RLG00000026396

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000150
Physical Location & Seq
Reverse (-)
2767964 .. 2769241
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026396

Sequence Viewer

Length: 1278 bp
ATGGAGATGATAGAAAACAATCGGGAAGCTGAATCCGTATTTGTTATGGTGGAGTTCGATCAAAATGATTCCTATACTGGTGGTATATACGAAATCAAACTTGACCAACTTCAGCAACTTGAGCGTGGTAAATCTGTGGGCGGACCTGACACTGATCCTTCGACTCTACCAATGCTCGAACCTGTATTAAAGTTCTTTGATGAAAGCTGGAAGATGGAGGGGCTATGTTTACTTGATGGTGCTAGATTTGGCAGCCTCTCCAAGTTATATATTATGGTAAATCAAATCCCATGGGATTATCTCAAGCCCGTCACACCCAAGCACGCATTTTTCTTCGACACATCAAGCTTAGAACTGCAGAAGGTTTCTCCACCCAAAACATCTAAGGAGTATTGTCTTGTCATATCAGCATATGGAATGATGTACTATCTTGCAGAACCAATGTGCTTTCCTCAGATTCAAGAACCATCATTCGAGCGATATGATCCGTCAAGTGATTCATGGGAGTCCTTGCCTCCTTTTCCAGATTATTCTCTGGATCAGGCACAGACCGAGATGACCGGTTATGCCGTTTGTTATGGATATATACTGTTGTCCATGCGAACTGAGAAGAAATATGAAGCGGCGGCTTTTCATATTCGTAGCAGAACATGGCACAAGGTCAAAATTAGTCCAGAGAATCCTTATTATTATCCTTTCTACGGGAGGGCTGTGGTTGTAGGTGACACTATCTATGCCTTGGCACATAGTCTGAATTTGATTCTAGTATTCTCTTTTTGGTGGGATTCAGATGAGGATGGTGATATTGCCAAGCGTCGACATTTTTTGGGCACTCCATTGTCTTTGATATTAAAGGACAAGTATCATCCTCCGTGCCTGTTAATAGGGTTTAGGACTCAAAGGTTGGTTCATTTAGGGAGACGGTACTTCTGTGTTGTACAGACCGGTCTAAACAATGATTCTCTTGAGTATCAGTACCTTTGTGTGACGACTTTTAGAATTGCCGGTCAAGGGCAAGATATGAACATCGAGACTGTTCGGTCATCCATTTTCCGCATAGCGATTGAAGGAAATCACGAATTTGAAATCAAGTTCAGCTTCACGCCTGATTATAAAGACATTGAACCGGAAGAAGAAGAGTATAGCGCAACTAATGCACTGCCTGAAAGTAAAAGTGCTGCATGGACTTCGAAGGTGGAAGAAGACTTCTTTTCCTTTCCAACTGGTCCTAAACTAGGATTGGAGGCATTTAGAACCAAAAAAGAAGATGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

49.1

Weight (kDa)

