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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 219 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 172 |
| AciI | CCGC | 3 cut(s) | 36, 39, 242 |
| AcoI | YGGCCR | 1 cut(s) | 33 |
| AcsI | RAATTY | 3 cut(s) | 24, 428, 863 |
| AfaI | GTAC | 1 cut(s) | 269 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 172, 321, 704, 716, 717, 950, 955, 993 |
| AflIII | ACRYGT | 1 cut(s) | 475 |
| AgsI | TTSAA | 1 cut(s) | 433 |
| AluBI | AGCT | 3 cut(s) | 46, 202, 309 |
| AluI | AGCT | 3 cut(s) | 46, 202, 309 |
| Alw21I | GWGCWC | 1 cut(s) | 940 |
| Alw26I | GTCTC | 1 cut(s) | 968 |
| Ama87I | CYCGRG | 2 cut(s) | 52, 314 |
| AoxI | GGCC | 6 cut(s) | 33, 61, 163, 707, 957, 1087 |
| ApaI | GGGCCC | 1 cut(s) | 711 |
| ApeKI | GCWGC | 2 cut(s) | 512, 1111 |
| ApoI | RAATTY | 3 cut(s) | 24, 428, 863 |
| AspS9I | GGNCC | 5 cut(s) | 163, 221, 707, 708, 957 |
| AsuC2I | CCSGG | 1 cut(s) | 219 |
| AsuHPI | GGTGA | 2 cut(s) | 271, 687 |
| AvaI | CYCGRG | 2 cut(s) | 52, 314 |
| AvaII | GGWCC | 1 cut(s) | 221 |
| BaeGI | GKGCMC | 1 cut(s) | 711 |
| BanII | GRGCYC | 1 cut(s) | 711 |
| BbsI | GAAGAC | 1 cut(s) | 375 |
| Bbv12I | GWGCWC | 1 cut(s) | 940 |
| BbvI | GCAGC | 2 cut(s) | 499, 1098 |
| BccI | CCATC | 6 cut(s) | 70, 112, 142, 287, 551, 688 |
| BceAI | ACGGC | 2 cut(s) | 797, 944 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 185, 219, 386, 420 |
| BclI | TGATCA | 2 cut(s) | 727, 733 |
| BcnI | CCSGG | 1 cut(s) | 219 |
| BcoDI | GTCTC | 1 cut(s) | 968 |
| BfaI | CTAG | 2 cut(s) | 360, 632 |
| BglII | AGATCT | 1 cut(s) | 362 |
| BisI | GCNGC | 5 cut(s) | 36, 39, 242, 513, 1112 |
| BlsI | GCNGC | 5 cut(s) | 37, 40, 243, 514, 1113 |
| BmcAI | AGTACT | 1 cut(s) | 269 |
| Bme1390I | CCNGG | 1 cut(s) | 219 |
| Bme18I | GGWCC | 1 cut(s) | 221 |
| BmeT110I | CYCGRG | 2 cut(s) | 52, 314 |
| BmgT120I | GGNCC | 5 cut(s) | 163, 221, 707, 708, 957 |
| BmiI | GGNNCC | 4 cut(s) | 240, 708, 709, 1157 |
| BmrFI | CCNGG | 1 cut(s) | 219 |
| BmrI | ACTGGG | 2 cut(s) | 110, 458 |
| BmsI | GCATC | 3 cut(s) | 341, 499, 683 |
| BmuI | ACTGGG | 2 cut(s) | 110, 458 |
| BpiI | GAAGAC | 1 cut(s) | 375 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 35, 67 |
| BpuEI | CTTGAG | 2 cut(s) | 871, 1112 |
| BpuMI | CCSGG | 1 cut(s) | 219 |
| BsaBI | GATNNNNATC | 2 cut(s) | 732, 903 |
| BsaJI | CCNNGG | 7 cut(s) | 30, 217, 255, 315, 949, 960, 1115 |
| BsaWI | WCCGGW | 1 cut(s) | 1105 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 432, 462, 572, 602 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 172, 321, 704, 716, 717, 950, 955, 993 |
| Bse1I | ACTGG | 5 cut(s) | 105, 464, 698, 808, 1186 |
| Bse3DI | GCAATG | 1 cut(s) | 499 |
| Bse8I | GATNNNNATC | 2 cut(s) | 732, 903 |
| BseDI | CCNNGG | 7 cut(s) | 30, 217, 255, 315, 949, 960, 1115 |
| BseJI | GATNNNNATC | 2 cut(s) | 732, 903 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 172, 321, 704, 716, 717, 950, 955, 993 |
