Rmu_sc0017925.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017925.1
OG0000150
Physical Location & Seq
Forward (+)
135 .. 1523
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017925.1_g000001.1.cds

Sequence Viewer

Length: 1041 bp
atggagatgagtgtaaaccagcggaaagataaatccatgtttgttctggtgagtttctattgtggtccataccatggtgcactatatgaagtaaaacttgagcatggagaatcaggtaaagcttcgagtggtacacgagttgaatcccctccaccagtactcgtcccagtaattaagttttttgataagcatttggatctgccaaagaattgtttgtttgtgggtgtgagatttggcagctgctccaagttatatctgatggcaaatggacacggatcaccttgcaagcccatcacaatccctaattcgtttatttttgacacagatacaaactcaggctcaggctcaggcctccagcacttctctccatccaaagcagctaaaccgtatggtgttgttatatctgcatatgggatgctatattactttgcacatccatcatgctccccatgcatcccaggcttgttgttcgagcaatataattccgccactaatttatgggagtacttgccttcttgtccatataagactctaccaaagccaagcatggaggtagctgatgataattgtttcctaggcactcccttgcctttgcaagtaaggaatacctcgaagccaccattcccgatgagggagcagaaaactcagaatttggttcatttggggaggctggacttttgtcttgtacagacaggccggaacgaatattctattgagcatcaatatctttgtatcactgcatttcgaatcctccgtgaaggacgaggaacagaaatcagaaccctaagttcatctatttttcaagtcgacttgatgggcagtggccttttcgaagttaacttcagctttacgccaggttgtgaggatgttgaaccagcagaagaagactactgtccgactgcatcagttaaaagtaaaagtgaaactaccaggatgacatcggaggacgaactaaataaagcagatcggaggttgtatgttgctacaggcagacaagaggacttattttccattccaaccaaagtggcaattcttagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.51

Weight (kDa)

