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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 689 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 438 |
| AccII | CGCG | 1 cut(s) | 509 |
| AciI | CCGC | 2 cut(s) | 311, 693 |
| AclWI | GGATC | 2 cut(s) | 107, 416 |
| AcoI | YGGCCR | 2 cut(s) | 789, 996 |
| AcsI | RAATTY | 1 cut(s) | 836 |
| AcuI | CTGAAG | 2 cut(s) | 59, 336 |
| AcyI | GRCGYC | 1 cut(s) | 690 |
| AfaI | GTAC | 1 cut(s) | 108 |
| AfeI | AGCGCT | 1 cut(s) | 1049 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 438, 487, 584, 589, 743 |
| AflIII | ACRYGT | 1 cut(s) | 822 |
| AgsI | TTSAA | 4 cut(s) | 92, 289, 842, 965 |
| AjiI | CACGTC | 1 cut(s) | 699 |
| AjnI | CCWGG | 2 cut(s) | 475, 639 |
| AleI | CACNNNNGTG | 1 cut(s) | 535 |
| AluBI | AGCT | 5 cut(s) | 83, 189, 292, 515, 1019 |
| AluI | AGCT | 5 cut(s) | 83, 189, 292, 515, 1019 |
| Alw21I | GWGCWC | 1 cut(s) | 58 |
| Alw44I | GTGCAC | 1 cut(s) | 54 |
| AlwI | GGATC | 2 cut(s) | 107, 416 |
| Ama87I | CYCGRG | 1 cut(s) | 660 |
| Aor51HI | AGCGCT | 1 cut(s) | 1049 |
| AoxI | GGCC | 4 cut(s) | 224, 478, 789, 996 |
| ApaLI | GTGCAC | 1 cut(s) | 54 |
| ApeKI | GCWGC | 1 cut(s) | 320 |
| ApoI | RAATTY | 1 cut(s) | 836 |
| AspLEI | GCGC | 2 cut(s) | 692, 1050 |
| AspS9I | GGNCC | 2 cut(s) | 479, 876 |
| AsuHPI | GGTGA | 1 cut(s) | 235 |
| AvaI | CYCGRG | 1 cut(s) | 660 |
| AvaII | GGWCC | 1 cut(s) | 876 |
| BaeGI | GKGCMC | 2 cut(s) | 58, 391 |
| BanI | GGYRCC | 1 cut(s) | 689 |
| BbsI | GAAGAC | 1 cut(s) | 1032 |
| Bbv12I | GWGCWC | 1 cut(s) | 58 |
| BbvI | GCAGC | 1 cut(s) | 332 |
| BccI | CCATC | 4 cut(s) | 44, 254, 388, 665 |
| BceAI | ACGGC | 2 cut(s) | 391, 804 |
| BciT130I | CCWGG | 2 cut(s) | 477, 641 |
| BfaI | CTAG | 2 cut(s) | 203, 1051 |
| BfoI | RGCGCY | 2 cut(s) | 693, 1051 |
| BisI | GCNGC | 2 cut(s) | 321, 693 |
| BlsI | GCNGC | 2 cut(s) | 322, 694 |
| BmcAI | AGTACT | 1 cut(s) | 108 |
| Bme1390I | CCNGG | 2 cut(s) | 477, 641 |
| Bme18I | GGWCC | 1 cut(s) | 876 |
| BmeT110I | CYCGRG | 1 cut(s) | 660 |
| BmgBI | CACGTC | 1 cut(s) | 699 |
| BmgT120I | GGNCC | 2 cut(s) | 479, 876 |
| BmiI | GGNNCC | 1 cut(s) | 691 |
| BmrFI | CCNGG | 2 cut(s) | 477, 641 |
| BmsI | GCATC | 5 cut(s) | 312, 348, 387, 550, 823 |
| BpiI | GAAGAC | 1 cut(s) | 1032 |
| BpmI | CTGGAG | 2 cut(s) | 105, 278 |
| BpuEI | CTTGAG | 1 cut(s) | 830 |
| BsaHI | GRCGYC | 1 cut(s) | 690 |
| BsaJI | CCNNGG | 3 cut(s) | 221, 583, 685 |
