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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1267 |
| AciI | CCGC | 1 cut(s) | 1267 |
| AclWI | GGATC | 4 cut(s) | 482, 884, 897, 1169 |
| AcoI | YGGCCR | 1 cut(s) | 471 |
| AcsI | RAATTY | 2 cut(s) | 174, 194 |
| AfaI | GTAC | 3 cut(s) | 836, 874, 1042 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 16, 38, 504, 1319 |
| AflIII | ACRYGT | 2 cut(s) | 620, 985 |
| AgsI | TTSAA | 6 cut(s) | 79, 277, 388, 1100, 1196, 1297 |
| AjiI | CACGTC | 1 cut(s) | 658 |
| AjnI | CCWGG | 3 cut(s) | 14, 269, 503 |
| AluBI | AGCT | 9 cut(s) | 22, 53, 217, 451, 555, 737, 859, 1077, 1192 |
| AluI | AGCT | 9 cut(s) | 22, 53, 217, 451, 555, 737, 859, 1077, 1192 |
| Alw21I | GWGCWC | 1 cut(s) | 24 |
| Alw26I | GTCTC | 2 cut(s) | 611, 1234 |
| AlwI | GGATC | 4 cut(s) | 482, 884, 897, 1169 |
| AoxI | GGCC | 2 cut(s) | 471, 495 |
| ApeKI | GCWGC | 3 cut(s) | 409, 859, 1162 |
| ApoI | RAATTY | 2 cut(s) | 174, 194 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 329, 392, 971 |
| AsuHPI | GGTGA | 1 cut(s) | 988 |
| BamHI | GGATCC | 1 cut(s) | 889 |
| BanII | GRGCYC | 2 cut(s) | 24, 402 |
| BbsI | GAAGAC | 1 cut(s) | 1240 |
| Bbv12I | GWGCWC | 1 cut(s) | 24 |
| BbvI | GCAGC | 3 cut(s) | 421, 846, 1174 |
| BccI | CCATC | 1 cut(s) | 815 |
| BceAI | ACGGC | 2 cut(s) | 458, 601 |
| BciT130I | CCWGG | 3 cut(s) | 16, 271, 505 |
| BciVI | GTATCC | 1 cut(s) | 1046 |
| BcoDI | GTCTC | 2 cut(s) | 611, 1234 |
| BfaI | CTAG | 4 cut(s) | 552, 558, 1046, 1115 |
| BfmI | CTRYAG | 2 cut(s) | 603, 738 |
| BfuI | GTATCC | 1 cut(s) | 1046 |
| BglII | AGATCT | 1 cut(s) | 767 |
| BisI | GCNGC | 3 cut(s) | 410, 860, 1163 |
| BlsI | GCNGC | 3 cut(s) | 411, 861, 1164 |
| BmcAI | AGTACT | 1 cut(s) | 836 |
| Bme1390I | CCNGG | 3 cut(s) | 16, 271, 505 |
| BmgBI | CACGTC | 1 cut(s) | 658 |
| BmiI | GGNNCC | 1 cut(s) | 891 |
| BmrFI | CCNGG | 3 cut(s) | 16, 271, 505 |
| BmsI | GCATC | 2 cut(s) | 412, 1149 |
| BpiI | GAAGAC | 1 cut(s) | 1240 |
| Bpu10I | CCTNAGC | 2 cut(s) | 23, 405 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 1 cut(s) | 15 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 533, 563 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 16, 38, 504, 1319 |
| Bse3DI | GCAATG | 1 cut(s) | 95 |
| BseBI | CCWGG | 3 cut(s) | 16, 271, 505 |
| BseDI | CCNNGG | 1 cut(s) | 15 |
| BseGI | GGATG | 2 cut(s) | 567, 673 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 16, 38, 504, 1319 |
| BseMI | GCAATG | 1 cut(s) | 95 |
| BseMII | CTCAG | 3 cut(s) | 37, 63, 606 |
| BseRI | GAGGAG | 2 cut(s) | 554, 630 |
| BseX3I | CGGCCG | 1 cut(s) | 471 |
| BseXI | GCAGC | 3 cut(s) | 421, 846, 1174 |
| BseYI | CCCAGC | 1 cut(s) | 244 |
| Bsh1236I | CGCG | 1 cut(s) | 1267 |
| Bsh1285I | CGRYCG | 1 cut(s) | 474 |