| BseMI | GCAATG | 1 cut(s) | 499 |
| BseNI | ACTGG | 5 cut(s) | 105, 464, 698, 808, 1186 |
| BseRI | GAGGAG | 3 cut(s) | 456, 868, 930 |
| BseSI | GKGCMC | 1 cut(s) | 711 |
| BseXI | GCAGC | 2 cut(s) | 499, 1098 |
| BseYI | CCCAGC | 1 cut(s) | 616 |
| BsgI | GTGCAG | 1 cut(s) | 498 |
| BshFI | GGCC | 6 cut(s) | 35, 63, 165, 709, 959, 1089 |
| BsiHKAI | GWGCWC | 1 cut(s) | 940 |
| BsiHKCI | CYCGRG | 2 cut(s) | 52, 314 |
| BsiSI | CCGG | 2 cut(s) | 219, 1106 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 172, 321, 704, 716, 717, 950, 955, 993 |
| BsmAI | GTCTC | 1 cut(s) | 968 |
| BsmI | GAATGC | 1 cut(s) | 1013 |
| BsnI | GGCC | 6 cut(s) | 35, 63, 165, 709, 959, 1089 |
| BsoBI | CYCGRG | 2 cut(s) | 52, 314 |
| Bsp120I | GGGCCC | 1 cut(s) | 707 |
| Bsp1286I | GDGCHC | 2 cut(s) | 711, 940 |
| Bsp143I | GATC | 5 cut(s) | 7, 94, 362, 727, 733 |
| Bsp19I | CCATGG | 1 cut(s) | 1115 |
| BspACI | CCGC | 3 cut(s) | 36, 39, 242 |
| BspANI | GGCC | 6 cut(s) | 35, 63, 165, 709, 959, 1089 |
| BspHI | TCATGA | 2 cut(s) | 454, 730 |
| BspLI | GGNNCC | 4 cut(s) | 240, 708, 709, 1157 |
| BsrDI | GCAATG | 1 cut(s) | 499 |
| BsrI | ACTGG | 5 cut(s) | 105, 464, 698, 808, 1186 |
| BssECI | CCNNGG | 7 cut(s) | 30, 217, 255, 315, 949, 960, 1115 |
| BssMI | GATC | 5 cut(s) | 7, 94, 362, 727, 733 |
| BssT1I | CCWWGG | 2 cut(s) | 949, 1115 |
| Bst4CI | ACNGT | 4 cut(s) | 171, 259, 343, 1137 |
| BstC8I | GCNNGC | 3 cut(s) | 311, 330, 405 |
| BstDEI | CTNAG | 1 cut(s) | 1064 |
| BstDSI | CCRYGG | 4 cut(s) | 30, 255, 960, 1115 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 948 |
| BstKTI | GATC | 5 cut(s) | 10, 97, 365, 730, 736 |
| BstMAI | GTCTC | 1 cut(s) | 968 |
| BstMBI | GATC | 5 cut(s) | 7, 94, 362, 727, 733 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 935 |
| BstNSI | RCATGY | 3 cut(s) | 332, 407, 479 |
| BstSCI | CCNGG | 1 cut(s) | 217 |
| BstSLI | GKGCMC | 1 cut(s) | 711 |
| BstV1I | GCAGC | 2 cut(s) | 499, 1098 |
| BstV2I | GAAGAC | 1 cut(s) | 375 |
| BstX2I | RGATCY | 1 cut(s) | 362 |
| BstYI | RGATCY | 1 cut(s) | 362 |
| BsuRI | GGCC | 6 cut(s) | 35, 63, 165, 709, 959, 1089 |
| BtgI | CCRYGG | 4 cut(s) | 30, 255, 960, 1115 |
| Cac8I | GCNNGC | 3 cut(s) | 311, 330, 405 |
| CciI | TCATGA | 2 cut(s) | 454, 730 |
| Cfr13I | GGNCC | 5 cut(s) | 163, 221, 707, 708, 957 |
| Csp6I | GTAC | 1 cut(s) | 268 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 244, 279 |
| CviQI | GTAC | 1 cut(s) | 268 |
| DdeI | CTNAG | 1 cut(s) | 1064 |
| DpnI | GATC | 5 cut(s) | 9, 96, 364, 729, 735 |
| DpnII | GATC | 5 cut(s) | 7, 94, 362, 727, 733 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 219 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 219 |
| EaeI | YGGCCR | 1 cut(s) | 33 |
| Eco130I | CCWWGG | 2 cut(s) | 949, 1115 |
| Eco147I | AGGCCT | 1 cut(s) | 1089 |
| Eco24I | GRGCYC | 1 cut(s) | 711 |
| Eco32I | GATATC | 3 cut(s) | 111, 126, 141 |
| Eco47I | GGWCC | 1 cut(s) | 221 |
