Rh1DG389800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000150
Physical Location & Seq
Reverse (-)
60853764 .. 60854225
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG389800.1

Sequence Viewer

Length: 462 bp
ATGGAGATAAGTGTAAACCAGCGGAAAGATAAATCCATGTTTGTTCTGGTGAGTTTCTATTGTGGTCCATACCATGGTGCACTATATGAAGTAAAACTTGAGCATGGAGAATCCAGTAAAGCTTCGAGTGGTACACGAGTTGAAACCCCTCCACCAGTACTCGTCCCAGTAATTAAGTTTTTTGAGAAGCATTTGGATCTGCCAAAGAATTTTTTGTTTGAGGGTGTGAGATTTGGCAGCTGCTCCAAGTTATATCTGATGGCAAATGGACACGGATCACCTTGCAAGCCCATCACAATCCCCAATTCGTTTATTTTTGACACAGACACAAACTCAGGCTCAGGCGCAGGCCTGAGCCTCCAGCACTTCTCTCCATCCAAAGCAGCTAAACCGTATGGTGTTGTTATATCTGCATATGCTGCGCCTGAGCCTCCAGCACTTCTCTCCATCCAAAGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.54

Weight (kDa)

8.42

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AciI CCGC 1 cut(s) 22
AclWI GGATC 2 cut(s) 204, 283
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 2 cut(s) 133, 159
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 4 cut(s) 122, 240, 386, 459
AluI AGCT 4 cut(s) 122, 240, 386, 459
Alw21I GWGCWC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 2 cut(s) 204, 283
AoxI GGCC 1 cut(s) 349
ApaLI GTGCAC 1 cut(s) 78
ApeKI GCWGC 5 cut(s) 237, 240, 383, 419, 456
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 2 cut(s) 347, 424
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 61, 270
AvaII GGWCC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BauI CACGAG 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 4 cut(s) 227, 249, 395, 406
BccI CCATC 4 cut(s) 253, 299, 382, 455
BisI GCNGC 5 cut(s) 238, 241, 384, 420, 457
BlsI GCNGC 5 cut(s) 239, 242, 385, 421, 458
BmcAI AGTACT 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 161
BpmI CTGGAG 2 cut(s) 344, 417
Bpu10I CCTNAGC 3 cut(s) 340, 353, 426
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 114, 155, 167
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 2 cut(s) 374, 447
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 4 cut(s) 344, 348, 354, 417
BseNI ACTGG 3 cut(s) 114, 155, 167
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 4 cut(s) 227, 249, 395, 406
BshFI GGCC 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 2 cut(s) 196, 275
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 4 cut(s) 345, 347, 353, 418
BspPI GGATC 2 cut(s) 204, 283
BsrI ACTGG 3 cut(s) 114, 155, 167
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 196, 275
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 393
BstAPI GCANNNNNTGC 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 287, 349
BstDEI CTNAG 4 cut(s) 334, 340, 353, 426
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 374, 447
BstHHI GCGC 2 cut(s) 347, 424
BstKTI GATC 2 cut(s) 199, 278
BstMBI GATC 2 cut(s) 196, 275
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 4 cut(s) 227, 249, 395, 406
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 374, 447
Cac8I GCNNGC 2 cut(s) 287, 349
CfoI GCGC 2 cut(s) 347, 424
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 132, 158
CviAII CATG 3 cut(s) 37, 74, 104
CviJI RGCY 9 cut(s) 122, 240, 289, 339, 351, 357, 386, 430, 459
CviKI_1 RGCY 9 cut(s) 122, 240, 289, 339, 351, 357, 386, 430, 459
CviQI GTAC 2 cut(s) 132, 158
DdeI CTNAG 4 cut(s) 334, 340, 353, 426
DpnI GATC 2 cut(s) 198, 277
DpnII GATC 2 cut(s) 196, 275
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 3 cut(s) 40, 77, 107
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 149
FatI CATG 3 cut(s) 36, 73, 103
FauNDI CATATG 1 cut(s) 415
Fnu4HI GCNGC 5 cut(s) 238, 241, 384, 420, 457
FokI GGATG 2 cut(s) 361, 434
Fsp4HI GCNGC 5 cut(s) 238, 241, 384, 420, 457
GlaI GCGC 2 cut(s) 346, 423
GluI GCNGC 5 cut(s) 238, 241, 384, 420, 457
GsuI CTGGAG 2 cut(s) 344, 417
HaeIII GGCC 1 cut(s) 351
HhaI GCGC 2 cut(s) 347, 424
Hin1II CATG 3 cut(s) 40, 77, 107
Hin6I GCGC 2 cut(s) 345, 422
HinP1I GCGC 2 cut(s) 345, 422
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 1 cut(s) 110
HphI GGTGA 2 cut(s) 61, 270
Hpy166II GTNNAC 3 cut(s) 16, 80, 134
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 3 cut(s) 16, 80, 134
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4V TGCA 3 cut(s) 80, 285, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 4 cut(s) 334, 340, 353, 426
Hsp92II CATG 3 cut(s) 40, 77, 107
HspAI GCGC 2 cut(s) 345, 422
Kzo9I GATC 2 cut(s) 196, 275
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 4 cut(s) 227, 249, 395, 406
MalI GATC 2 cut(s) 198, 277
MboI GATC 2 cut(s) 196, 275
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 3 cut(s) 171, 208, 304
MnlI CCTC 4 cut(s) 159, 214, 368, 441
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 22, 240
MwoI GCNNNNNNNGC 1 cut(s) 419
NcoI CCATGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 415
NdeII GATC 2 cut(s) 196, 275
NlaIII CATG 3 cut(s) 40, 77, 107
PceI AGGCCT 1 cut(s) 351
PfeI GAWTC 1 cut(s) 110
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 5 cut(s) 239, 242, 385, 421, 458
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 2 cut(s) 133, 159
RsaNI GTAC 2 cut(s) 132, 158
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 5 cut(s) 238, 241, 384, 420, 457
Sau3AI GATC 2 cut(s) 196, 275
Sau96I GGNCC 1 cut(s) 65
ScaI AGTACT 1 cut(s) 159
SduI GDGCHC 1 cut(s) 82
SetI ASST 5 cut(s) 124, 242, 283, 388, 461
SinI GGWCC 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 3 cut(s) 171, 208, 304
SseBI AGGCCT 1 cut(s) 351
SsiI CCGC 1 cut(s) 22
StuI AGGCCT 1 cut(s) 351
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 125
TasI AATT 3 cut(s) 171, 208, 304
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 5 cut(s) 237, 240, 383, 419, 456
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 288
Van91I CCANNNNNTGG 1 cut(s) 74
VneI GTGCAC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
ZrmI AGTACT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.