Rh7AG030200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000150
Physical Location & Seq
Forward (+)
1981513 .. 1983339
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG030200.1

Sequence Viewer

Length: 813 bp
ATGGGAGAAAAGCATGAATTACTTAACCTTGTAGCAAACTTCTTCGATAAAACCAAGTTTGAGGTCCCGGACTATTTTGTTTTGGAGAGCGCGAGGTTCTGCAGCTCCTCCAAGTTGCACCTTTTGATTAAAGAAGGACCACCATCTGCACTAGGCTGGACTAAGCGGAGCACCATCACCGCTGCCTCCATGGCCAAGGCCGGCTCATTGAGGGGATATATTTTTCACACAAAATCAAGATCCTTGGAGGCTTTCAAGCCGCCTCAATCATTGAAGCGAGTTGCTGTTGTTATATCTGACTATGATAAGCTTTATCACCTTGCCGATCCAATATGCTTTCCGGAGATGCCAAAGCCATCCTTTGAGCGATATGATCCCATCACCGACTCTTGGGAGGCACTCCCTCCAGTTGGGGAGGATTTTGAACCAAAAGAAAGAGGGAGTGTTGATATGATGGAGGAGCAGCCGAAAGAAGAAACAGCGCTGATTTCTGATGAAATCATGGAGGACAGAGGTATTTCAGTAAATGAAGAAGAAACAAATTCCCAATGTGATTCAGAAAATGAAGAAGAAACAAAATGTGAAGGTGAGTCAGAAAATGAAGAAACAAAATGCGAAGGTGATTCAGAAAATGAAGAAAGAGAAGACAAGGAGAAGTCTGTTAATGGCGTTAGTGCTTGTCCATTGGCTAAGGAAAAGGGGACAGCCGAAAAGAGAGACAAAATATTGAGTATTTTTCACAGGAGCCTTAAAGCCAAGTCTGGTCACAAGAAGCGTAAATGGAAGAATGTTTCATCAAGGTCCGTCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.53

Weight (kDa)

