Rh7BG284500

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000150
Physical Location & Seq
Reverse (-)
26742135 .. 26745821
3687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG284500.1

Sequence Viewer

Length: 2271 bp
ATGGAAGTGTGTTTCCCCAAATGCAGTGGACATATTTTCGACATCAAGACTAGGAAAGTGGTGTCATCATTGAAACCCCCAGCTCCCAAATGGTTTGGAACTCATGTGTCTGCATATGGGAAAATTTACTCTCTTTCAGATCCATATTGCTCATGTGATGTACCAGAGCCGTCTTTTGAGCAGTATGACCCTAGCACTCAGTCTTGGCAGAAGCTGTGCTCTTTTCCATATTCTGAGGAATATGGTAATACAGAGATACAGGGTTATGCTGTTTGTGGTGAAATCTTATTGTTTAGTATATGCGGCTGTAAGGAAAACTATGATGCACTGTGGGCTTATGATGTTATTAAAAATAAGTGGTGTCCAGTCCAAGTTGAGAATCTAGGCTGCTATTTCCGAAGAAGGGCCGTGGTTGTGGACAAGACTATCTATGCCTTATCCATATTGCACATGGTTGCTGTGGCATTCTCTATTACGAGCAACCAAAATGAGGAAGGGCATATTAGCTATTCAATAGGCTCATTGTTACAGTTGGATTTTCCACAGGATATAGACTGGAGAAGTGATCAGCATTTGGTTCATTTGGGTAACCTGGTCTTTTATCTTGTCCAGAGTGACGAAGTTGATGTTCGCCAACCTCTTTCGATCACCAAATTTAAGATTGTGGGAGGAAGCAAAATCAATATCATAAGTTCAATGCTTTTTGAGGTGGATCTCGGGGATTCTGGGCCATTCCGTGTTCAATTATGCGTCACACCAGAGTGGGAGGATGTCACGCTCATAGAAGAAGAGATTGCTACCTCCGTCAACCTGGCAAAACAAGTTTCCGAGCTGCACCAAGTAATTCCAGTTCCTTACCAAGCTGGAATCACCCCTCTGCCTGCACATGAAGCATGTTCCTCATCTCAGCCACCTGAGCCTTCAGAAGTGGCAGAACAGTTTCAGCATGTTTCCATCCAGCAAGAGGAAGCACCTAGTCAGTCCATTCAACAAGTGTCAGTCTCTAGCAAGTCTATGATGTTCGCTCTTCGCCCTGGTAAGGGTACGACTGGCAAAAGGTTTCTAGTCAAGGCAAACCATTTCTTTGCTGAATTAACAGACAAGGATCTGCACCAATATGATGTTACTATTACACCAGCTGCAGGAGTCACATCACGCAGTGAAAACCGTGCTGTGATGTTTCAGCTAGTGAAACTCTACAGGGACTCCCATCTTTCAAAGCGGCTTCCTGCTTATGATGGGCAGAAGAGCCTGTATACTACTGGGCCTCTTCCTTTCCAGTCAAAGGAGTTTAAAATCACTCTTCTGGATGATGATGGTGAGGGACAGGGACTCCCATCTTTCAAACGGCAGAGGGAGTTCGGAGTTGTGATCAAATTCGCTGCACGTGTTGACCTGCACGATTTAGTTCTCTTTTTGCAAGGGAGGAAAGCTGATGCACCCGAGAAGGCCCTTCAGGTTCTGAACATTGTTATGAGAGAGTTGCCTACTTCTAGGTACTGTCGTGTGGGTCAGTCATTTTATGACCCTGGCTTGGGGAGAAAACTGCCACTTGGTAACGGTTTAGAAAGCTGGCATGGTTTTCACCAGAGAATTCGTCCAACTCAAATGGGGCTATCTTTAAACATTAATATGTCATCGACATTTTTTATTGAGCCATTGCCAGTTATAGAGTTTGTAATCAAGCTACTGGATTGCAATATTCAAGCTAAGCAACTTTCTGATTCTGATCGTGTAAAGATTAAAAAGGCTCTACGTGGAGTGAAGGTTGAAGTTACACACCGCAGAAACATGCGCAGAAAATACCGTATTTCTGGTTTAACGGCCCAGGAAACAAGAGAATTGACTTTTCCTATTGATGAAAGAGGAACAATGAAATCTGTTGTTGAATACTTTCTTGAAACCTACGGTTTTGCCATTCAATATCCATATTTGCCTTGTCTTCAAGTTGGAAATCAACAACGACCGCACTATTTACCCATGGAGGTCTGTAAAATTGTTAAGGGACAAAGGTGCTCAAGGATATTGAATGAGAGACAGAAAATTGCATTGCTCAAGGTGAGTGCTCCGCGCCCTTTTAAAAAGGAACGTGATATTACACAGGTTAGTTATCTTTTCTCTTTGCTCCCTCTCCCTCCCTTGAAAATCAGTTCATCATATCTAAAATACAAGATTCAAAACAAATCTTGGAAGTTACTACTGCACGACATCATGTACACTACCAATTCAAGCCCCAACATTCAAATTCCAATGCATAAAAACCTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

756

Amino Acids

85.91

Weight (kDa)

8.67

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly-rich_Ago1 PF12764 272 - 332 1.6e-09 Glycine-rich region of argonaut
ArgoN PF16486 353 - 492 1.9e-30 N-terminal domain of argonaute
ArgoL1 PF08699 503 - 552 3e-15 Argonaute linker 1 domain
PAZ PF02170 577 - 683 3.5e-28 PAZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1796
Acc36I ACCTGC 1 cut(s) 1404
AccI GTMKAC 1 cut(s) 1256
AccII CGCG 1 cut(s) 2071
AciI CCGC 5 cut(s) 303, 1222, 1783, 1967, 2069
AclWI GGATC 3 cut(s) 134, 720, 1113
AcsI RAATTY 5 cut(s) 123, 653, 1376, 1593, 2244
AcuI CTGAAG 2 cut(s) 906, 1439
AcvI CACGTG 1 cut(s) 1388
AdeI CACNNNGTG 1 cut(s) 1160
AfaI GTAC 4 cut(s) 162, 1045, 1499, 2216
AfiI CCNNNNNNNGG 9 cut(s) 403, 490, 964, 1039, 1040, 1142, 1285, 1534, 1535
AflIII ACRYGT 1 cut(s) 1387
AjnI CCWGG 5 cut(s) 591, 810, 1033, 1528, 1827
AleI CACNNNNGTG 1 cut(s) 760
Alw21I GWGCWC 3 cut(s) 221, 2018, 2068
Alw26I GTCTC 2 cut(s) 1006, 2029
AlwI GGATC 3 cut(s) 134, 720, 1113
AlwNI CAGNNNCTG 2 cut(s) 214, 1462
Ama87I CYCGRG 2 cut(s) 716, 1442
AoxI GGCC 5 cut(s) 405, 728, 1265, 1449, 1824
ApeKI GCWGC 4 cut(s) 387, 832, 1139, 1382
ApoI RAATTY 5 cut(s) 123, 653, 1376, 1593, 2244
AseI ATTAAT 1 cut(s) 1629
Asp700I GAANNNNTTC 2 cut(s) 939, 1893
AspLEI GCGC 2 cut(s) 1797, 2073
AspS9I GGNCC 5 cut(s) 405, 728, 1265, 1450, 1825
AsuHPI GGTGA 6 cut(s) 290, 640, 862, 1331, 1577, 2071
AvaI CYCGRG 2 cut(s) 716, 1442
BaeI ACNNNNGTAYC 2 cut(s) 1489, 1522
BbrPI CACGTG 1 cut(s) 1388
BbsI GAAGAC 1 cut(s) 1934
Bbv12I GWGCWC 3 cut(s) 221, 2018, 2068
BbvI GCAGC 4 cut(s) 374, 819, 1126, 1369
BccI CCATC 5 cut(s) 962, 1218, 1232, 1310, 1345