| BshFI | GGCC | 2 cut(s) | 473, 497 |
| BsiEI | CGRYCG | 1 cut(s) | 474 |
| BsiHKAI | GWGCWC | 1 cut(s) | 24 |
| BslFI | GGGAC | 2 cut(s) | 227, 674 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 16, 38, 504, 1319 |
| BsmAI | GTCTC | 2 cut(s) | 611, 1234 |
| BsmFI | GGGAC | 2 cut(s) | 227, 674 |
| BsmI | GAATGC | 1 cut(s) | 791 |
| BsnI | GGCC | 2 cut(s) | 473, 497 |
| Bsp1286I | GDGCHC | 2 cut(s) | 24, 402 |
| Bsp143I | GATC | 5 cut(s) | 34, 487, 767, 889, 1174 |
| BspACI | CCGC | 1 cut(s) | 1267 |
| BspANI | GGCC | 2 cut(s) | 473, 497 |
| BspCNI | CTCAG | 3 cut(s) | 36, 62, 607 |
| BspFNI | CGCG | 1 cut(s) | 1267 |
| BspLI | GGNNCC | 1 cut(s) | 891 |
| BspPI | GGATC | 4 cut(s) | 482, 884, 897, 1169 |
| BspQI | GCTCTTC | 1 cut(s) | 523 |
| BsrDI | GCAATG | 1 cut(s) | 95 |
| BssECI | CCNNGG | 1 cut(s) | 15 |
| BssMI | GATC | 5 cut(s) | 34, 487, 767, 889, 1174 |
| Bst2UI | CCWGG | 3 cut(s) | 16, 271, 505 |
| Bst4CI | ACNGT | 2 cut(s) | 236, 784 |
| Bst6I | CTCTTC | 2 cut(s) | 503, 523 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 868 |
| BstC8I | GCNNGC | 7 cut(s) | 55, 141, 338, 358, 499, 869, 1190 |
| BstDEI | CTNAG | 5 cut(s) | 23, 49, 378, 405, 615 |
| BstF5I | GGATG | 2 cut(s) | 567, 673 |
| BstFNI | CGCG | 1 cut(s) | 1267 |
| BstKTI | GATC | 5 cut(s) | 37, 490, 770, 892, 1177 |
| BstMAI | GTCTC | 2 cut(s) | 611, 1234 |
| BstMBI | GATC | 5 cut(s) | 34, 487, 767, 889, 1174 |
| BstMCI | CGRYCG | 1 cut(s) | 474 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 63, 406, 470, 868 |
| BstNI | CCWGG | 3 cut(s) | 16, 271, 505 |
| BstNSI | RCATGY | 3 cut(s) | 143, 360, 624 |
| BstSCI | CCNGG | 3 cut(s) | 14, 269, 503 |
| BstSFI | CTRYAG | 2 cut(s) | 603, 738 |
| BstUI | CGCG | 1 cut(s) | 1267 |
| BstV1I | GCAGC | 3 cut(s) | 421, 846, 1174 |
| BstV2I | GAAGAC | 1 cut(s) | 1240 |
| BstX2I | RGATCY | 2 cut(s) | 767, 889 |
| BstYI | RGATCY | 2 cut(s) | 767, 889 |
| BstZI | CGGCCG | 1 cut(s) | 471 |
| BsuI | GTATCC | 1 cut(s) | 1046 |
| BsuRI | GGCC | 2 cut(s) | 473, 497 |
| BtrI | CACGTC | 1 cut(s) | 658 |
| BtsCI | GGATG | 2 cut(s) | 567, 673 |
| Cac8I | GCNNGC | 7 cut(s) | 55, 141, 338, 358, 499, 869, 1190 |
| CseI | GACGC | 1 cut(s) | 617 |
| CsiI | ACCWGGT | 1 cut(s) | 269 |
| Csp6I | GTAC | 3 cut(s) | 835, 873, 1041 |
| CviAII | CATG | 6 cut(s) | 38, 140, 357, 621, 863, 1057 |
| CviQI | GTAC | 3 cut(s) | 835, 873, 1041 |
| DdeI | CTNAG | 5 cut(s) | 23, 49, 378, 405, 615 |
| DpnI | GATC | 5 cut(s) | 36, 489, 769, 891, 1176 |
| DpnII | GATC | 5 cut(s) | 34, 487, 767, 889, 1174 |
| EaeI | YGGCCR | 1 cut(s) | 471 |
| EagI | CGGCCG | 1 cut(s) | 471 |
| Eam1104I | CTCTTC | 2 cut(s) | 503, 523 |
| EarI | CTCTTC | 2 cut(s) | 503, 523 |
| Ecl136II | GAGCTC | 1 cut(s) | 22 |
| EclXI | CGGCCG | 1 cut(s) | 471 |