4.95

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 95 - 334 1.2e-08 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1113
AasI GACNNNNNNGTC 1 cut(s) 1039
AccI GTMKAC 1 cut(s) 817
AciI CCGC 4 cut(s) 141, 623, 626, 1054
AclWI GGATC 3 cut(s) 149, 479, 546
AcsI RAATTY 2 cut(s) 754, 1079
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 4 cut(s) 425, 926, 939, 977
AfiI CCNNNNNNNGG 3 cut(s) 701, 1011, 1235
AgeI ACCGGT 2 cut(s) 560, 944
AgsI TTSAA 4 cut(s) 461, 1067, 1085, 1124
AluBI AGCT 4 cut(s) 29, 207, 348, 1098
AluI AGCT 4 cut(s) 29, 207, 348, 1098
Alw26I GTCTC 2 cut(s) 913, 1025
AlwI GGATC 3 cut(s) 149, 479, 546
ApeKI GCWGC 2 cut(s) 252, 1178
ApoI RAATTY 2 cut(s) 754, 1079
AsiGI ACCGGT 2 cut(s) 560, 944
AspLEI GCGC 1 cut(s) 1148
AspS9I GGNCC 2 cut(s) 143, 1226
AsuHPI GGTGA 2 cut(s) 734, 812
AsuII TTCGAA 1 cut(s) 1190
AvaII GGWCC 2 cut(s) 143, 1226
BaeGI GKGCMC 1 cut(s) 833
BaeI ACNNNNGTAYC 2 cut(s) 916, 949
BbsI GAAGAC 1 cut(s) 1209
BbvI GCAGC 2 cut(s) 264, 1165
BccI CCATC 4 cut(s) 208, 230, 475, 791
BceAI ACGGC 1 cut(s) 554
BcgI CGANNNNNNTGC 2 cut(s) 1170, 1204
BcoDI GTCTC 2 cut(s) 913, 1025
BfaI CTAG 3 cut(s) 243, 764, 1235
BfmI CTRYAG 1 cut(s) 356
BisI GCNGC 4 cut(s) 253, 624, 627, 1179
BlsI GCNGC 4 cut(s) 254, 625, 628, 1180
Bme18I GGWCC 2 cut(s) 143, 1226
BmgT120I GGNCC 2 cut(s) 143, 1226
BpiI GAAGAC 1 cut(s) 1209
Bpu14I TTCGAA 1 cut(s) 1190
BpuEI CTTGAG 3 cut(s) 140, 287, 986
BsaJI CCNNGG 2 cut(s) 290, 738
BsaWI WCCGGW 3 cut(s) 560, 944, 1126
Bsc4I CCNNNNNNNGG 3 cut(s) 701, 1011, 1235
Bse118I RCCGGY 3 cut(s) 560, 944, 1004
Bse1I ACTGG 2 cut(s) 82, 1228
BseDI CCNNGG 2 cut(s) 290, 738
BseGI GGATG 3 cut(s) 802, 865, 1043
BseLI CCNNNNNNNGG 3 cut(s) 701, 1011, 1235
BseMII CTCAG 2 cut(s) 467, 597
BseNI ACTGG 2 cut(s) 82, 1228
BseSI GKGCMC 1 cut(s) 833
BseXI GCAGC 2 cut(s) 264, 1165
BshTI ACCGGT 2 cut(s) 560, 944
BsiSI CCGG 4 cut(s) 561, 945, 1005, 1127
BslI CCNNNNNNNGG 3 cut(s) 701, 1011, 1235
BsmAI GTCTC 2 cut(s) 913, 1025
BsmBI CGTCTC 1 cut(s) 913
Bsp119I TTCGAA 1 cut(s) 1190
Bsp1286I GDGCHC 1 cut(s) 833
Bsp1407I TGTACA 1 cut(s) 937
Bsp143I GATC 4 cut(s) 58, 154, 484, 538
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 4 cut(s) 141, 623, 626, 1054
BspCNI CTCAG 2 cut(s) 466, 598
BspMAI CTGCAG 1 cut(s) 360
BspPI GGATC 3 cut(s) 149, 479, 546
BspT104I TTCGAA 1 cut(s) 1190
BsrFI RCCGGY 3 cut(s) 560, 944, 1004
BsrGI TGTACA 1 cut(s) 937
BsrI ACTGG 2 cut(s) 82, 1228
BssAI RCCGGY 3 cut(s) 560, 944, 1004
BssECI CCNNGG 2 cut(s) 290, 738
BssMI GATC 4 cut(s) 58, 154, 484, 538
BssT1I CCWWGG 2 cut(s) 290, 738
Bst4CI ACNGT 3 cut(s) 591, 924, 1036
Bst6I CTCTTC 1 cut(s) 1131
BstAPI GCANNNNNTGC 1 cut(s) 1154