BceAI ACGGC 4 cut(s) 154, 392, 1364, 1839
BciT130I CCWGG 5 cut(s) 593, 812, 1035, 1530, 1829
BclI TGATCA 2 cut(s) 565, 1371
BcoDI GTCTC 2 cut(s) 1006, 2029
BfaI CTAG 8 cut(s) 51, 192, 383, 975, 1005, 1064, 1187, 1494
BfmI CTRYAG 2 cut(s) 1140, 1198
BfuAI ACCTGC 1 cut(s) 1404
BisI GCNGC 6 cut(s) 304, 388, 833, 1140, 1223, 1383
BlpI GCTNAGC 1 cut(s) 1710
BlsI GCNGC 6 cut(s) 305, 389, 834, 1141, 1224, 1384
Bme1390I CCNGG 5 cut(s) 593, 812, 1035, 1530, 1829
BmeT110I CYCGRG 2 cut(s) 716, 1442
BmgT120I GGNCC 5 cut(s) 405, 728, 1265, 1450, 1825
BmrFI CCNGG 5 cut(s) 593, 812, 1035, 1530, 1829
BmrI ACTGGG 1 cut(s) 1272
BmsI GCATC 2 cut(s) 313, 1426
BmuI ACTGGG 1 cut(s) 1272
BpiI GAAGAC 1 cut(s) 1934
BpmI CTGGAG 1 cut(s) 577
Bpu10I CCTNAGC 1 cut(s) 915
Bpu1102I GCTNAGC 1 cut(s) 1710
BpuEI CTTGAG 2 cut(s) 2002, 2039
BsaAI YACGTR 2 cut(s) 1388, 1757
BsaBI GATNNNNATC 1 cut(s) 1728
BsaJI CCNNGG 5 cut(s) 408, 1033, 1528, 1827, 1980
BsaXI ACNNNNNCTCC 6 cut(s) 1190, 1220, 1317, 1347, 1752, 1782
Bsc4I CCNNNNNNNGG 9 cut(s) 403, 490, 964, 1039, 1040, 1142, 1285, 1534, 1535
Bse1I ACTGG 8 cut(s) 365, 560, 848, 1054, 1267, 1279, 1664, 1695
Bse3DI GCAATG 2 cut(s) 1658, 2048
Bse8I GATNNNNATC 1 cut(s) 1728
BseBI CCWGG 5 cut(s) 593, 812, 1035, 1530, 1829
BseDI CCNNGG 5 cut(s) 408, 1033, 1528, 1827, 1980
BseGI GGATG 3 cut(s) 775, 954, 1315
BseJI GATNNNNATC 1 cut(s) 1728
BseLI CCNNNNNNNGG 9 cut(s) 403, 490, 964, 1039, 1040, 1142, 1285, 1534, 1535
BseMI GCAATG 2 cut(s) 1658, 2048
BseMII CTCAG 4 cut(s) 212, 225, 906, 920
BseNI ACTGG 8 cut(s) 365, 560, 848, 1054, 1267, 1279, 1664, 1695
BseXI GCAGC 4 cut(s) 374, 819, 1126, 1369
BseYI CCCAGC 1 cut(s) 79
BsgI GTGCAG 6 cut(s) 818, 867, 1094, 1368, 1382, 2186
Bsh1236I CGCG 1 cut(s) 2071
Bsh1285I CGRYCG 1 cut(s) 1967
BshFI GGCC 5 cut(s) 407, 730, 1267, 1451, 1826
BsiEI CGRYCG 1 cut(s) 1967
BsiHKAI GWGCWC 3 cut(s) 221, 2018, 2068
BsiHKCI CYCGRG 2 cut(s) 716, 1442
BslFI GGGAC 4 cut(s) 1217, 1338, 1344, 2019
BslI CCNNNNNNNGG 9 cut(s) 403, 490, 964, 1039, 1040, 1142, 1285, 1534, 1535
BsmAI GTCTC 2 cut(s) 1006, 2029
BsmFI GGGAC 4 cut(s) 1217, 1338, 1344, 2019