| Eco147I | AGGCCT | 1 cut(s) | 497 |
| Eco24I | GRGCYC | 2 cut(s) | 24, 402 |
| Eco52I | CGGCCG | 1 cut(s) | 471 |
| Eco53kI | GAGCTC | 1 cut(s) | 22 |
| EcoICRI | GAGCTC | 1 cut(s) | 22 |
| EcoRII | CCWGG | 3 cut(s) | 14, 269, 503 |
| EcoT38I | GRGCYC | 2 cut(s) | 24, 402 |
| FaeI | CATG | 6 cut(s) | 41, 143, 360, 624, 866, 1060 |
| FaqI | GGGAC | 2 cut(s) | 227, 674 |
| FatI | CATG | 6 cut(s) | 37, 139, 356, 620, 862, 1056 |
| Fnu4HI | GCNGC | 3 cut(s) | 410, 860, 1163 |
| FokI | GGATG | 2 cut(s) | 574, 680 |
| FriOI | GRGCYC | 2 cut(s) | 24, 402 |
| Fsp4HI | GCNGC | 3 cut(s) | 410, 860, 1163 |
| FspBI | CTAG | 4 cut(s) | 552, 558, 1046, 1115 |
| GluI | GCNGC | 3 cut(s) | 410, 860, 1163 |
| GsaI | CCCAGC | 1 cut(s) | 248 |
| HaeIII | GGCC | 2 cut(s) | 473, 497 |
| HgaI | GACGC | 1 cut(s) | 617 |
| Hin1II | CATG | 6 cut(s) | 41, 143, 360, 624, 866, 1060 |
| HindIII | AAGCTT | 3 cut(s) | 215, 449, 1190 |
| HinfI | GANTC | 3 cut(s) | 635, 704, 1100 |
| HphI | GGTGA | 1 cut(s) | 988 |
| Hpy166II | GTNNAC | 2 cut(s) | 844, 1327 |
| Hpy188I | TCNGA | 1 cut(s) | 709 |
| Hpy8I | GTNNAC | 2 cut(s) | 844, 1327 |
| Hpy99I | CGWCG | 2 cut(s) | 633, 701 |
| HpyAV | CCTTC | 4 cut(s) | 73, 340, 1016, 1121 |
| HpyCH4III | ACNGT | 2 cut(s) | 236, 784 |
| HpyCH4IV | ACGT | 2 cut(s) | 657, 985 |
| HpyCH4V | TGCA | 7 cut(s) | 93, 360, 425, 862, 955, 1162, 1188 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 63, 406, 470, 868 |
| HpyF3I | CTNAG | 5 cut(s) | 23, 49, 378, 405, 615 |
| HpySE526I | ACGT | 2 cut(s) | 657, 985 |
| Hsp92II | CATG | 6 cut(s) | 41, 143, 360, 624, 866, 1060 |
| Kzo9I | GATC | 5 cut(s) | 34, 487, 767, 889, 1174 |
| LguI | GCTCTTC | 1 cut(s) | 523 |
| LmnI | GCTCC | 2 cut(s) | 19, 506 |
| Lsp1109I | GCAGC | 3 cut(s) | 421, 846, 1174 |
| LweI | GCATC | 2 cut(s) | 412, 1149 |
| MabI | ACCWGGT | 1 cut(s) | 269 |
| MaeI | CTAG | 4 cut(s) | 552, 558, 1046, 1115 |
| MaeII | ACGT | 2 cut(s) | 657, 985 |
| MaeIII | GTNAC | 3 cut(s) | 230, 581, 658 |
| MalI | GATC | 5 cut(s) | 36, 489, 769, 891, 1176 |
| MboI | GATC | 5 cut(s) | 34, 487, 767, 889, 1174 |
| MboII | GAAGA | 4 cut(s) | 510, 520, 1136, 1245 |
| MflI | RGATCY | 2 cut(s) | 767, 889 |
| MhlI | GDGCHC | 2 cut(s) | 24, 402 |
| MluCI | AATT | 7 cut(s) | 58, 174, 194, 290, 383, 432, 1088 |
| MroXI | GAANNNNTTC | 3 cut(s) | 329, 392, 971 |
| MseI | TTAA | 3 cut(s) | 431, 684, 939 |
| MslI | CAYNNNNRTG | 1 cut(s) | 138 |
| MspR9I | CCNGG | 3 cut(s) | 16, 271, 505 |
| Mva1269I | GAATGC | 1 cut(s) | 791 |
| MvaI | CCWGG | 3 cut(s) | 16, 271, 505 |
| MvnI | CGCG | 1 cut(s) | 1267 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 63, 406, 470, 868 |
| NdeII | GATC | 5 cut(s) | 34, 487, 767, 889, 1174 |
| NlaIII | CATG | 6 cut(s) | 41, 143, 360, 624, 866, 1060 |
