Rh2BG637700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000150
Physical Location & Seq
Reverse (-)
85825391 .. 85826296
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG637700.1

Sequence Viewer

Length: 906 bp
ATGGTGAGATTCAATCGTGGTCCATACCATGGTGCAGTATATAAAGTAAAACTTGAGCATGGAGAATCTGGTGAAGCTTCCGCAGGGGCTGAAGTTGAATCCGCTCTGCCGGTACTTAACCCGGTGTCTACTTTTTTTGATAAGAGTTTTGAGCTCCCGAAGAATTGTTTGTTTGAGGGTGCGAGGTTTGGCTCCAAGTTATATCTAATGGCAAATGGACATGGTTCGCCTTGCAAGCCCGTCACAACCGTCAATTCCTTTGTTTTTGACATGAACTCGAGCTCAGACCTCCAGCAATTCTCTCCGCCCAAAGCTGCTAAACCATTTGGTGCTGTTATATCTGCATATGGGATGCTTTATTATTTTGCACATCCATCAAGCTCCCCACATATCCCAGACCCTTCGTTTGAGCGATATAATCCCACCACTAATTTATGGGAATCCTTGCCTTCCTATCCATATAAGACTCTGCCTAAGCCATGCATGGAGGTAGTAGGTTATGCCGTTTGTTATGGCTACATATTGTTTTCAATGTACAACCGCAAGGAATGTGCAGTGCTAGCTTTTCATATTGGTACAGAAAAATGGCATCAAGTCAAAATCACCAATCCCAGCGAGGCTTCTTCTTATTATCCTTTTCTGGGGAGGGCTGTTGTTGTAGACAATATTATCTATGCCCCGTCTTTTTTCCCAGATGAAGTTATAGCATTCTCTTTTTGGCGAGATTCAGATCATAATTGTTTTCTAGGCACTCATACTCCGCATCCCCCATCCCCGTTAATGGGGAGGATAACTAAAAATTTGGTTCATTTAGGGATGCTGCATTTTTGCCTTGTACAGACTGGCCGGAACCAATGTTCTATTGAGCATCAATATCTTTATCACTACATTTCGAATCCTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

33.81

Weight (kDa)