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 5 cut(s) 407, 730, 1267, 1451, 1826
BsoBI CYCGRG 2 cut(s) 716, 1442
Bsp1286I GDGCHC 3 cut(s) 221, 2018, 2068
Bsp1407I TGTACA 1 cut(s) 2214
Bsp143I GATC 7 cut(s) 139, 565, 645, 712, 1105, 1371, 1729
Bsp1720I GCTNAGC 1 cut(s) 1710
Bsp19I CCATGG 1 cut(s) 1980
BspACI CCGC 5 cut(s) 303, 1222, 1783, 1967, 2069
BspANI GGCC 5 cut(s) 407, 730, 1267, 1451, 1826
BspCNI CTCAG 4 cut(s) 211, 226, 907, 919
BspFNI CGCG 1 cut(s) 2071
BspMAI CTGCAG 1 cut(s) 1144
BspMI ACCTGC 1 cut(s) 1404
BspPI GGATC 3 cut(s) 134, 720, 1113
BspQI GCTCTTC 2 cut(s) 1032, 1241
BsrDI GCAATG 2 cut(s) 1658, 2048
BsrGI TGTACA 1 cut(s) 2214
BsrI ACTGG 8 cut(s) 365, 560, 848, 1054, 1267, 1279, 1664, 1695
BssECI CCNNGG 5 cut(s) 408, 1033, 1528, 1827, 1980
BssMI GATC 7 cut(s) 139, 565, 645, 712, 1105, 1371, 1729
BssNAI GTATAC 1 cut(s) 1257
BssT1I CCWWGG 1 cut(s) 1980
Bst1107I GTATAC 1 cut(s) 1257
Bst2UI CCWGG 5 cut(s) 593, 812, 1035, 1530, 1829
Bst4CI ACNGT 8 cut(s) 330, 531, 939, 1169, 1502, 1562, 1808, 1910
Bst6I CTCTTC 5 cut(s) 783, 1032, 1241, 1275, 1308
BstAUI TGTACA 1 cut(s) 2214
BstBAI YACGTR 2 cut(s) 1388, 1757
BstC8I GCNNGC 2 cut(s) 882, 1574
BstDEI CTNAG 5 cut(s) 198, 234, 906, 915, 1710
BstDSI CCRYGG 2 cut(s) 408, 1980
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 3 cut(s) 775, 954, 1315
BstFNI CGCG 1 cut(s) 2071
BstHHI GCGC 2 cut(s) 1797, 2073
BstKTI GATC 7 cut(s) 142, 568, 648, 715, 1108, 1374, 1732
BstMAI GTCTC 2 cut(s) 1006, 2029
BstMBI GATC 7 cut(s) 139, 565, 645, 712, 1105, 1371, 1729
BstMCI CGRYCG 1 cut(s) 1967
BstMWI GCNNNNNNNGC 3 cut(s) 332, 890, 916
BstNI CCWGG 5 cut(s) 593, 812, 1035, 1530, 1829
BstNSI RCATGY 3 cut(s) 897, 950, 1795
BstPI GGTNACC 1 cut(s) 587
BstSCI CCNGG 5 cut(s) 591, 810, 1033, 1528, 1827
BstSFI CTRYAG 2 cut(s) 1140, 1198
BstUI CGCG 1 cut(s) 2071
BstV1I GCAGC 4 cut(s) 374, 819, 1126, 1369
BstV2I GAAGAC 1 cut(s) 1934
BstX2I RGATCY 3 cut(s) 139, 712, 1105
BstYI RGATCY 3 cut(s) 139, 712, 1105
BstZ17I GTATAC 1 cut(s) 1257
BsuRI GGCC 5 cut(s) 407, 730, 1267, 1451, 1826
BtgI CCRYGG 2 cut(s) 408, 1980
BtsCI GGATG 3 cut(s) 775, 954, 1315