| NlaIV | GGNNCC | 1 cut(s) | 891 |
| NmeAIII | GCCGAG | 1 cut(s) | 332 |
| NmuCI | GTSAC | 1 cut(s) | 658 |
| NspI | RCATGY | 3 cut(s) | 143, 360, 624 |
| PaeI | GCATGC | 2 cut(s) | 143, 360 |
| PceI | AGGCCT | 1 cut(s) | 497 |
| PciI | ACATGT | 1 cut(s) | 620 |
| PciSI | GCTCTTC | 1 cut(s) | 523 |
| PctI | GAATGC | 1 cut(s) | 791 |
| PdmI | GAANNNNTTC | 3 cut(s) | 329, 392, 971 |
| PfeI | GAWTC | 3 cut(s) | 635, 704, 1100 |
| PfoI | TCCNGGA | 1 cut(s) | 503 |
| PkrI | GCNGC | 3 cut(s) | 411, 861, 1164 |
| PscI | ACATGT | 1 cut(s) | 620 |
| Psp124BI | GAGCTC | 1 cut(s) | 24 |
| Psp6I | CCWGG | 3 cut(s) | 14, 269, 503 |
| PspFI | CCCAGC | 1 cut(s) | 244 |
| PspGI | CCWGG | 3 cut(s) | 14, 269, 503 |
| PspN4I | GGNNCC | 1 cut(s) | 891 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 287, 319 |
| PsuI | RGATCY | 2 cut(s) | 767, 889 |
| RsaI | GTAC | 3 cut(s) | 836, 874, 1042 |
| RsaNI | GTAC | 3 cut(s) | 835, 873, 1041 |
| RseI | CAYNNNNRTG | 1 cut(s) | 138 |
| SacI | GAGCTC | 1 cut(s) | 24 |
| SapI | GCTCTTC | 1 cut(s) | 523 |
| SaqAI | TTAA | 3 cut(s) | 431, 684, 939 |
| SatI | GCNGC | 3 cut(s) | 410, 860, 1163 |
| Sau3AI | GATC | 5 cut(s) | 34, 487, 767, 889, 1174 |
| ScaI | AGTACT | 1 cut(s) | 836 |
| ScrFI | CCNGG | 3 cut(s) | 16, 271, 505 |
| SduI | GDGCHC | 2 cut(s) | 24, 402 |
| SexAI | ACCWGGT | 1 cut(s) | 269 |
| SfaNI | GCATC | 2 cut(s) | 412, 1149 |
| SfcI | CTRYAG | 2 cut(s) | 603, 738 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 138 |
| SmlI | CTYRAG | 1 cut(s) | 200 |
| SmoI | CTYRAG | 1 cut(s) | 200 |
| SphI | GCATGC | 2 cut(s) | 143, 360 |
| Sse9I | AATT | 7 cut(s) | 58, 174, 194, 290, 383, 432, 1088 |
| SseBI | AGGCCT | 1 cut(s) | 497 |
| SsiI | CCGC | 1 cut(s) | 1267 |
| SspI | AATATT | 1 cut(s) | 971 |
| SspMI | CTAG | 4 cut(s) | 552, 558, 1046, 1115 |
| SstI | GAGCTC | 1 cut(s) | 24 |
| StuI | AGGCCT | 1 cut(s) | 497 |
| StyD4I | CCNGG | 3 cut(s) | 14, 269, 503 |
| TaaI | ACNGT | 2 cut(s) | 236, 784 |
| TaiI | ACGT | 2 cut(s) | 660, 988 |
| TaqI | TCGA | 8 cut(s) | 113, 190, 222, 396, 975, 1180, 1253, 1306 |
| TasI | AATT | 7 cut(s) | 58, 174, 194, 290, 383, 432, 1088 |
| TatI | WGTACW | 1 cut(s) | 834 |
| TfiI | GAWTC | 3 cut(s) | 635, 704, 1100 |
| Tru1I | TTAA | 3 cut(s) | 431, 684, 939 |
| Tru9I | TTAA | 3 cut(s) | 431, 684, 939 |
| TseFI | GTSAC | 1 cut(s) | 658 |
| TseI | GCWGC | 3 cut(s) | 409, 859, 1162 |
| Tsp45I | GTSAC | 1 cut(s) | 658 |
| TspDTI | ATGAA | 7 cut(s) | 330, 510, 684, 704, 914, 982, 1262 |
| TspGWI | ACGGA | 2 cut(s) | 1028, 1252 |
| XapI | RAATTY | 2 cut(s) | 174, 194 |
| XbaI | TCTAGA | 1 cut(s) | 1045 |
| XceI | RCATGY | 3 cut(s) | 143, 360, 624 |
| XmnI | GAANNNNTTC | 3 cut(s) | 329, 392, 971 |
| XspI | CTAG | 4 cut(s) | 552, 558, 1046, 1115 |
| ZrmI | AGTACT | 1 cut(s) | 836 |