MD06G1078700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000150
Physical Location & Seq
Reverse (-)
19428506 .. 19430620
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1078700.v1.1.491

Sequence Viewer

Length: 723 bp
ATGGAGGAGGAGCATACTTCATCGATGGTAAATAAAGATGTTCAAGATAGGTCTCTGTTTTTATTCGCGCCTTTTCTGAGTGGTCCACATTGCGCTGCATTCTTTGAAGTACAACTCAAACAACAGGGAGATGATCAAGTGAAAGGAGGAGGAAGAGTCACCCGCGAAACCCCCGTGCTCAAACCTCTTCTCAAGTTATTTGATGGTCCAGAGCAGTCTTATCTCTGTACTGCTGCAAGGATTTTCAGCCACTCCAAGGTATATGTACTTCTAGAGGATGGTCATCGTCCCAGGCCATTGGAGGCTGACACCATTACCAACACCAACACTCCACGTGCGGGGTATGCTTTTGGCCTGAAAACTGGATCATTTGATAAATTCGCTTCCCTAAAATCAATTAAGCCACTTGGTACTCTTCTTTCGGCCCATGGACAACTTTATTATATTGCTTCTCCATGGGGCTTCCCATGGATTCCGGAAGCATGCTTTGAGCGTTATGATCCTGCTCATGATAAATGGGACACACTGCCCTCTTTTCCCTACTATTCTTATCGTTTGGATCGTACGTATAAACTGGTTATGCTGTTTGTTACGGCTGGATTTTGTTTTCGATGCTGGACATGCGTTCCCAGACAGTCCAACTCTTTGGCTATCATGACAAGAAAAATGAATGGTATCCAGTTAAAGGTTCCACTGGTTTCGCTGGGAGGGCCGTGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.17

Weight (kDa)

