TTAA 3 cut(s) 393, 431, 672
Tru9I TTAA 3 cut(s) 393, 431, 672
TscAI CASTG 3 cut(s) 82, 300, 747
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 5 cut(s) 206, 212, 216, 482, 675
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 3 cut(s) 82, 300, 747
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 2 cut(s) 484, 662
XspI CTAG 2 cut(s) 36, 467
ZrmI AGTACT 1 cut(s) 310
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.