5.19

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 3 cut(s) 166, 180, 260
AclWI GGATC 3 cut(s) 234, 320, 368
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 541
AfeI AGCGCT 1 cut(s) 483
AfiI CCNNNNNNNGG 2 cut(s) 390, 410
AgsI TTSAA 3 cut(s) 256, 274, 425
AluBI AGCT 2 cut(s) 105, 310
AluI AGCT 2 cut(s) 105, 310
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 711
AlwI GGATC 3 cut(s) 234, 320, 368
Aor13HI TCCGGA 1 cut(s) 340
Aor51HI AGCGCT 1 cut(s) 483
AoxI GGCC 2 cut(s) 192, 198
ApeKI GCWGC 3 cut(s) 102, 182, 463
ApoI RAATTY 1 cut(s) 541
AspLEI GCGC 2 cut(s) 92, 484
AspS9I GGNCC 3 cut(s) 64, 137, 801
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 5 cut(s) 169, 308, 373, 599, 632
AvaII GGWCC 3 cut(s) 64, 137, 801
BalI TGGCCA 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 3 cut(s) 114, 169, 475
BccI CCATC 5 cut(s) 151, 182, 364, 386, 448
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 100
BfoI RGCGCY 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 4 cut(s) 103, 183, 260, 464
BlsI GCNGC 4 cut(s) 104, 184, 261, 465
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 3 cut(s) 64, 137, 801
BmgT120I GGNCC 3 cut(s) 64, 137, 801
BmiI GGNNCC 2 cut(s) 66, 746
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 3 cut(s) 189, 195, 243
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 2 cut(s) 390, 410
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 407
BseAI TCCGGA 1 cut(s) 340
BseDI CCNNGG 3 cut(s) 189, 195, 243
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 390, 410
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 97, 473
BseXI GCAGC 3 cut(s) 114, 169, 475
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 194, 200
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 3 cut(s) 68, 201, 341
BslFI GGGAC 2 cut(s) 50, 715
BslI CCNNNNNNNGG 2 cut(s) 390, 410
BsmAI GTCTC 1 cut(s) 711
BsmFI GGGAC 2 cut(s) 50, 715
BsnI GGCC 2 cut(s) 194, 200
Bsp1286I GDGCHC 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 3 cut(s) 239, 325, 373
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 3 cut(s) 166, 180, 260
BspANI GGCC 2 cut(s) 194, 200
BspEI TCCGGA 1 cut(s) 340
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 66, 746
BspMAI CTGCAG 1 cut(s) 104
BspPI GGATC 3 cut(s) 234, 320, 368
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 189, 195, 243
BssMI GATC 3 cut(s) 239, 325, 373
BssT1I CCWWGG 3 cut(s) 189, 195, 243
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 162, 690
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 2 cut(s) 92, 484
BstKTI GATC 3 cut(s) 242, 328, 376
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 3 cut(s) 239, 325, 373
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 100
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 114, 169, 475
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 2 cut(s) 194, 200
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 2 cut(s) 92, 484
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 64, 137, 801
CviAII CATG 3 cut(s) 14, 190, 502
DdeI CTNAG 2 cut(s) 162, 690
DpnI GATC 3 cut(s) 241, 327, 375
DpnII GATC 3 cut(s) 239, 325, 373
EaeI YGGCCR 1 cut(s) 192
Eco130I CCWWGG 3 cut(s) 189, 195, 243
Eco47I GGWCC 3 cut(s) 64, 137, 801
Eco47III AGCGCT 1 cut(s) 483
EcoO109I RGGNCCY 1 cut(s) 64
EcoT14I CCWWGG 3 cut(s) 189, 195, 243
ErhI CCWWGG 3 cut(s) 189, 195, 243
FaeI CATG 3 cut(s) 17, 193, 505
FaiI YATR 9 cut(s) 15, 191, 219, 293, 303, 334, 372, 452, 503
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 2 cut(s) 50, 715
FatI CATG 3 cut(s) 13, 189, 501
Fnu4HI GCNGC 4 cut(s) 103, 183, 260, 464
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 4 cut(s) 103, 183, 260, 464
FspBI CTAG 1 cut(s) 152
GlaI GCGC 2 cut(s) 91, 483
GluI GCNGC 4 cut(s) 103, 183, 260, 464
GsuI CTGGAG 1 cut(s) 390
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 2 cut(s) 194, 200
HapII CCGG 3 cut(s) 68, 201, 341
HhaI GCGC 2 cut(s) 92, 484
Hin1II CATG 3 cut(s) 17, 193, 505
Hin6I GCGC 2 cut(s) 90, 482
HinP1I GCGC 2 cut(s) 90, 482
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 4 cut(s) 386, 554, 590, 623
HpaII CCGG 3 cut(s) 68, 201, 341
HphI GGTGA 5 cut(s) 169, 308, 373, 599, 632
Hpy188I TCNGA 5 cut(s) 298, 493, 559, 595, 628
Hpy188III TCNNGA 2 cut(s) 237, 341
HpyAV CCTTC 3 cut(s) 128, 578, 611
HpyCH4V TGCA 3 cut(s) 102, 118, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 162, 690
Hsp92II CATG 3 cut(s) 17, 193, 505
HspAI GCGC 2 cut(s) 90, 482
Kpn2I TCCGGA 1 cut(s) 340
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 3 cut(s) 239, 325, 373
LmnI GCTCC 4 cut(s) 110, 168, 460, 744
LpnPI CCDG 7 cut(s) 81, 142, 214, 354, 420, 727, 747
Lsp1109I GCAGC 3 cut(s) 114, 169, 475
LweI GCATC 1 cut(s) 336
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 764
MalI GATC 3 cut(s) 241, 327, 375
MboI GATC 3 cut(s) 239, 325, 373
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 173
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 2 cut(s) 17, 541
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 2 cut(s) 380, 599
Mox20I TGGCCA 1 cut(s) 194
MroI TCCGGA 1 cut(s) 340
MroNI GCCGGC 1 cut(s) 200
MscI TGGCCA 1 cut(s) 194
MseI TTAA 4 cut(s) 24, 129, 663, 750
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 3 cut(s) 68, 201, 341
MspR9I CCNGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 191
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 189
NdeII GATC 3 cut(s) 239, 325, 373
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 3 cut(s) 17, 193, 505
NlaIV GGNNCC 2 cut(s) 66, 746
NmuCI GTSAC 1 cut(s) 764
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 554, 623
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 4 cut(s) 104, 184, 261, 465
PleI GAGTC 2 cut(s) 380, 598
PpsI GAGTC 2 cut(s) 380, 598
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 66, 746
PspPI GGNCC 3 cut(s) 64, 137, 801
PspPPI RGGWCCY 1 cut(s) 64
PstI CTGCAG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 239
SaqAI TTAA 4 cut(s) 24, 129, 663, 750
SatI GCNGC 4 cut(s) 103, 183, 260, 464
Sau3AI GATC 3 cut(s) 239, 325, 373
Sau96I GGNCC 3 cut(s) 64, 137, 801
SchI GAGTC 2 cut(s) 380, 599
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 173
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 100
SinI GGWCC 3 cut(s) 64, 137, 801
Sse9I AATT 2 cut(s) 17, 541
SsiI CCGC 3 cut(s) 166, 180, 260
SspI AATATT 1 cut(s) 726
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 3 cut(s) 189, 195, 243
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 17, 541
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 2 cut(s) 554, 623
Tru1I TTAA 4 cut(s) 24, 129, 663, 750
Tru9I TTAA 4 cut(s) 24, 129, 663, 750
TseFI GTSAC 1 cut(s) 764
TseI GCWGC 3 cut(s) 102, 182, 463
Tsp45I GTSAC 1 cut(s) 764
TspDTI ATGAA 7 cut(s) 30, 510, 543, 579, 615, 648, 783
TspGWI ACGGA 1 cut(s) 793
VpaK11BI GGWCC 3 cut(s) 64, 137, 801
XapI RAATTY 1 cut(s) 541
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.