Rroxscaffold_3G00227790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000150
Physical Location & Seq
Forward (+)
12050923 .. 12072856
21934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227790.1

Sequence Viewer

Length: 735 bp
ATGACAAAAAATAAGGGCAAATCCGGAAAATCACTTCTTGTAAATCCGCTAACAGCGCAGAAAATCGATGAGAATTGGAAGGCCAGGTTGACGAGAGACTTGGTCTCGGTGAGCATGTCCGAGACGGTGATTGGGACAGGAAGATGTTTGGAAGGAGATGGGCTTGTGGAGAGAAGGGATGAAAACCTTATATATGCCATGACCATAGTGGAGATACCGCACGGGTGGGAAAGACCACATGCGGTGAGGAGGATTGCACGGGTGGGAAAGACCACATGCAATGGGAATAGTAATGGTTGTGGGAAAGACCACCGTGGGGATAACTGCACCGGTGGGAAAGACCACATGCACCGAGCCAAAAGCAGCCAAACGGTGCGGCTAAGCCTAGCCGAGTCAAAGCGCAAATGTTTGCATTACAGCAGTCACTATTTTCTCGGACAAATCGACGGCAATCAACTTAGTGACTACCAAGTCATAACTGATCATAAGAAAACGAAACCGAAACGGCGAAACCAGCAGAAATATCTACTCAACATTAAGGCGAAATCATTGGATTGCTGTGGAGATGAACGACCTAGAGCAAAGACCATTCTTTCTGGGTTGCCTAAGTCTTTGATTGTATCTCCGATGGTAGCGGTGCTCTTTGGAAGGTTGACTGACACTGTTTTTAGTGAAGTCAAACGCGCAGAGAGTTCAAGCTGGAGATCGAAAAGATGTAGGAGATGTTACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

27.53

Weight (kDa)