| BsaWI | WCCGGW | 1 cut(s) | 115 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 438, 487, 584, 589, 743 |
| Bse118I | RCCGGY | 1 cut(s) | 994 |
| Bse1I | ACTGG | 3 cut(s) | 104, 545, 559 |
| Bse3DI | GCAATG | 2 cut(s) | 477, 870 |
| BseBI | CCWGG | 2 cut(s) | 477, 641 |
| BseDI | CCNNGG | 3 cut(s) | 221, 583, 685 |
| BseGI | GGATG | 4 cut(s) | 246, 363, 541, 724 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 438, 487, 584, 589, 743 |
| BseMI | GCAATG | 2 cut(s) | 477, 870 |
| BseMII | CTCAG | 1 cut(s) | 402 |
| BseNI | ACTGG | 3 cut(s) | 104, 545, 559 |
| BseSI | GKGCMC | 2 cut(s) | 58, 391 |
| BseXI | GCAGC | 1 cut(s) | 332 |
| BseYI | CCCAGC | 1 cut(s) | 280 |
| BsgI | GTGCAG | 1 cut(s) | 975 |
| Bsh1236I | CGCG | 1 cut(s) | 509 |
| BshFI | GGCC | 4 cut(s) | 226, 480, 791, 998 |
| BshNI | GGYRCC | 1 cut(s) | 689 |
| BsiHKAI | GWGCWC | 1 cut(s) | 58 |
| BsiHKCI | CYCGRG | 1 cut(s) | 660 |
| BsiSI | CCGG | 2 cut(s) | 116, 995 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 438, 487, 584, 589, 743 |
| BsnI | GGCC | 4 cut(s) | 226, 480, 791, 998 |
| BsoBI | CYCGRG | 1 cut(s) | 660 |
| Bsp1286I | GDGCHC | 2 cut(s) | 58, 391 |
| Bsp143I | GATC | 3 cut(s) | 112, 421, 612 |
| Bsp68I | TCGCGA | 1 cut(s) | 509 |
| BspACI | CCGC | 2 cut(s) | 311, 693 |
| BspANI | GGCC | 4 cut(s) | 226, 480, 791, 998 |
| BspCNI | CTCAG | 1 cut(s) | 403 |
| BspFNI | CGCG | 1 cut(s) | 509 |
| BspLI | GGNNCC | 1 cut(s) | 691 |
| BspPI | GGATC | 2 cut(s) | 107, 416 |
| BspT107I | GGYRCC | 1 cut(s) | 689 |
| BsrDI | GCAATG | 2 cut(s) | 477, 870 |
| BsrFI | RCCGGY | 1 cut(s) | 994 |
| BsrI | ACTGG | 3 cut(s) | 104, 545, 559 |
| BssAI | RCCGGY | 1 cut(s) | 994 |
| BssECI | CCNNGG | 3 cut(s) | 221, 583, 685 |
| BssMI | GATC | 3 cut(s) | 112, 421, 612 |
| BssNI | GRCGYC | 1 cut(s) | 690 |
| BssT1I | CCWWGG | 2 cut(s) | 221, 685 |
| Bst2UI | CCWGG | 2 cut(s) | 477, 641 |
| Bst4CI | ACNGT | 1 cut(s) | 274 |
| BstACI | GRCGYC | 1 cut(s) | 690 |
| BstC8I | GCNNGC | 2 cut(s) | 81, 449 |
| BstDEI | CTNAG | 1 cut(s) | 411 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 582 |
| BstF5I | GGATG | 4 cut(s) | 246, 363, 541, 724 |
| BstFNI | CGCG | 1 cut(s) | 509 |
| BstH2I | RGCGCY | 2 cut(s) | 693, 1051 |
| BstHHI | GCGC | 2 cut(s) | 692, 1050 |
| BstKTI | GATC | 3 cut(s) | 115, 424, 615 |
| BstMBI | GATC | 3 cut(s) | 112, 421, 612 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 39, 448 |