BtsI GCAGTG 2 cut(s) 31, 1165
BtsIMutI CAGTG 3 cut(s) 31, 326, 1165
BveI ACCTGC 1 cut(s) 1404
Cac8I GCNNGC 2 cut(s) 882, 1574
CaiI CAGNNNCTG 2 cut(s) 214, 1462
CfoI GCGC 2 cut(s) 1797, 2073
Cfr13I GGNCC 5 cut(s) 405, 728, 1265, 1450, 1825
CseI GACGC 1 cut(s) 739
CsiI ACCWGGT 1 cut(s) 591
Csp6I GTAC 4 cut(s) 161, 1044, 1498, 2215
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviQI GTAC 4 cut(s) 161, 1044, 1498, 2215
DdeI CTNAG 5 cut(s) 198, 234, 906, 915, 1710
DpnI GATC 7 cut(s) 141, 567, 647, 714, 1107, 1373, 1731
DpnII GATC 7 cut(s) 139, 565, 645, 712, 1105, 1371, 1729
DraI TTTAAA 3 cut(s) 1294, 1623, 2080
DraIII CACNNNGTG 1 cut(s) 1160
Eam1104I CTCTTC 5 cut(s) 783, 1032, 1241, 1275, 1308
EarI CTCTTC 5 cut(s) 783, 1032, 1241, 1275, 1308
Eco130I CCWWGG 1 cut(s) 1980
Eco57I CTGAAG 2 cut(s) 906, 1439
Eco72I CACGTG 1 cut(s) 1388
Eco88I CYCGRG 2 cut(s) 716, 1442
Eco91I GGTNACC 1 cut(s) 587
EcoO109I RGGNCCY 1 cut(s) 1450
EcoO65I GGTNACC 1 cut(s) 587
EcoRI GAATTC 1 cut(s) 1593
EcoRII CCWGG 5 cut(s) 591, 810, 1033, 1528, 1827
EcoT14I CCWWGG 1 cut(s) 1980
EcoT22I ATGCAT 1 cut(s) 2256
ErhI CCWWGG 1 cut(s) 1980
FaqI GGGAC 4 cut(s) 1217, 1338, 1344, 2019
FauNDI CATATG 1 cut(s) 115
FbaI TGATCA 2 cut(s) 565, 1371
FblI GTMKAC 1 cut(s) 1256
Fnu4HI GCNGC 6 cut(s) 304, 388, 833, 1140, 1223, 1383
FokI GGATG 3 cut(s) 782, 941, 1322
Fsp4HI GCNGC 6 cut(s) 304, 388, 833, 1140, 1223, 1383
FspBI CTAG 8 cut(s) 51, 192, 383, 975, 1005, 1064, 1187, 1494
FspI TGCGCA 1 cut(s) 1796
GlaI GCGC 2 cut(s) 1796, 2072
GluI GCNGC 6 cut(s) 304, 388, 833, 1140, 1223, 1383
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 577
HaeIII GGCC 5 cut(s) 407, 730, 1267, 1451, 1826
HgaI GACGC 1 cut(s) 739
HhaI GCGC 2 cut(s) 1797, 2073
Hin6I GCGC 2 cut(s) 1795, 2071
HinP1I GCGC 2 cut(s) 1795, 2071
HincII GTYRAC 2 cut(s) 808, 1393
HindII GTYRAC 2 cut(s) 808, 1393
HinfI GANTC 8 cut(s) 379, 722, 867, 1146, 1205, 1332, 1724, 2173
HphI GGTGA 6 cut(s) 290, 640, 862, 1331, 1577, 2071
Hpy166II GTNNAC 6 cut(s) 29, 418, 808, 1257, 1393, 2217
Hpy188I TCNGA 9 cut(s) 139, 235, 398, 829, 925, 1364, 1464, 1723, 1729