8.84

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 68, 165
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 2 cut(s) 163, 338
AclWI GGATC 3 cut(s) 373, 494, 567
AcsI RAATTY 1 cut(s) 377
AcvI CACGTG 1 cut(s) 335
AfaI GTAC 5 cut(s) 111, 229, 267, 412, 565
AfiI CCNNNNNNNGG 3 cut(s) 256, 338, 685
AgsI TTSAA 2 cut(s) 44, 107
AjnI CCWGG 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 3 cut(s) 373, 494, 567
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 4 cut(s) 293, 352, 423, 710
ApeKI GCWGC 2 cut(s) 95, 233
ApoI RAATTY 1 cut(s) 377
AspLEI GCGC 2 cut(s) 70, 95
AspS9I GGNCC 4 cut(s) 83, 206, 424, 710
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 2 cut(s) 83, 206
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbrPI CACGTG 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 82, 220
BccI CCATC 3 cut(s) 19, 197, 272
BceAI ACGGC 2 cut(s) 609, 697
BciT130I CCWGG 1 cut(s) 292
BciVI GTATCC 1 cut(s) 686
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 272
BfuI GTATCC 1 cut(s) 686
BisI GCNGC 2 cut(s) 96, 234
BlsI GCNGC 2 cut(s) 97, 235
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 2 cut(s) 83, 206
BmgT120I GGNCC 4 cut(s) 83, 206, 424, 710
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 23
BsaAI YACGTR 2 cut(s) 335, 567
BsaBI GATNNNNATC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 6 cut(s) 255, 290, 427, 455, 467, 713
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 313, 343
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 338, 685
Bse1I ACTGG 4 cut(s) 367, 579, 679, 699
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 292
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 6 cut(s) 255, 290, 427, 455, 467, 713
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 256, 338, 685
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 4 cut(s) 367, 579, 679, 699
BseRI GAGGAG 3 cut(s) 20, 23, 162
BseXI GCAGC 2 cut(s) 82, 220
BseYI CCCAGC 1 cut(s) 703
Bsh1236I CGCG 2 cut(s) 68, 165
BshFI GGCC 4 cut(s) 295, 354, 425, 712
BshVI ATCGAT 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 476
BsiWI CGTACG 1 cut(s) 563
BslFI GGGAC 2 cut(s) 273, 533
BslI CCNNNNNNNGG 3 cut(s) 256, 338, 685
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 273, 533
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 4 cut(s) 295, 354, 425, 712
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 4 cut(s) 133, 365, 499, 559
Bsp19I CCATGG 3 cut(s) 427, 455, 467
BspACI CCGC 2 cut(s) 163, 338
BspANI GGCC 4 cut(s) 295, 354, 425, 712
BspCNI CTCAG 1 cut(s) 69
BspDI ATCGAT 1 cut(s) 23
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 2 cut(s) 68, 165
BspHI TCATGA 2 cut(s) 508, 654
BspLI GGNNCC 1 cut(s) 690
BspPI GGATC 3 cut(s) 373, 494, 567
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 4 cut(s) 367, 579, 679, 699
BssECI CCNNGG 6 cut(s) 255, 290, 427, 455, 467, 713
BssMI GATC 4 cut(s) 133, 365, 499, 559
BssT1I CCWWGG 4 cut(s) 255, 427, 455, 467
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 636
Bst6I CTCTTC 3 cut(s) 148, 192, 420
BstBAI YACGTR 2 cut(s) 335, 567
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 4 cut(s) 427, 455, 467, 713
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 2 cut(s) 68, 165
BstHHI GCGC 2 cut(s) 70, 95
BstKTI GATC 4 cut(s) 136, 368, 502, 562
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 4 cut(s) 133, 365, 499, 559
BstMWI GCNNNNNNNGC 3 cut(s) 344, 621, 709
BstNI CCWGG 1 cut(s) 292
BstNSI RCATGY 2 cut(s) 486, 624
BstSCI CCNGG 1 cut(s) 290
BstSNI TACGTA 1 cut(s) 567
BstUI CGCG 2 cut(s) 68, 165
BstV1I GCAGC 2 cut(s) 82, 220
BstXI CCANNNNNNTGG 2 cut(s) 298, 646
Bsu15I ATCGAT 1 cut(s) 23
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 4 cut(s) 295, 354, 425, 712
BsuTUI ATCGAT 1 cut(s) 23
BtgI CCRYGG 4 cut(s) 427, 455, 467, 713
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 2 cut(s) 524, 692
Cac8I GCNNGC 1 cut(s) 484
CciI TCATGA 2 cut(s) 508, 654
CfoI GCGC 2 cut(s) 70, 95
Cfr13I GGNCC 4 cut(s) 83, 206, 424, 710
ClaI ATCGAT 1 cut(s) 23
Csp6I GTAC 5 cut(s) 110, 228, 266, 411, 564
CviAII CATG 7 cut(s) 428, 456, 468, 483, 509, 621, 655
CviQI GTAC 5 cut(s) 110, 228, 266, 411, 564
DdeI CTNAG 1 cut(s) 77
DpnI GATC 4 cut(s) 135, 367, 501, 561
DpnII GATC 4 cut(s) 133, 365, 499, 559