| BstNI | CCWGG | 2 cut(s) | 477, 641 |
| BstNSI | RCATGY | 1 cut(s) | 826 |
| BstSCI | CCNGG | 2 cut(s) | 475, 639 |
| BstSLI | GKGCMC | 2 cut(s) | 58, 391 |
| BstUI | CGCG | 1 cut(s) | 509 |
| BstV1I | GCAGC | 1 cut(s) | 332 |
| BstV2I | GAAGAC | 1 cut(s) | 1032 |
| BsuRI | GGCC | 4 cut(s) | 226, 480, 791, 998 |
| BtrI | CACGTC | 1 cut(s) | 699 |
| BtsCI | GGATG | 4 cut(s) | 246, 363, 541, 724 |
| BtsI | GCAGTG | 2 cut(s) | 35, 298 |
| BtsIMutI | CAGTG | 3 cut(s) | 35, 298, 340 |
| BtuMI | TCGCGA | 1 cut(s) | 509 |
| Cac8I | GCNNGC | 2 cut(s) | 81, 449 |
| CfoI | GCGC | 2 cut(s) | 692, 1050 |
| Cfr10I | RCCGGY | 1 cut(s) | 994 |
| Cfr13I | GGNCC | 2 cut(s) | 479, 876 |
| CseI | GACGC | 1 cut(s) | 453 |
| CsiI | ACCWGGT | 1 cut(s) | 639 |
| Csp6I | GTAC | 1 cut(s) | 107 |
| CviAII | CATG | 3 cut(s) | 35, 384, 823 |
| CviQI | GTAC | 1 cut(s) | 107 |
| DdeI | CTNAG | 1 cut(s) | 411 |
| DinI | GGCGCC | 1 cut(s) | 691 |
| DpnI | GATC | 3 cut(s) | 114, 423, 614 |
| DpnII | GATC | 3 cut(s) | 112, 421, 612 |
| EaeI | YGGCCR | 2 cut(s) | 789, 996 |
| EciI | GGCGGA | 1 cut(s) | 300 |
| Eco130I | CCWWGG | 2 cut(s) | 221, 685 |
| Eco47I | GGWCC | 1 cut(s) | 876 |
| Eco47III | AGCGCT | 1 cut(s) | 1049 |
| Eco57I | CTGAAG | 2 cut(s) | 59, 336 |
| Eco88I | CYCGRG | 1 cut(s) | 660 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 582 |
| EcoO109I | RGGNCCY | 1 cut(s) | 876 |
| EcoRII | CCWGG | 2 cut(s) | 475, 639 |
| EcoT14I | CCWWGG | 2 cut(s) | 221, 685 |
| EgeI | GGCGCC | 1 cut(s) | 691 |
| EheI | GGCGCC | 1 cut(s) | 691 |
| ErhI | CCWWGG | 2 cut(s) | 221, 685 |
| FaeI | CATG | 3 cut(s) | 38, 387, 826 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 57, 89 |
| FatI | CATG | 3 cut(s) | 34, 383, 822 |
| FauNDI | CATATG | 1 cut(s) | 352 |
| Fnu4HI | GCNGC | 2 cut(s) | 321, 693 |
| FokI | GGATG | 4 cut(s) | 233, 370, 528, 711 |
| Fsp4HI | GCNGC | 2 cut(s) | 321, 693 |
| FspBI | CTAG | 2 cut(s) | 203, 1051 |
| GlaI | GCGC | 2 cut(s) | 691, 1049 |
| GluI | GCNGC | 2 cut(s) | 321, 693 |
| GsaI | CCCAGC | 1 cut(s) | 284 |
| GsuI | CTGGAG | 2 cut(s) | 105, 278 |
| HaeII | RGCGCY | 2 cut(s) | 693, 1051 |
| HaeIII | GGCC | 4 cut(s) | 226, 480, 791, 998 |
| HapII | CCGG | 2 cut(s) | 116, 995 |
| HgaI | GACGC | 1 cut(s) | 453 |
| HhaI | GCGC | 2 cut(s) | 692, 1050 |
| Hin1I | GRCGYC | 1 cut(s) | 690 |
| Hin1II | CATG | 3 cut(s) | 38, 387, 826 |
| Hin6I | GCGC | 2 cut(s) | 690, 1048 |
| HinP1I | GCGC | 2 cut(s) | 690, 1048 |