BstAUI TGTACA 1 cut(s) 937
BstBI TTCGAA 1 cut(s) 1190
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 4 cut(s) 349, 384, 453, 606
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 1233
BstF5I GGATG 3 cut(s) 802, 865, 1043
BstHHI GCGC 1 cut(s) 1148
BstKTI GATC 4 cut(s) 61, 157, 487, 541
BstMAI GTCTC 2 cut(s) 913, 1025
BstMBI GATC 4 cut(s) 58, 154, 484, 538
BstMWI GCNNNNNNNGC 2 cut(s) 121, 1154
BstSFI CTRYAG 1 cut(s) 356
BstSLI GKGCMC 1 cut(s) 833
BstV1I GCAGC 2 cut(s) 264, 1165
BstV2I GAAGAC 1 cut(s) 1209
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 3 cut(s) 802, 865, 1043
BtsI GCAGTG 1 cut(s) 1157
BtsIMutI CAGTG 2 cut(s) 150, 1157
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 1148
Cfr10I RCCGGY 3 cut(s) 560, 944, 1004
Cfr13I GGNCC 2 cut(s) 143, 1226
CseI GACGC 1 cut(s) 803
Csp6I GTAC 4 cut(s) 424, 925, 938, 976
CspAI ACCGGT 2 cut(s) 560, 944
CviAII CATG 5 cut(s) 291, 501, 598, 651, 1182
CviJI RGCY 9 cut(s) 29, 207, 223, 255, 307, 348, 629, 710, 1098
CviKI_1 RGCY 9 cut(s) 29, 207, 223, 255, 307, 348, 629, 710, 1098
CviQI GTAC 4 cut(s) 424, 925, 938, 976
DdeI CTNAG 4 cut(s) 349, 384, 453, 606
DpnI GATC 4 cut(s) 60, 156, 486, 540
DpnII GATC 4 cut(s) 58, 154, 484, 538
DrdI GACNNNNNNGTC 1 cut(s) 1039
DseDI GACNNNNNNGTC 1 cut(s) 1039
Eam1104I CTCTTC 1 cut(s) 1131
EarI CTCTTC 1 cut(s) 1131
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 290, 738
Eco47I GGWCC 2 cut(s) 143, 1226
Eco57I CTGAAG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 1233
EcoT14I CCWWGG 2 cut(s) 290, 738
ErhI CCWWGG 2 cut(s) 290, 738
Esp3I CGTCTC 1 cut(s) 913
FaeI CATG 5 cut(s) 294, 504, 601, 654, 1185
FalI AAGNNNNNCTT 2 cut(s) 1082, 1114
FatI CATG 5 cut(s) 290, 500, 597, 650, 1181
FauNDI CATATG 1 cut(s) 412
FblI GTMKAC 1 cut(s) 817
Fnu4HI GCNGC 4 cut(s) 253, 624, 627, 1179
FokI GGATG 3 cut(s) 809, 852, 1030
Fsp4HI GCNGC 4 cut(s) 253, 624, 627, 1179
FspBI CTAG 3 cut(s) 243, 764, 1235
GlaI GCGC 1 cut(s) 1147
GluI GCNGC 4 cut(s) 253, 624, 627, 1179
HapII CCGG 4 cut(s) 561, 945, 1005, 1127
HgaI GACGC 1 cut(s) 803
HhaI GCGC 1 cut(s) 1148
Hin1II CATG 5 cut(s) 294, 504, 601, 654, 1185
Hin6I GCGC 1 cut(s) 1146
HinP1I GCGC 1 cut(s) 1146
HincII GTYRAC 1 cut(s) 818
HindII GTYRAC 1 cut(s) 818
HindIII AAGCTT 1 cut(s) 346
HpaII CCGG 4 cut(s) 561, 945, 1005, 1127
HphI GGTGA 2 cut(s) 734, 812
Hpy166II GTNNAC 2 cut(s) 230, 818
Hpy188I TCNGA 3 cut(s) 456, 753, 790
Hpy188III TCNNGA 8 cut(s) 23, 461, 524, 536, 674, 965, 1030, 1076
Hpy8I GTNNAC 2 cut(s) 230, 818
Hpy99I CGWCG 1 cut(s) 819
HpyAV CCTTC 4 cut(s) 168, 355, 1061, 1186
HpyCH4III ACNGT 3 cut(s) 591, 924, 1036
HpyCH4V TGCA 4 cut(s) 358, 434, 1157, 1181