Eam1104I CTCTTC 3 cut(s) 148, 192, 420
EarI CTCTTC 3 cut(s) 148, 192, 420
Eco105I TACGTA 1 cut(s) 567
Eco130I CCWWGG 4 cut(s) 255, 427, 455, 467
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 83, 206
Eco72I CACGTG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 290
EcoT14I CCWWGG 4 cut(s) 255, 427, 455, 467
ErhI CCWWGG 4 cut(s) 255, 427, 455, 467
FaeI CATG 7 cut(s) 431, 459, 471, 486, 512, 624, 658
FaqI GGGAC 2 cut(s) 273, 533
FatI CATG 7 cut(s) 427, 455, 467, 482, 508, 620, 654
FauI CCCGC 2 cut(s) 170, 331
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 96, 234
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 96, 234
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 69, 94
GluI GCNGC 2 cut(s) 96, 234
GsaI CCCAGC 1 cut(s) 707
HaeIII GGCC 4 cut(s) 295, 354, 425, 712
HapII CCGG 1 cut(s) 476
HhaI GCGC 2 cut(s) 70, 95
Hin1II CATG 7 cut(s) 431, 459, 471, 486, 512, 624, 658
Hin6I GCGC 2 cut(s) 68, 93
HinP1I GCGC 2 cut(s) 68, 93
HinfI GANTC 2 cut(s) 156, 472
HpaII CCGG 1 cut(s) 476
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 6 cut(s) 44, 209, 272, 476, 509, 655
Hpy8I GTNNAC 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 636
HpyCH4IV ACGT 2 cut(s) 334, 566
HpyCH4V TGCA 2 cut(s) 98, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 621, 709
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 334, 566
Hsp92II CATG 7 cut(s) 431, 459, 471, 486, 512, 624, 658
HspAI GCGC 2 cut(s) 68, 93
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 4 cut(s) 133, 365, 499, 559
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 82, 220
LweI GCATC 1 cut(s) 602
MaeI CTAG 1 cut(s) 272
MaeII ACGT 2 cut(s) 334, 566
MaeIII GTNAC 2 cut(s) 157, 589
MalI GATC 4 cut(s) 135, 367, 501, 561
MboI GATC 4 cut(s) 133, 365, 499, 559
MboII GAAGA 3 cut(s) 165, 179, 407
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 2 cut(s) 377, 396
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 663
MnlI CCTC 7 cut(s) 140, 143, 195, 268, 295, 541, 701
MroI TCCGGA 1 cut(s) 475
MseI TTAA 2 cut(s) 399, 683
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 1 cut(s) 292
Mva1269I GAATGC 1 cut(s) 98
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 2 cut(s) 68, 165
MwoI GCNNNNNNNGC 3 cut(s) 344, 621, 709
NcoI CCATGG 3 cut(s) 427, 455, 467
NdeII GATC 4 cut(s) 133, 365, 499, 559
NlaIII CATG 7 cut(s) 431, 459, 471, 486, 512, 624, 658
NlaIV GGNNCC 1 cut(s) 690
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 2 cut(s) 486, 624
PaeI GCATGC 1 cut(s) 486
PagI TCATGA 2 cut(s) 508, 654
PcsI WCGNNNNNNNCGW 1 cut(s) 559
PctI GAATGC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 472
Pfl23II CGTACG 1 cut(s) 563
PkrI GCNGC 2 cut(s) 97, 235
PleI GAGTC 1 cut(s) 164
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
PpsI GAGTC 1 cut(s) 164
Ppu21I YACGTR 2 cut(s) 335, 567
Psp6I CCWGG 1 cut(s) 290
PspCI CACGTG 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 290
PspLI CGTACG 1 cut(s) 563
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 4 cut(s) 83, 206, 424, 710
RsaI GTAC 5 cut(s) 111, 229, 267, 412, 565
RsaNI GTAC 5 cut(s) 110, 228, 266, 411, 564
SaqAI TTAA 2 cut(s) 399, 683
SatI GCNGC 2 cut(s) 96, 234
Sau3AI GATC 4 cut(s) 133, 365, 499, 559
Sau96I GGNCC 4 cut(s) 83, 206, 424, 710
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 292
SduI GDGCHC 1 cut(s) 180
SetI ASST 6 cut(s) 53, 187, 261, 337, 569, 690
SfaNI GCATC 1 cut(s) 602
SinI GGWCC 2 cut(s) 83, 206
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SnaBI TACGTA 1 cut(s) 567
SphI GCATGC 1 cut(s) 486
Sse9I AATT 2 cut(s) 377, 396
SsiI CCGC 2 cut(s) 163, 338
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 290
StyI CCWWGG 4 cut(s) 255, 427, 455, 467
TaaI ACNGT 1 cut(s) 636
TaiI ACGT 2 cut(s) 337, 569
TaqI TCGA 2 cut(s) 23, 610
TasI AATT 2 cut(s) 377, 396
TatI WGTACW 3 cut(s) 109, 227, 265
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 2 cut(s) 399, 683
Tru9I TTAA 2 cut(s) 399, 683
TscAI CASTG 2 cut(s) 531, 699
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 2 cut(s) 95, 233
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 9, 683
TspRI CASTG 2 cut(s) 531, 699
VpaK11BI GGWCC 2 cut(s) 83, 206
XapI RAATTY 1 cut(s) 377
XbaI TCTAGA 1 cut(s) 271
XceI RCATGY 2 cut(s) 486, 624
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.