6.46

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AccI GTMKAC 1 cut(s) 807
AciI CCGC 2 cut(s) 22, 486
AclWI GGATC 2 cut(s) 204, 283
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 1 cut(s) 826
AfaI GTAC 4 cut(s) 133, 159, 506, 687
AfiI CCNNNNNNNGG 2 cut(s) 74, 631
AgsI TTSAA 3 cut(s) 143, 803, 872
AjnI CCWGG 3 cut(s) 457, 853, 929
AluBI AGCT 6 cut(s) 122, 240, 380, 557, 846, 1038
AluI AGCT 6 cut(s) 122, 240, 380, 557, 846, 1038
Alw21I GWGCWC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 2 cut(s) 204, 283
AoxI GGCC 3 cut(s) 349, 694, 823
ApaLI GTGCAC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 237, 240, 377
ApoI RAATTY 1 cut(s) 649
AspA2I CCTAGG 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 61, 270
AsuII TTCGAA 2 cut(s) 745, 831
AvaII GGWCC 1 cut(s) 65
AvrII CCTAGG 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 891
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 227, 249, 389
BccI CCATC 5 cut(s) 253, 299, 376, 445, 808
BciT130I CCWGG 3 cut(s) 459, 855, 931
BfaI CTAG 2 cut(s) 575, 1039
BfmI CTRYAG 1 cut(s) 984
BisI GCNGC 3 cut(s) 238, 241, 378
BlnI CCTAGG 1 cut(s) 574
BlsI GCNGC 3 cut(s) 239, 242, 379
BmcAI AGTACT 2 cut(s) 159, 506
Bme1390I CCNGG 3 cut(s) 459, 855, 931
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmrFI CCNGG 3 cut(s) 459, 855, 931
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 4 cut(s) 405, 462, 727, 911
BmuI ACTGGG 1 cut(s) 161
BoxI GACNNNNGTC 2 cut(s) 678, 891
BpiI GAAGAC 1 cut(s) 891
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 2 cut(s) 340, 346
Bpu14I TTCGAA 2 cut(s) 745, 831
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 73, 457, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 631
Bse1I ACTGG 2 cut(s) 155, 167
BseBI CCWGG 3 cut(s) 459, 855, 931
BseDI CCNNGG 3 cut(s) 73, 457, 574
BseGI GGATG 6 cut(s) 368, 420, 433, 453, 871, 939
BseLI CCNNNNNNNGG 2 cut(s) 74, 631
BseMII CTCAG 4 cut(s) 348, 354, 360, 659
BseNI ACTGG 2 cut(s) 155, 167
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 3 cut(s) 227, 249, 389
BshFI GGCC 3 cut(s) 351, 696, 825
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 697
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 74, 631
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 3 cut(s) 351, 696, 825
Bsp119I TTCGAA 2 cut(s) 745, 831
Bsp1286I GDGCHC 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 685
Bsp143I GATC 3 cut(s) 196, 275, 964
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 2 cut(s) 22, 486
BspANI GGCC 3 cut(s) 351, 696, 825
BspCNI CTCAG 4 cut(s) 347, 353, 359, 658
BspPI GGATC 2 cut(s) 204, 283
BspT104I TTCGAA 2 cut(s) 745, 831
BsrGI TGTACA 1 cut(s) 685
BsrI ACTGG 2 cut(s) 155, 167
BssECI CCNNGG 3 cut(s) 73, 457, 574
BssMI GATC 3 cut(s) 196, 275, 964
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 73, 574
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 3 cut(s) 459, 855, 931
Bst4CI ACNGT 2 cut(s) 387, 893
BstAUI TGTACA 1 cut(s) 685
BstBI TTCGAA 2 cut(s) 745, 831
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 6 cut(s) 334, 340, 346, 645, 785, 1034
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 6 cut(s) 368, 420, 433, 453, 871, 939
BstKTI GATC 3 cut(s) 199, 278, 967
BstMBI GATC 3 cut(s) 196, 275, 964
BstMWI GCNNNNNNNGC 2 cut(s) 450, 459
BstNI CCWGG 3 cut(s) 459, 855, 931
BstPAI GACNNNNGTC 2 cut(s) 678, 891
BstSCI CCNGG 3 cut(s) 457, 853, 929
BstSFI CTRYAG 1 cut(s) 984
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 227, 249, 389
BstV2I GAAGAC 1 cut(s) 891
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 3 cut(s) 351, 696, 825
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 6 cut(s) 368, 420, 433, 453, 871, 939
BtsI GCAGTG 2 cut(s) 735, 826
BtsIMutI CAGTG 2 cut(s) 735, 826
Cac8I GCNNGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 4 cut(s) 132, 158, 505, 686
CspCI CAANNNNNGTGG 2 cut(s) 1005, 1040
CviAII CATG 6 cut(s) 37, 74, 104, 441, 450, 547
CviQI GTAC 4 cut(s) 132, 158, 505, 686
DdeI CTNAG 6 cut(s) 334, 340, 346, 645, 785, 1034
DpnI GATC 3 cut(s) 198, 277, 966
DpnII GATC 3 cut(s) 196, 275, 964
EciI GGCGGA 1 cut(s) 475
Eco130I CCWWGG 2 cut(s) 73, 574
Eco147I AGGCCT 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 826