7.21

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 104
AccI GTMKAC 2 cut(s) 128, 660
AciI CCGC 5 cut(s) 81, 102, 305, 541, 761
AcoI YGGCCR 1 cut(s) 844
AcsI RAATTY 1 cut(s) 799
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 4 cut(s) 114, 536, 577, 837
AfiI CCNNNNNNNGG 4 cut(s) 29, 641, 781, 782
AgsI TTSAA 3 cut(s) 13, 98, 531
AloI GAACNNNNNNTCC 2 cut(s) 841, 873
AluBI AGCT 6 cut(s) 77, 154, 282, 314, 381, 563
AluI AGCT 6 cut(s) 77, 154, 282, 314, 381, 563
Alw21I GWGCWC 2 cut(s) 156, 284
AlwNI CAGNNNCTG 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 277
AoxI GGCC 1 cut(s) 844
ApeKI GCWGC 2 cut(s) 314, 820
ApoI RAATTY 1 cut(s) 799
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 3 cut(s) 16, 83, 595
AsuII TTCGAA 1 cut(s) 893
AsuNHI GCTAGC 1 cut(s) 559
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 1 cut(s) 20
BanII GRGCYC 2 cut(s) 156, 284
Bbv12I GWGCWC 2 cut(s) 156, 284
BbvI GCAGC 2 cut(s) 301, 807
BccI CCATC 2 cut(s) 382, 778
BceAI ACGGC 1 cut(s) 488
BcnI CCSGG 1 cut(s) 122
BfaI CTAG 2 cut(s) 560, 746
BisI GCNGC 2 cut(s) 315, 821
BlsI GCNGC 2 cut(s) 316, 822
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 193, 851
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 5 cut(s) 342, 598, 772, 807, 877
BmtI GCTAGC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 474
Bpu14I TTCGAA 1 cut(s) 893
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 903
BsaBI GATNNNNATC 1 cut(s) 729
BsaJI CCNNGG 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 742, 772
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 641, 781, 782
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 847
Bse8I GATNNNNATC 1 cut(s) 729
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 5 cut(s) 357, 370, 763, 770, 822
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 4 cut(s) 29, 641, 781, 782
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 847
BseXI GCAGC 2 cut(s) 301, 807
BseYI CCCAGC 1 cut(s) 611
BsgI GTGCAG 2 cut(s) 54, 573
BshFI GGCC 1 cut(s) 846
BsiHKAI GWGCWC 2 cut(s) 156, 284
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 3 cut(s) 110, 122, 847
BslI CCNNNNNNNGG 4 cut(s) 29, 641, 781, 782
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 1 cut(s) 846
BsoBI CYCGRG 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 893
Bsp1286I GDGCHC 2 cut(s) 156, 284
Bsp1407I TGTACA 2 cut(s) 534, 835
Bsp143I GATC 1 cut(s) 730
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 5 cut(s) 81, 102, 305, 541, 761
BspANI GGCC 1 cut(s) 846
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 193, 851
BspOI GCTAGC 1 cut(s) 563
BspT104I TTCGAA 1 cut(s) 893
BsrBI CCGCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 109
BsrGI TGTACA 2 cut(s) 534, 835
BsrI ACTGG 1 cut(s) 847
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 1 cut(s) 730
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 250
BstAUI TGTACA 2 cut(s) 534, 835
BstBAI YACGTR 1 cut(s) 903
BstBI TTCGAA 1 cut(s) 893
BstC8I GCNNGC 2 cut(s) 236, 561
BstDEI CTNAG 2 cut(s) 283, 474
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 5 cut(s) 357, 370, 763, 770, 822
BstKTI GATC 1 cut(s) 733
BstMBI GATC 1 cut(s) 730
BstMWI GCNNNNNNNGC 2 cut(s) 235, 560
BstSCI CCNGG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 301, 807
BsuRI GGCC 1 cut(s) 846
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 5 cut(s) 357, 370, 763, 770, 822
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 2 cut(s) 236, 561
CaiI CAGNNNCTG 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 4 cut(s) 113, 535, 576, 836
CviAII CATG 6 cut(s) 29, 59, 221, 271, 480, 484
CviQI GTAC 4 cut(s) 113, 535, 576, 836
DdeI CTNAG 2 cut(s) 283, 474
DpnI GATC 1 cut(s) 732
DpnII GATC 1 cut(s) 730
EaeI YGGCCR 1 cut(s) 844
EciI GGCGGA 1 cut(s) 294
Ecl136II GAGCTC 2 cut(s) 154, 282
Eco130I CCWWGG 1 cut(s) 28
Eco24I GRGCYC 2 cut(s) 156, 284
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 2 cut(s) 154, 282
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 277
EcoICRI GAGCTC 2 cut(s) 154, 282