| Eco88I | CYCGRG | 2 cut(s) | 52, 314 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 948 |
| EcoO109I | RGGNCCY | 2 cut(s) | 707, 708 |
| EcoRV | GATATC | 3 cut(s) | 111, 126, 141 |
| EcoT14I | CCWWGG | 2 cut(s) | 949, 1115 |
| EcoT22I | ATGCAT | 1 cut(s) | 334 |
| EcoT38I | GRGCYC | 1 cut(s) | 711 |
| ErhI | CCWWGG | 2 cut(s) | 949, 1115 |
| FauNDI | CATATG | 1 cut(s) | 652 |
| FbaI | TGATCA | 2 cut(s) | 727, 733 |
| Fnu4HI | GCNGC | 5 cut(s) | 36, 39, 242, 513, 1112 |
| FriOI | GRGCYC | 1 cut(s) | 711 |
| Fsp4HI | GCNGC | 5 cut(s) | 36, 39, 242, 513, 1112 |
| FspBI | CTAG | 2 cut(s) | 360, 632 |
| GluI | GCNGC | 5 cut(s) | 36, 39, 242, 513, 1112 |
| GsaI | CCCAGC | 1 cut(s) | 620 |
| HaeIII | GGCC | 6 cut(s) | 35, 63, 165, 709, 959, 1089 |
| HapII | CCGG | 2 cut(s) | 219, 1106 |
| HincII | GTYRAC | 2 cut(s) | 574, 919 |
| HindII | GTYRAC | 2 cut(s) | 574, 919 |
| HindIII | AAGCTT | 1 cut(s) | 307 |
| HinfI | GANTC | 6 cut(s) | 55, 458, 520, 757, 904, 998 |
| HpaII | CCGG | 2 cut(s) | 219, 1106 |
| HphI | GGTGA | 2 cut(s) | 271, 687 |
| Hpy166II | GTNNAC | 5 cut(s) | 224, 301, 574, 919, 970 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 145, 738 |
| Hpy188III | TCNNGA | 3 cut(s) | 455, 731, 1177 |
| Hpy8I | GTNNAC | 5 cut(s) | 224, 301, 574, 919, 970 |
| Hpy99I | CGWCG | 1 cut(s) | 343 |
| HpyAV | CCTTC | 2 cut(s) | 261, 697 |
| HpyCH4III | ACNGT | 4 cut(s) | 171, 259, 343, 1137 |
| HpyCH4V | TGCA | 8 cut(s) | 273, 332, 413, 515, 546, 650, 796, 1084 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 935 |
| HpyF3I | CTNAG | 1 cut(s) | 1064 |
| Ksp22I | TGATCA | 2 cut(s) | 727, 733 |
| Kzo9I | GATC | 5 cut(s) | 7, 94, 362, 727, 733 |
| LmnI | GCTCC | 4 cut(s) | 199, 238, 325, 943 |
| Lsp1109I | GCAGC | 2 cut(s) | 499, 1098 |
| LweI | GCATC | 3 cut(s) | 341, 499, 683 |
| MaeI | CTAG | 2 cut(s) | 360, 632 |
| MaeIII | GTNAC | 4 cut(s) | 448, 700, 799, 1131 |
| MalI | GATC | 5 cut(s) | 9, 96, 364, 729, 735 |
| MboI | GATC | 5 cut(s) | 7, 94, 362, 727, 733 |
| MboII | GAAGA | 2 cut(s) | 375, 751 |
| MflI | RGATCY | 1 cut(s) | 362 |
| MhlI | GDGCHC | 2 cut(s) | 711, 940 |
| MluCI | AATT | 4 cut(s) | 24, 428, 536, 863 |
| MlyI | GAGTC | 3 cut(s) | 64, 751, 1007 |
| MmeI | TCCRAC | 1 cut(s) | 153 |
| Mph1103I | ATGCAT | 1 cut(s) | 334 |
| MseI | TTAA | 1 cut(s) | 1122 |
| MslI | CAYNNNNRTG | 3 cut(s) | 90, 408, 558 |
| MspI | CCGG | 2 cut(s) | 219, 1106 |
| MspR9I | CCNGG | 1 cut(s) | 219 |
| Mva1269I | GAATGC | 1 cut(s) | 1013 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 935 |
| NciI | CCSGG | 1 cut(s) | 219 |
| NcoI | CCATGG | 1 cut(s) | 1115 |
| NdeI | CATATG | 1 cut(s) | 652 |
| NdeII | GATC | 5 cut(s) | 7, 94, 362, 727, 733 |
| NlaIV | GGNNCC | 4 cut(s) | 240, 708, 709, 1157 |
| NmeAIII | GCCGAG | 1 cut(s) | 67 |
| NmuCI | GTSAC | 2 cut(s) | 448, 1131 |
| NsiI | ATGCAT | 1 cut(s) | 334 |
| NspI | RCATGY | 3 cut(s) | 332, 407, 479 |
| PaeI | GCATGC | 2 cut(s) | 332, 407 |