9.95

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 470
AccII CGCG 1 cut(s) 684
AccIII TCCGGA 1 cut(s) 23
AciI CCGC 5 cut(s) 47, 218, 242, 376, 635
AfiI CCNNNNNNNGG 1 cut(s) 316
AgeI ACCGGT 1 cut(s) 329
AgsI TTSAA 1 cut(s) 696
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 1 cut(s) 699
AluI AGCT 1 cut(s) 699
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 3 cut(s) 90, 109, 116
Aor13HI TCCGGA 1 cut(s) 23
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 363
AsiGI ACCGGT 1 cut(s) 329
AspLEI GCGC 3 cut(s) 58, 402, 686
AsuHPI GGTGA 3 cut(s) 121, 139, 256
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 152, 622
BceAI ACGGC 2 cut(s) 463, 521
BciT130I CCWGG 1 cut(s) 85
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 3 cut(s) 90, 109, 116
BfaI CTAG 2 cut(s) 386, 576
BisI GCNGC 2 cut(s) 364, 377
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 2 cut(s) 365, 378
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 721
Bpu1102I GCTNAGC 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 2 cut(s) 23, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 286
BseAI TCCGGA 1 cut(s) 23
BseBI CCWGG 1 cut(s) 85
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 375
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 684
BshFI GGCC 1 cut(s) 83
BshTI ACCGGT 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 2 cut(s) 24, 330
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 3 cut(s) 90, 109, 116
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 642
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 2 cut(s) 481, 704
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 5 cut(s) 47, 218, 242, 376, 635
BspANI GGCC 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 23
BspFNI CGCG 1 cut(s) 684
BspTNI GGTCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 2 cut(s) 481, 704
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 4 cut(s) 127, 314, 373, 664
BstDEI CTNAG 3 cut(s) 380, 458, 606
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 684
BstHHI GCGC 3 cut(s) 58, 402, 686
BstKTI GATC 2 cut(s) 484, 707
BstMAI GTCTC 3 cut(s) 90, 109, 116
BstMBI GATC 2 cut(s) 481, 704
BstMWI GCNNNNNNNGC 2 cut(s) 55, 514
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 4 cut(s) 118, 242, 279, 349
BstSCI CCNGG 1 cut(s) 83
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 1 cut(s) 375
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 1 cut(s) 83
BsuTUI ATCGAT 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 660
CfoI GCGC 3 cut(s) 58, 402, 686
Cfr10I RCCGGY 1 cut(s) 329
ClaI ATCGAT 1 cut(s) 66
CspAI ACCGGT 1 cut(s) 329
CviAII CATG 5 cut(s) 115, 199, 239, 276, 346
CviJI RGCY 8 cut(s) 83, 163, 356, 366, 379, 384, 389, 699
CviKI_1 RGCY 8 cut(s) 83, 163, 356, 366, 379, 384, 389, 699
DdeI CTNAG 3 cut(s) 380, 458, 606
DpnI GATC 2 cut(s) 483, 706
DpnII GATC 2 cut(s) 481, 704
DrdI GACNNNNNNGTC 1 cut(s) 470
DseDI GACNNNNNNGTC 1 cut(s) 470
Eco31I GGTCTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 83
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 5 cut(s) 118, 202, 242, 279, 349
FaqI GGGAC 1 cut(s) 148
FatI CATG 5 cut(s) 114, 198, 238, 275, 345
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 364, 377
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 364, 377
FspBI CTAG 2 cut(s) 386, 576
GlaI GCGC 3 cut(s) 57, 401, 685
GluI GCNGC 2 cut(s) 364, 377
GsuI CTGGAG 1 cut(s) 721
HaeIII GGCC 1 cut(s) 83
HapII CCGG 2 cut(s) 24, 330
HhaI GCGC 3 cut(s) 58, 402, 686
Hin1II CATG 5 cut(s) 118, 202, 242, 279, 349
Hin6I GCGC 3 cut(s) 56, 400, 684
HinP1I GCGC 3 cut(s) 56, 400, 684
HincII GTYRAC 2 cut(s) 90, 654
HindII GTYRAC 2 cut(s) 90, 654
HinfI GANTC 1 cut(s) 392
HpaII CCGG 2 cut(s) 24, 330
HphI GGTGA 3 cut(s) 121, 139, 256
Hpy166II GTNNAC 2 cut(s) 90, 654
Hpy188I TCNGA 3 cut(s) 121, 437, 627
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 2 cut(s) 90, 654
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 4 cut(s) 73, 146, 168, 642
HpyCH4III ACNGT 4 cut(s) 127, 314, 373, 664
HpyCH4V TGCA 5 cut(s) 257, 279, 327, 349, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 514
HpyF3I CTNAG 3 cut(s) 380, 458, 606
Hsp92II CATG 5 cut(s) 118, 202, 242, 279, 349
HspAI GCGC 3 cut(s) 56, 400, 684
Kpn2I TCCGGA 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 2 cut(s) 481, 704
LpnPI CCDG 8 cut(s) 37, 70, 97, 123, 343, 527, 582, 685
Lsp1109I GCAGC 1 cut(s) 375
MaeI CTAG 2 cut(s) 386, 576
MaeIII GTNAC 3 cut(s) 422, 461, 725
MalI GATC 2 cut(s) 483, 706
MboI GATC 2 cut(s) 481, 704
MboII GAAGA 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 1 cut(s) 73
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 2 cut(s) 240, 243
MroI TCCGGA 1 cut(s) 23
MseI TTAA 1 cut(s) 537
MspI CCGG 2 cut(s) 24, 330
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 2 cut(s) 55, 514
NdeII GATC 2 cut(s) 481, 704
NlaIII CATG 5 cut(s) 118, 202, 242, 279, 349
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 422, 461
NspI RCATGY 4 cut(s) 118, 242, 279, 349
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PflFI GACNNNGTC 1 cut(s) 101
PinAI ACCGGT 1 cut(s) 329
PkrI GCNGC 2 cut(s) 365, 378
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 2 cut(s) 364, 377
Sau3AI GATC 2 cut(s) 481, 704
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 642
SetI ASST 5 cut(s) 89, 189, 577, 653, 701
SgrAI CRCCGGYG 1 cut(s) 329
Sse9I AATT 1 cut(s) 73
SsiI CCGC 5 cut(s) 47, 218, 242, 376, 635
SspMI CTAG 2 cut(s) 386, 576
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 4 cut(s) 127, 314, 373, 664
TaqI TCGA 3 cut(s) 66, 444, 707
TasI AATT 1 cut(s) 73
TauI GCSGC 1 cut(s) 379
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 2 cut(s) 422, 461
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 2 cut(s) 422, 461
TspDTI ATGAA 2 cut(s) 195, 582
TspRI CASTG 1 cut(s) 667
Tth111I GACNNNGTC 1 cut(s) 101
XceI RCATGY 4 cut(s) 118, 242, 279, 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 2 cut(s) 386, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.