Hpy188III TCNNGA 4 cut(s) 46, 610, 1307, 1898
Hpy8I GTNNAC 6 cut(s) 29, 418, 808, 1257, 1393, 2217
HpyAV CCTTC 6 cut(s) 396, 488, 930, 1441, 1463, 1759
HpyCH4III ACNGT 8 cut(s) 330, 531, 939, 1169, 1502, 1562, 1808, 1910
HpyCH4IV ACGT 3 cut(s) 1387, 1756, 2089
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 890, 916
HpyF3I CTNAG 5 cut(s) 198, 234, 906, 915, 1710
HpySE526I ACGT 3 cut(s) 1387, 1756, 2089
HspAI GCGC 2 cut(s) 1795, 2071
Ksp22I TGATCA 2 cut(s) 565, 1371
Kzo9I GATC 7 cut(s) 139, 565, 645, 712, 1105, 1371, 1729
LguI GCTCTTC 2 cut(s) 1032, 1241
LmnI GCTCC 3 cut(s) 88, 2071, 2130
Lsp1109I GCAGC 4 cut(s) 374, 819, 1126, 1369
LweI GCATC 2 cut(s) 313, 1426
MabI ACCWGGT 1 cut(s) 591
MaeI CTAG 8 cut(s) 51, 192, 383, 975, 1005, 1064, 1187, 1494
MaeII ACGT 3 cut(s) 1387, 1756, 2089
MalI GATC 7 cut(s) 141, 567, 647, 714, 1107, 1373, 1731
MboI GATC 7 cut(s) 139, 565, 645, 712, 1105, 1371, 1729
MboII GAAGA 8 cut(s) 411, 797, 800, 1019, 1258, 1262, 1295, 1934
MflI RGATCY 3 cut(s) 139, 712, 1105
MhlI GDGCHC 3 cut(s) 221, 2018, 2068
MlyI GAGTC 3 cut(s) 1155, 1199, 1326
MmeI TCCRAC 3 cut(s) 513, 1625, 1930
Mph1103I ATGCAT 1 cut(s) 2256
MroXI GAANNNNTTC 2 cut(s) 939, 1893
MslI CAYNNNNRTG 4 cut(s) 760, 1116, 1472, 1631
MspA1I CMGCKG 1 cut(s) 1139
MspR9I CCNGG 5 cut(s) 593, 812, 1035, 1530, 1829
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 5 cut(s) 593, 812, 1035, 1530, 1829
MvnI CGCG 1 cut(s) 2071
MwoI GCNNNNNNNGC 3 cut(s) 332, 890, 916
NcoI CCATGG 1 cut(s) 1980
NdeI CATATG 1 cut(s) 115
NdeII GATC 7 cut(s) 139, 565, 645, 712, 1105, 1371, 1729
NmuCI GTSAC 4 cut(s) 614, 751, 772, 1147
NsbI TGCGCA 1 cut(s) 1796
NsiI ATGCAT 1 cut(s) 2256
NspI RCATGY 3 cut(s) 897, 950, 1795
OliI CACNNNNGTG 1 cut(s) 760
PciSI GCTCTTC 2 cut(s) 1032, 1241
PctI GAATGC 1 cut(s) 464
PdmI GAANNNNTTC 2 cut(s) 939, 1893
PfeI GAWTC 5 cut(s) 379, 722, 867, 1724, 2173
PkrI GCNGC 6 cut(s) 305, 389, 834, 1141, 1224, 1384
PleI GAGTC 3 cut(s) 1154, 1199, 1326
PmaCI CACGTG 1 cut(s) 1388
PmlI CACGTG 1 cut(s) 1388
PpsI GAGTC 3 cut(s) 1154, 1199, 1326
Ppu21I YACGTR 2 cut(s) 1388, 1757
PshBI ATTAAT 1 cut(s) 1629