EcoT14I CCWWGG 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 485
EcoT38I GRGCYC 2 cut(s) 156, 284
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 6 cut(s) 32, 62, 224, 274, 483, 487
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 6 cut(s) 28, 58, 220, 270, 479, 483
FauNDI CATATG 1 cut(s) 346
FblI GTMKAC 2 cut(s) 128, 660
Fnu4HI GCNGC 2 cut(s) 315, 821
FokI GGATG 5 cut(s) 357, 364, 750, 757, 829
FriOI GRGCYC 2 cut(s) 156, 284
Fsp4HI GCNGC 2 cut(s) 315, 821
FspBI CTAG 2 cut(s) 560, 746
GluI GCNGC 2 cut(s) 315, 821
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 1 cut(s) 846
HapII CCGG 3 cut(s) 110, 122, 847
Hin1II CATG 6 cut(s) 32, 62, 224, 274, 483, 487
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 7 cut(s) 9, 65, 98, 440, 466, 725, 895
HpaII CCGG 3 cut(s) 110, 122, 847
HphI GGTGA 3 cut(s) 16, 83, 595
Hpy166II GTNNAC 2 cut(s) 129, 661
Hpy188I TCNGA 2 cut(s) 286, 730
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 129, 661
HpyAV CCTTC 2 cut(s) 411, 459
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 902
HpyCH4V TGCA 7 cut(s) 35, 234, 344, 368, 483, 554, 823
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 560
HpyF3I CTNAG 2 cut(s) 283, 474
HpySE526I ACGT 1 cut(s) 902
Hsp92II CATG 6 cut(s) 32, 62, 224, 274, 483, 487
Kzo9I GATC 1 cut(s) 730
LmnI GCTCC 3 cut(s) 159, 197, 386
Lsp1109I GCAGC 2 cut(s) 301, 807
LweI GCATC 5 cut(s) 342, 598, 772, 807, 877
MaeI CTAG 2 cut(s) 560, 746
MaeII ACGT 1 cut(s) 902
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 732
MbiI CCGCTC 1 cut(s) 104
MboI GATC 1 cut(s) 730
MboII GAAGA 2 cut(s) 172, 615
MhlI GDGCHC 2 cut(s) 156, 284
MluCI AATT 6 cut(s) 163, 253, 296, 430, 736, 799
MlyI GAGTC 1 cut(s) 460
MnlI CCTC 7 cut(s) 169, 177, 299, 481, 610, 639, 780
Mph1103I ATGCAT 1 cut(s) 485
MseI TTAA 2 cut(s) 117, 779
MspI CCGG 3 cut(s) 110, 122, 847
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 707
MwoI GCNNNNNNNGC 2 cut(s) 235, 560
NciI CCSGG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 28
NdeI CATATG 1 cut(s) 346
NdeII GATC 1 cut(s) 730
NheI GCTAGC 1 cut(s) 559
NlaIII CATG 6 cut(s) 32, 62, 224, 274, 483, 487
NlaIV GGNNCC 2 cut(s) 193, 851
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 485
NspV TTCGAA 1 cut(s) 893
PaeR7I CTCGAG 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 899
PctI GAATGC 1 cut(s) 707
PfeI GAWTC 6 cut(s) 9, 65, 98, 440, 725, 895
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 2 cut(s) 316, 822
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Ppu21I YACGTR 1 cut(s) 903
Psp124BI GAGCTC 2 cut(s) 156, 284
PspFI CCCAGC 1 cut(s) 611
PspN4I GGNNCC 2 cut(s) 193, 851
PspPI GGNCC 1 cut(s) 20
PspXI VCTCGAGB 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 89
RsaI GTAC 4 cut(s) 114, 536, 577, 837
RsaNI GTAC 4 cut(s) 113, 535, 576, 836
SacI GAGCTC 2 cut(s) 156, 284
SaqAI TTAA 2 cut(s) 117, 779
SatI GCNGC 2 cut(s) 315, 821
Sau3AI GATC 1 cut(s) 730
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 2 cut(s) 156, 284
SfaNI GCATC 5 cut(s) 342, 598, 772, 807, 877
Sfr274I CTCGAG 1 cut(s) 277
SfuI TTCGAA 1 cut(s) 893
SinI GGWCC 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 277
SmlI CTYRAG 2 cut(s) 53, 277
SmoI CTYRAG 2 cut(s) 53, 277
Sse9I AATT 6 cut(s) 163, 253, 296, 430, 736, 799
SsiI CCGC 5 cut(s) 81, 102, 305, 541, 761
SspI AATATT 1 cut(s) 667
SspMI CTAG 2 cut(s) 560, 746
SstI GAGCTC 2 cut(s) 156, 284
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 905
TaqI TCGA 2 cut(s) 278, 893
TasI AATT 6 cut(s) 163, 253, 296, 430, 736, 799
TatI WGTACW 2 cut(s) 534, 835
TfiI GAWTC 6 cut(s) 9, 65, 98, 440, 725, 895
Tru1I TTAA 2 cut(s) 117, 779
Tru9I TTAA 2 cut(s) 117, 779
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 314, 820
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 287, 557, 711, 797
TspRI CASTG 1 cut(s) 561
Van91I CCANNNNNTGG 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 799
XhoI CTCGAG 1 cut(s) 277
XmiI GTMKAC 2 cut(s) 128, 660
XspI CTAG 2 cut(s) 560, 746
Zsp2I ATGCAT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.