EcoRII CCWGG 3 cut(s) 457, 853, 929
EcoT14I CCWWGG 2 cut(s) 73, 574
EcoT22I ATGCAT 1 cut(s) 455
ErhI CCWWGG 2 cut(s) 73, 574
FaeI CATG 6 cut(s) 40, 77, 107, 444, 453, 550
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 149
FatI CATG 6 cut(s) 36, 73, 103, 440, 449, 546
FauNDI CATATG 1 cut(s) 409
FblI GTMKAC 1 cut(s) 807
Fnu4HI GCNGC 3 cut(s) 238, 241, 378
FokI GGATG 6 cut(s) 355, 420, 427, 440, 878, 946
Fsp4HI GCNGC 3 cut(s) 238, 241, 378
FspBI CTAG 2 cut(s) 575, 1039
GluI GCNGC 3 cut(s) 238, 241, 378
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 3 cut(s) 351, 696, 825
HapII CCGG 1 cut(s) 697
Hin1II CATG 6 cut(s) 40, 77, 107, 444, 453, 550
HincII GTYRAC 2 cut(s) 808, 838
HindII GTYRAC 2 cut(s) 808, 838
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 4 cut(s) 110, 143, 529, 747
HpaI GTTAAC 1 cut(s) 838
HpaII CCGG 1 cut(s) 697
HphI GGTGA 2 cut(s) 61, 270
Hpy166II GTNNAC 5 cut(s) 16, 80, 134, 808, 838
Hpy188I TCNGA 6 cut(s) 258, 648, 779, 897, 943, 969
Hpy188III TCNNGA 1 cut(s) 625
Hpy8I GTNNAC 5 cut(s) 16, 80, 134, 808, 838
HpyAV CCTTC 2 cut(s) 522, 752
HpyCH4III ACNGT 2 cut(s) 387, 893
HpyCH4V TGCA 8 cut(s) 80, 285, 407, 431, 453, 595, 740, 902
HpyF10VI GCNNNNNNNGC 2 cut(s) 450, 459
HpyF3I CTNAG 6 cut(s) 334, 340, 346, 645, 785, 1034
Hsp92II CATG 6 cut(s) 40, 77, 107, 444, 453, 550
KspAI GTTAAC 1 cut(s) 838
Kzo9I GATC 3 cut(s) 196, 275, 964
LmnI GCTCC 3 cut(s) 248, 449, 634
Lsp1109I GCAGC 3 cut(s) 227, 249, 389
LweI GCATC 4 cut(s) 405, 462, 727, 911
MaeI CTAG 2 cut(s) 575, 1039
MalI GATC 3 cut(s) 198, 277, 966
MboI GATC 3 cut(s) 196, 275, 964
MboII GAAGA 2 cut(s) 893, 896
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 8 cut(s) 171, 208, 304, 481, 493, 565, 649, 1029
MlyI GAGTC 1 cut(s) 523
MmeI TCCRAC 2 cut(s) 920, 1040
Mph1103I ATGCAT 1 cut(s) 455
MseI TTAA 3 cut(s) 174, 837, 909
MspA1I CMGCKG 2 cut(s) 22, 240
MspI CCGG 1 cut(s) 697
MspR9I CCNGG 3 cut(s) 459, 855, 931
MvaI CCWGG 3 cut(s) 459, 855, 931
MwoI GCNNNNNNNGC 2 cut(s) 450, 459
NcoI CCATGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 409
NdeII GATC 3 cut(s) 196, 275, 964
NlaIII CATG 6 cut(s) 40, 77, 107, 444, 453, 550
NsiI ATGCAT 1 cut(s) 455
NspV TTCGAA 2 cut(s) 745, 831
PceI AGGCCT 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 751
PfeI GAWTC 3 cut(s) 110, 143, 747
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 3 cut(s) 239, 242, 379
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PshAI GACNNNNGTC 2 cut(s) 678, 891
Psp6I CCWGG 3 cut(s) 457, 853, 929
PspGI CCWGG 3 cut(s) 457, 853, 929
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 4 cut(s) 133, 159, 506, 687
RsaNI GTAC 4 cut(s) 132, 158, 505, 686
SalI GTCGAC 1 cut(s) 806
SaqAI TTAA 3 cut(s) 174, 837, 909
SatI GCNGC 3 cut(s) 238, 241, 378
Sau3AI GATC 3 cut(s) 196, 275, 964
Sau96I GGNCC 1 cut(s) 65
ScaI AGTACT 2 cut(s) 159, 506
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 3 cut(s) 459, 855, 931
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 4 cut(s) 405, 462, 727, 911
SfcI CTRYAG 1 cut(s) 984
SfuI TTCGAA 2 cut(s) 745, 831
SinI GGWCC 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 8 cut(s) 171, 208, 304, 481, 493, 565, 649, 1029
SseBI AGGCCT 1 cut(s) 351
SsiI CCGC 2 cut(s) 22, 486
SspI AATATT 1 cut(s) 707
SspMI CTAG 2 cut(s) 575, 1039
StuI AGGCCT 1 cut(s) 351
StyD4I CCNGG 3 cut(s) 457, 853, 929
StyI CCWWGG 2 cut(s) 73, 574
TaaI ACNGT 2 cut(s) 387, 893
TaqI TCGA 6 cut(s) 125, 471, 611, 745, 807, 831
TasI AATT 8 cut(s) 171, 208, 304, 481, 493, 565, 649, 1029
TatI WGTACW 3 cut(s) 157, 504, 685
TfiI GAWTC 3 cut(s) 110, 143, 747
Tru1I TTAA 3 cut(s) 174, 837, 909
Tru9I TTAA 3 cut(s) 174, 837, 909
TscAI CASTG 2 cut(s) 742, 826
TseI GCWGC 3 cut(s) 237, 240, 377
TspDTI ATGAA 3 cut(s) 102, 647, 780
TspGWI ACGGA 2 cut(s) 288, 743
TspRI CASTG 2 cut(s) 742, 826
Van91I CCANNNNNTGG 1 cut(s) 74
VneI GTGCAC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 1 cut(s) 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmaJI CCTAGG 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 807
XspI CTAG 2 cut(s) 575, 1039
ZrmI AGTACT 2 cut(s) 159, 506
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.