| HincII | GTYRAC | 3 cut(s) | 277, 904, 931 |
| HindII | GTYRAC | 3 cut(s) | 277, 904, 931 |
| HinfI | GANTC | 4 cut(s) | 92, 217, 501, 665 |
| HpaI | GTTAAC | 1 cut(s) | 931 |
| HpaII | CCGG | 2 cut(s) | 116, 995 |
| HphI | GGTGA | 1 cut(s) | 235 |
| Hpy166II | GTNNAC | 4 cut(s) | 56, 277, 904, 931 |
| Hpy188I | TCNGA | 5 cut(s) | 412, 426, 584, 670, 987 |
| Hpy188III | TCNNGA | 5 cut(s) | 508, 635, 660, 809, 874 |
| Hpy8I | GTNNAC | 4 cut(s) | 56, 277, 904, 931 |
| Hpy99I | CGWCG | 1 cut(s) | 447 |
| HpyAV | CCTTC | 2 cut(s) | 59, 658 |
| HpyCH4III | ACNGT | 1 cut(s) | 274 |
| HpyCH4IV | ACGT | 2 cut(s) | 125, 698 |
| HpyCH4V | TGCA | 5 cut(s) | 56, 303, 350, 706, 992 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 39, 448 |
| HpyF3I | CTNAG | 1 cut(s) | 411 |
| HpySE526I | ACGT | 2 cut(s) | 125, 698 |
| Hsp92I | GRCGYC | 1 cut(s) | 690 |
| Hsp92II | CATG | 3 cut(s) | 38, 387, 826 |
| HspAI | GCGC | 2 cut(s) | 690, 1048 |
| KasI | GGCGCC | 1 cut(s) | 689 |
| KspAI | GTTAAC | 1 cut(s) | 931 |
| Kzo9I | GATC | 3 cut(s) | 112, 421, 612 |
| LmnI | GCTCC | 2 cut(s) | 194, 297 |
| Lsp1109I | GCAGC | 1 cut(s) | 332 |
| LweI | GCATC | 5 cut(s) | 312, 348, 387, 550, 823 |
| MabI | ACCWGGT | 1 cut(s) | 639 |
| MaeI | CTAG | 2 cut(s) | 203, 1051 |
| MaeII | ACGT | 2 cut(s) | 125, 698 |
| MaeIII | GTNAC | 1 cut(s) | 709 |
| MalI | GATC | 3 cut(s) | 114, 423, 614 |
| MboI | GATC | 3 cut(s) | 112, 421, 612 |
| MboII | GAAGA | 4 cut(s) | 65, 983, 986, 1037 |
| MhlI | GDGCHC | 2 cut(s) | 58, 391 |
| MluCI | AATT | 4 cut(s) | 433, 676, 767, 836 |
| Mly113I | GGCGCC | 1 cut(s) | 690 |
| MmeI | TCCRAC | 3 cut(s) | 449, 478, 1010 |
| MnlI | CCTC | 8 cut(s) | 171, 251, 462, 515, 578, 582, 862, 949 |
| MseI | TTAA | 1 cut(s) | 930 |
| MslI | CAYNNNNRTG | 1 cut(s) | 535 |
| MspI | CCGG | 2 cut(s) | 116, 995 |
| MspR9I | CCNGG | 2 cut(s) | 477, 641 |
| MvaI | CCWGG | 2 cut(s) | 477, 641 |
| MvnI | CGCG | 1 cut(s) | 509 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 39, 448 |
| NarI | GGCGCC | 1 cut(s) | 690 |
| NdeI | CATATG | 1 cut(s) | 352 |
| NdeII | GATC | 3 cut(s) | 112, 421, 612 |
| NlaIII | CATG | 3 cut(s) | 38, 387, 826 |
| NlaIV | GGNNCC | 1 cut(s) | 691 |
| NmeAIII | GCCGAG | 1 cut(s) | 1030 |
| NruI | TCGCGA | 1 cut(s) | 509 |
| NspI | RCATGY | 1 cut(s) | 826 |
| OliI | CACNNNNGTG | 1 cut(s) | 535 |
| PciI | ACATGT | 1 cut(s) | 822 |
| PfeI | GAWTC | 4 cut(s) | 92, 217, 501, 665 |
