MD14G1191600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000150
Physical Location & Seq
Reverse (-)
28255440 .. 28267314
11875 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1191600.v1.1.491

Sequence Viewer

Length: 513 bp
ATGACTTTGGACCATCTGAGTTCGTGCTTTTTTCACATTGCCAGTGAAACATGGCACCCAGTTTACGTACCTACAGTTGATGATGATATGACTGGTACTAAGCCTTATCCTTCTTTTGTGGGGAGGGCTGTCGTCGTAAACGATGTTATCTACGCCGCATCTACAGTGAGCGGGGTTATCATATCATTCTCTCTTGGGATGGATTCAGATCCTAGTGGTCGCATTCTCTTTACCGTAAAGAATCTATTCAAGTTTCCGGAGTTCACAAGTTTCCTTGAGTTGGACAACACTGTAACAGAGTCTTTGGTTCATTTGGGGGAATTAAGATTTTGTCTCCTGCAAACTTTCTTTTGCAGCAGGGGCAGGGGATTTCAACCTCTGTGGATCACAACATTAGAAATTGTCAATGACGGTTCAGGGGAAAGGTGTATCAAGACTTTATGTTCTGTTGGTCGTGACATTGATATTCAGATTTCTGGTGGATTCGAACTTGGTTACTGCTTCACACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.87

Weight (kDa)

4.79

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AccBSI CCGCTC 1 cut(s) 171
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 2 cut(s) 156, 171
AclWI GGATC 2 cut(s) 203, 392
AfaI GTAC 2 cut(s) 69, 97
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 2 cut(s) 250, 374
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 203, 392
Aor13HI TCCGGA 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 10
AsuII TTCGAA 1 cut(s) 486
AvaII GGWCC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 366
BccI CCATC 2 cut(s) 21, 193
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 72, 162
BisI GCNGC 2 cut(s) 156, 355
BlsI GCNGC 2 cut(s) 157, 356
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 3 cut(s) 42, 59, 97
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 256
BseGI GGATG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 3 cut(s) 42, 59, 97
BseXI GCAGC 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 222
Bsp119I TTCGAA 1 cut(s) 486
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 2 cut(s) 208, 384
BspACI CCGC 2 cut(s) 156, 171
BspCNI CTCAG 1 cut(s) 9
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 2 cut(s) 203, 392
BspT104I TTCGAA 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 36
BsrI ACTGG 3 cut(s) 42, 59, 97
BssMI GATC 2 cut(s) 208, 384
Bst4CI ACNGT 5 cut(s) 76, 166, 235, 292, 413
BstBAI YACGTR 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 486
BstDEI CTNAG 2 cut(s) 17, 99
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 2 cut(s) 211, 387
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 2 cut(s) 208, 384
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstSFI CTRYAG 2 cut(s) 72, 162
BstSNI TACGTA 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 49, 171, 288
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 68, 96
CspCI CAANNNNNGTGG 2 cut(s) 362, 397
CviAII CATG 2 cut(s) 51, 510
CviJI RGCY 2 cut(s) 103, 128
CviKI_1 RGCY 2 cut(s) 103, 128
CviQI GTAC 2 cut(s) 68, 96
DdeI CTNAG 2 cut(s) 17, 99
DpnI GATC 2 cut(s) 210, 386
DpnII GATC 2 cut(s) 208, 384
Eco105I TACGTA 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 10
FaeI CATG 2 cut(s) 54, 513
FaiI YATR 5 cut(s) 52, 89, 182, 442, 511
FatI CATG 2 cut(s) 50, 509
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 156, 355
FokI GGATG 1 cut(s) 211
Fsp4HI GCNGC 2 cut(s) 156, 355
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 156, 355
HapII CCGG 1 cut(s) 257
Hin1II CATG 2 cut(s) 54, 513
HinfI GANTC 4 cut(s) 203, 241, 299, 483
HpaII CCGG 1 cut(s) 257
Hpy166II GTNNAC 3 cut(s) 64, 139, 264
Hpy188I TCNGA 3 cut(s) 18, 208, 471
Hpy188III TCNNGA 3 cut(s) 257, 433, 455
Hpy8I GTNNAC 3 cut(s) 64, 139, 264
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 5 cut(s) 76, 166, 235, 292, 413
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 340, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 2 cut(s) 17, 99
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 54, 513
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 2 cut(s) 208, 384
LpnPI CCDG 9 cut(s) 55, 72, 78, 270, 343, 349, 350, 402, 462
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 292, 455, 494
MalI GATC 2 cut(s) 210, 386
MbiI CCGCTC 1 cut(s) 171
MboI GATC 2 cut(s) 208, 384
MflI RGATCY 1 cut(s) 208
MluCI AATT 2 cut(s) 320, 399
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 2 cut(s) 117, 387
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 1 cut(s) 323
MspI CCGG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 360
NdeII GATC 2 cut(s) 208, 384
NlaIII CATG 2 cut(s) 54, 513
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 455
NspV TTCGAA 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 3 cut(s) 203, 241, 483
PkrI GCNGC 2 cut(s) 157, 356
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 2 cut(s) 69, 97
RsaNI GTAC 2 cut(s) 68, 96
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 2 cut(s) 156, 355
Sau3AI GATC 2 cut(s) 208, 384
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 1 cut(s) 308
SetI ASST 4 cut(s) 69, 73, 379, 428
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 2 cut(s) 72, 162
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SnaBI TACGTA 1 cut(s) 67
Sse9I AATT 2 cut(s) 320, 399
SsiI CCGC 2 cut(s) 156, 171
SspMI CTAG 1 cut(s) 213
TaaI ACNGT 5 cut(s) 76, 166, 235, 292, 413
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 486
TasI AATT 2 cut(s) 320, 399
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 3 cut(s) 203, 241, 483
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 3 cut(s) 49, 171, 295
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 299
TspRI CASTG 3 cut(s) 49, 171, 295
VpaK11BI GGWCC 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.