| PaeR7I | CTCGAG | 1 cut(s) | 52 |
| PagI | TCATGA | 2 cut(s) | 454, 730 |
| PceI | AGGCCT | 1 cut(s) | 1089 |
| PciI | ACATGT | 1 cut(s) | 475 |
| PctI | GAATGC | 1 cut(s) | 1013 |
| PfeI | GAWTC | 3 cut(s) | 458, 520, 904 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 172 |
| PkrI | GCNGC | 5 cut(s) | 37, 40, 243, 514, 1113 |
| PleI | GAGTC | 3 cut(s) | 63, 751, 1006 |
| PpsI | GAGTC | 3 cut(s) | 63, 751, 1006 |
| PscI | ACATGT | 1 cut(s) | 475 |
| PspFI | CCCAGC | 1 cut(s) | 616 |
| PspN4I | GGNNCC | 4 cut(s) | 240, 708, 709, 1157 |
| PspOMI | GGGCCC | 1 cut(s) | 707 |
| PspPI | GGNCC | 5 cut(s) | 163, 221, 707, 708, 957 |
| PspXI | VCTCGAGB | 1 cut(s) | 52 |
| PsuI | RGATCY | 1 cut(s) | 362 |
| RsaI | GTAC | 1 cut(s) | 269 |
| RsaNI | GTAC | 1 cut(s) | 268 |
| RseI | CAYNNNNRTG | 3 cut(s) | 90, 408, 558 |
| SaqAI | TTAA | 1 cut(s) | 1122 |
| SatI | GCNGC | 5 cut(s) | 36, 39, 242, 513, 1112 |
| Sau3AI | GATC | 5 cut(s) | 7, 94, 362, 727, 733 |
| Sau96I | GGNCC | 5 cut(s) | 163, 221, 707, 708, 957 |
| ScaI | AGTACT | 1 cut(s) | 269 |
| SchI | GAGTC | 3 cut(s) | 64, 751, 1007 |
| ScrFI | CCNGG | 1 cut(s) | 219 |
| SduI | GDGCHC | 2 cut(s) | 711, 940 |
| SetI | ASST | 8 cut(s) | 48, 53, 204, 253, 311, 663, 689, 1133 |
| SfaNI | GCATC | 3 cut(s) | 341, 499, 683 |
| Sfr274I | CTCGAG | 1 cut(s) | 52 |
| SinI | GGWCC | 1 cut(s) | 221 |
| SlaI | CTCGAG | 1 cut(s) | 52 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 90, 408, 558 |
| SmlI | CTYRAG | 3 cut(s) | 52, 850, 1091 |
| SmoI | CTYRAG | 3 cut(s) | 52, 850, 1091 |
| SphI | GCATGC | 2 cut(s) | 332, 407 |
| Sse9I | AATT | 4 cut(s) | 24, 428, 536, 863 |
| SseBI | AGGCCT | 1 cut(s) | 1089 |
| SsiI | CCGC | 3 cut(s) | 36, 39, 242 |
| SspI | AATATT | 1 cut(s) | 640 |
| SspMI | CTAG | 2 cut(s) | 360, 632 |
| StuI | AGGCCT | 1 cut(s) | 1089 |
| StyD4I | CCNGG | 1 cut(s) | 217 |
| StyI | CCWWGG | 2 cut(s) | 949, 1115 |
| TaaI | ACNGT | 4 cut(s) | 171, 259, 343, 1137 |
| TaqI | TCGA | 4 cut(s) | 53, 182, 907, 1098 |
| TasI | AATT | 4 cut(s) | 24, 428, 536, 863 |
| TatI | WGTACW | 1 cut(s) | 267 |
| TauI | GCSGC | 3 cut(s) | 38, 41, 244 |
| TfiI | GAWTC | 3 cut(s) | 458, 520, 904 |
| Tru1I | TTAA | 1 cut(s) | 1122 |
| Tru9I | TTAA | 1 cut(s) | 1122 |
| TseFI | GTSAC | 2 cut(s) | 448, 1131 |
| TseI | GCWGC | 2 cut(s) | 512, 1111 |
| Tsp45I | GTSAC | 2 cut(s) | 448, 1131 |
| TspDTI | ATGAA | 7 cut(s) | 435, 471, 588, 828, 872, 1043, 1136 |
| TspGWI | ACGGA | 4 cut(s) | 19, 251, 532, 593 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 172 |
| VpaK11BI | GGWCC | 1 cut(s) | 221 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 948 |
| XapI | RAATTY | 3 cut(s) | 24, 428, 863 |
| XceI | RCATGY | 3 cut(s) | 332, 407, 479 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 290, 1178 |
| XhoI | CTCGAG | 1 cut(s) | 52 |
| XspI | CTAG | 2 cut(s) | 360, 632 |
| ZrmI | AGTACT | 1 cut(s) | 269 |
| Zsp2I | ATGCAT | 1 cut(s) | 334 |