| PflFI | GACNNNGTC | 1 cut(s) | 272 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 438 |
| PkrI | GCNGC | 2 cut(s) | 322, 694 |
| PluTI | GGCGCC | 1 cut(s) | 693 |
| PpuMI | RGGWCCY | 1 cut(s) | 876 |
| PscI | ACATGT | 1 cut(s) | 822 |
| Psp5II | RGGWCCY | 1 cut(s) | 876 |
| Psp6I | CCWGG | 2 cut(s) | 475, 639 |
| PspFI | CCCAGC | 1 cut(s) | 280 |
| PspGI | CCWGG | 2 cut(s) | 475, 639 |
| PspN4I | GGNNCC | 1 cut(s) | 691 |
| PspPI | GGNCC | 2 cut(s) | 479, 876 |
| PspPPI | RGGWCCY | 1 cut(s) | 876 |
| PsyI | GACNNNGTC | 1 cut(s) | 272 |
| RruI | TCGCGA | 1 cut(s) | 509 |
| RsaI | GTAC | 1 cut(s) | 108 |
| RsaNI | GTAC | 1 cut(s) | 107 |
| RseI | CAYNNNNRTG | 1 cut(s) | 535 |
| SaqAI | TTAA | 1 cut(s) | 930 |
| SatI | GCNGC | 2 cut(s) | 321, 693 |
| Sau3AI | GATC | 3 cut(s) | 112, 421, 612 |
| Sau96I | GGNCC | 2 cut(s) | 479, 876 |
| ScaI | AGTACT | 1 cut(s) | 108 |
| ScrFI | CCNGG | 2 cut(s) | 477, 641 |
| SduI | GDGCHC | 2 cut(s) | 58, 391 |
| SexAI | ACCWGGT | 1 cut(s) | 639 |
| SfaNI | GCATC | 5 cut(s) | 312, 348, 387, 550, 823 |
| SfoI | GGCGCC | 1 cut(s) | 691 |
| SinI | GGWCC | 1 cut(s) | 876 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 535 |
| SmlI | CTYRAG | 1 cut(s) | 809 |
| SmoI | CTYRAG | 1 cut(s) | 809 |
| Sse9I | AATT | 4 cut(s) | 433, 676, 767, 836 |
| SsiI | CCGC | 2 cut(s) | 311, 693 |
| SspDI | GGCGCC | 1 cut(s) | 689 |
| SspI | AATATT | 1 cut(s) | 803 |
| SspMI | CTAG | 2 cut(s) | 203, 1051 |
| StyD4I | CCNGG | 2 cut(s) | 475, 639 |
| StyI | CCWWGG | 2 cut(s) | 221, 685 |
| TaaI | ACNGT | 1 cut(s) | 274 |
| TaiI | ACGT | 2 cut(s) | 128, 701 |
| TasI | AATT | 4 cut(s) | 433, 676, 767, 836 |
| TatI | WGTACW | 1 cut(s) | 106 |
| TauI | GCSGC | 1 cut(s) | 695 |
| TfiI | GAWTC | 4 cut(s) | 92, 217, 501, 665 |
| Tru1I | TTAA | 1 cut(s) | 930 |
| Tru9I | TTAA | 1 cut(s) | 930 |
| TscAI | CASTG | 3 cut(s) | 35, 305, 340 |
| TseI | GCWGC | 1 cut(s) | 320 |
| TspDTI | ATGAA | 6 cut(s) | 78, 509, 813, 872, 876, 1002 |
| TspGWI | ACGGA | 1 cut(s) | 450 |
| TspRI | CASTG | 3 cut(s) | 35, 305, 340 |
| Tth111I | GACNNNGTC | 1 cut(s) | 272 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 438 |
| VneI | GTGCAC | 1 cut(s) | 54 |
| VpaK11BI | GGWCC | 1 cut(s) | 876 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 582 |
| XapI | RAATTY | 1 cut(s) | 836 |
| XceI | RCATGY | 1 cut(s) | 826 |
| XspI | CTAG | 2 cut(s) | 203, 1051 |
| ZrmI | AGTACT | 1 cut(s) | 108 |