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 1154
HpyF3I CTNAG 4 cut(s) 349, 384, 453, 606
Hsp92II CATG 5 cut(s) 294, 504, 601, 654, 1185
HspAI GCGC 1 cut(s) 1146
Kzo9I GATC 4 cut(s) 58, 154, 484, 538
Lsp1109I GCAGC 2 cut(s) 264, 1165
MaeI CTAG 3 cut(s) 243, 764, 1235
MaeIII GTNAC 3 cut(s) 310, 722, 985
MalI GATC 4 cut(s) 60, 156, 486, 540
MboI GATC 4 cut(s) 58, 154, 484, 538
MboII GAAGA 9 cut(s) 223, 325, 622, 1142, 1145, 1148, 1211, 1214, 1277
MhlI GDGCHC 1 cut(s) 833
MluCI AATT 4 cut(s) 666, 754, 999, 1079
MlyI GAGTC 3 cut(s) 157, 515, 889
MmeI TCCRAC 1 cut(s) 1244
MnlI CCTC 8 cut(s) 211, 266, 462, 525, 699, 787, 879, 1237
MseI TTAA 3 cut(s) 188, 851, 881
MspI CCGG 4 cut(s) 561, 945, 1005, 1127
MwoI GCNNNNNNNGC 2 cut(s) 121, 1154
NcoI CCATGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 412
NdeII GATC 4 cut(s) 58, 154, 484, 538
NlaIII CATG 5 cut(s) 294, 504, 601, 654, 1185
NmuCI GTSAC 3 cut(s) 310, 722, 985
NspV TTCGAA 1 cut(s) 1190
PfeI GAWTC 8 cut(s) 32, 68, 457, 497, 679, 760, 785, 959
PinAI ACCGGT 2 cut(s) 560, 944
PkrI GCNGC 4 cut(s) 254, 625, 628, 1180
PleI GAGTC 3 cut(s) 157, 514, 889
PpsI GAGTC 3 cut(s) 157, 514, 889
PsiI TTATAA 1 cut(s) 1113
PspPI GGNCC 2 cut(s) 143, 1226
PstI CTGCAG 1 cut(s) 360
RsaI GTAC 4 cut(s) 425, 926, 939, 977
RsaNI GTAC 4 cut(s) 424, 925, 938, 976
SalI GTCGAC 1 cut(s) 816
SaqAI TTAA 3 cut(s) 188, 851, 881
SatI GCNGC 4 cut(s) 253, 624, 627, 1179
Sau3AI GATC 4 cut(s) 58, 154, 484, 538
Sau96I GGNCC 2 cut(s) 143, 1226
SchI GAGTC 3 cut(s) 157, 515, 889
SduI GDGCHC 1 cut(s) 833
SfcI CTRYAG 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 1190
SinI GGWCC 2 cut(s) 143, 1226
SmlI CTYRAG 3 cut(s) 119, 302, 965
SmoI CTYRAG 3 cut(s) 119, 302, 965
Sse9I AATT 4 cut(s) 666, 754, 999, 1079
SsiI CCGC 4 cut(s) 141, 623, 626, 1054
SspMI CTAG 3 cut(s) 243, 764, 1235
StyI CCWWGG 2 cut(s) 290, 738
TaaI ACNGT 3 cut(s) 591, 924, 1036
TaqI TCGA 8 cut(s) 57, 161, 177, 336, 474, 817, 1029, 1190
TaqII GACCGA 2 cut(s) 566, 1029
TasI AATT 4 cut(s) 666, 754, 999, 1079
TatI WGTACW 2 cut(s) 423, 937
TauI GCSGC 2 cut(s) 626, 629
TfiI GAWTC 8 cut(s) 32, 68, 457, 497, 679, 760, 785, 959
Tru1I TTAA 3 cut(s) 188, 851, 881
Tru9I TTAA 3 cut(s) 188, 851, 881
TscAI CASTG 2 cut(s) 157, 1164
TseFI GTSAC 3 cut(s) 310, 722, 985
TseI GCWGC 2 cut(s) 252, 1178
Tsp45I GTSAC 3 cut(s) 310, 722, 985
TspDTI ATGAA 6 cut(s) 216, 489, 623, 633, 899, 1037
TspGWI ACGGA 3 cut(s) 25, 477, 861
TspRI CASTG 2 cut(s) 157, 1164
VpaK11BI GGWCC 2 cut(s) 143, 1226
XagI CCTNNNNNAGG 1 cut(s) 1233
XapI RAATTY 2 cut(s) 754, 1079
XmiI GTMKAC 1 cut(s) 817
XspI CTAG 3 cut(s) 243, 764, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.