Psp6I CCWGG 5 cut(s) 591, 810, 1033, 1528, 1827
PspCI CACGTG 1 cut(s) 1388
PspEI GGTNACC 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 5 cut(s) 591, 810, 1033, 1528, 1827
PspPI GGNCC 5 cut(s) 405, 728, 1265, 1450, 1825
PsrI GAACNNNNNNTAC 2 cut(s) 834, 866
PstI CTGCAG 1 cut(s) 1144
PstNI CAGNNNCTG 2 cut(s) 214, 1462
PsuI RGATCY 3 cut(s) 139, 712, 1105
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 4 cut(s) 162, 1045, 1499, 2216
RsaNI GTAC 4 cut(s) 161, 1044, 1498, 2215
RseI CAYNNNNRTG 4 cut(s) 760, 1116, 1472, 1631
SapI GCTCTTC 2 cut(s) 1032, 1241
SatI GCNGC 6 cut(s) 304, 388, 833, 1140, 1223, 1383
Sau3AI GATC 7 cut(s) 139, 565, 645, 712, 1105, 1371, 1729
Sau96I GGNCC 5 cut(s) 405, 728, 1265, 1450, 1825
SchI GAGTC 3 cut(s) 1155, 1199, 1326
ScrFI CCNGG 5 cut(s) 593, 812, 1035, 1530, 1829
SduI GDGCHC 3 cut(s) 221, 2018, 2068
SexAI ACCWGGT 1 cut(s) 591
SfaNI GCATC 2 cut(s) 313, 1426
SfcI CTRYAG 2 cut(s) 1140, 1198
SmiMI CAYNNNNRTG 4 cut(s) 760, 1116, 1472, 1631
SmlI CTYRAG 2 cut(s) 2017, 2054
SmoI CTYRAG 2 cut(s) 2017, 2054
SsiI CCGC 5 cut(s) 303, 1222, 1783, 1967, 2069
SspI AATATT 1 cut(s) 1702
SspMI CTAG 8 cut(s) 51, 192, 383, 975, 1005, 1064, 1187, 1494
StyD4I CCNGG 5 cut(s) 591, 810, 1033, 1528, 1827
StyI CCWWGG 1 cut(s) 1980
TaaI ACNGT 8 cut(s) 330, 531, 939, 1169, 1502, 1562, 1808, 1910
TaiI ACGT 3 cut(s) 1390, 1759, 2092
TaqI TCGA 3 cut(s) 39, 644, 1640
TatI WGTACW 1 cut(s) 2214
TauI GCSGC 2 cut(s) 306, 1225
TfiI GAWTC 5 cut(s) 379, 722, 867, 1724, 2173
TscAI CASTG 3 cut(s) 31, 333, 1165
TseFI GTSAC 4 cut(s) 614, 751, 772, 1147
TseI GCWGC 4 cut(s) 387, 832, 1139, 1382
Tsp45I GTSAC 4 cut(s) 614, 751, 772, 1147
TspDTI ATGAA 5 cut(s) 569, 903, 1875, 1889, 2142
TspGWI ACGGA 2 cut(s) 725, 793
TspRI CASTG 3 cut(s) 31, 333, 1165
VspI ATTAAT 1 cut(s) 1629
XapI RAATTY 5 cut(s) 123, 653, 1376, 1593, 2244
XceI RCATGY 3 cut(s) 897, 950, 1795
XcmI CCANNNNNNNNNTGG 2 cut(s) 87, 448
XmiI GTMKAC 1 cut(s) 1256
XmnI GAANNNNTTC 2 cut(s) 939, 1893
XspI CTAG 8 cut(s) 51, 192, 383, 975, 1005, 1064, 1187, 1494
Zsp2I ATGCAT 1 cut(s) 2256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.