RLG00000026405

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000150
Physical Location & Seq
Reverse (-)
2814177 .. 2814935
759 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026405

Sequence Viewer

Length: 759 bp
ATGATTCCTATACTGGTGGCCGGTATATACGAAATCAAACTTGACCAACTTCAGCAACTTGAGCGTGGTAAATCTATGGGCGGACCTGACACTGATCCTTCAACTCTACCAATGCTCGAACCTGTATTAAAGTTCTTTGATGAGAGCTGGAAGATGGAGGGGCTATGTTTACTTGATGATGCTAGATTTGGCAGTCTCTCCAAGTTATATATTATGGTAAATCAAATCCCATGGGATTATCTCAAGCCCGTCACACCCAAGCACGCATTTTTCTTTGACACATCAAGCTTAGAACTGCAGAAGGTTTCTCCACCCAAAACGTCTAAGGAGAATTGTCTTGTCATATCAGCATATGGAATGCTGTACTATCTTGCAGAACCAATGTGCTTTCCTAAGATTCAAGAACCATTATTCGAGCGATATGATCCGCCCAGTGATTCATGGGAGTCCTTGCCTCCTTTTCCAGATTATTCTCTGCATCAGGCACAGACAGAGATGACCGGTTATGCCGTTTGTTATGGGTATATACTGTTGTCCATGAAAAATAAGAAGGGATATGAAGCGGCGGCTTTTCATATTCGTAGCACAACATGGCACAAGGTCAAAATTAGTCCAGAGAATCCTTACTATTATCCTTTCTACGGAAGGGATGTGGTTGTAGATAATACTATCTATGCCTTTGCATGTAATCTCAATTTGCTTCTAGTATTATCTTTCTGGTGGGATTCAGATGGGGATGGTGATATTGCCAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.97

Weight (kDa)

5.05

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 81, 428, 563, 566
AclWI GGATC 2 cut(s) 89, 419
AcoI YGGCCR 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 35
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 641
AgeI ACCGGT 1 cut(s) 500
AgsI TTSAA 2 cut(s) 102, 401
AluBI AGCT 2 cut(s) 147, 288
AluI AGCT 2 cut(s) 147, 288
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 2 cut(s) 89, 419
AoxI GGCC 1 cut(s) 18
AsiGI ACCGGT 1 cut(s) 500
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 752
AvaII GGWCC 1 cut(s) 83
BccI CCATC 3 cut(s) 148, 725, 731
BceAI ACGGC 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 2 cut(s) 183, 704
BfmI CTRYAG 1 cut(s) 296
BisI GCNGC 2 cut(s) 564, 567
BlsI GCNGC 2 cut(s) 565, 568
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 169, 487
BmuI ACTGGG 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 80, 227
BsaJI CCNNGG 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse118I RCCGGY 2 cut(s) 20, 500
Bse1I ACTGG 2 cut(s) 18, 432
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 2 cut(s) 655, 742
BseLI CCNNNNNNNGG 1 cut(s) 641
BseNI ACTGG 2 cut(s) 18, 432
BshFI GGCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 500
BsiSI CCGG 2 cut(s) 21, 501
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 94, 424
Bsp19I CCATGG 1 cut(s) 230
BspACI CCGC 4 cut(s) 81, 428, 563, 566
BspANI GGCC 1 cut(s) 20
BspMAI CTGCAG 1 cut(s) 300
BspPI GGATC 2 cut(s) 89, 419
BsrFI RCCGGY 2 cut(s) 20, 500
BsrI ACTGG 2 cut(s) 18, 432
BssAI RCCGGY 2 cut(s) 20, 500
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 2 cut(s) 94, 424
BssT1I CCWWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 3 cut(s) 289, 324, 393
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 2 cut(s) 655, 742
BstKTI GATC 2 cut(s) 97, 427
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 94, 424
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 687
BstSFI CTRYAG 1 cut(s) 296
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 2 cut(s) 655, 742
BtsIMutI CAGTG 2 cut(s) 90, 439
Cac8I GCNNGC 1 cut(s) 264
Cfr10I RCCGGY 2 cut(s) 20, 500
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 364
CspAI ACCGGT 1 cut(s) 500
CviAII CATG 5 cut(s) 231, 441, 538, 591, 684
CviJI RGCY 6 cut(s) 20, 147, 163, 247, 288, 569
CviKI_1 RGCY 6 cut(s) 20, 147, 163, 247, 288, 569
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 3 cut(s) 289, 324, 393
DpnI GATC 2 cut(s) 96, 426
DpnII GATC 2 cut(s) 94, 424
EaeI YGGCCR 1 cut(s) 18
EciI GGCGGA 2 cut(s) 96, 417
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 5 cut(s) 234, 444, 541, 594, 687
FatI CATG 5 cut(s) 230, 440, 537, 590, 683
FauNDI CATATG 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 564, 567
FokI GGATG 2 cut(s) 662, 749
Fsp4HI GCNGC 2 cut(s) 564, 567
FspBI CTAG 2 cut(s) 183, 704
GluI GCNGC 2 cut(s) 564, 567
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 21, 501
Hin1II CATG 5 cut(s) 234, 444, 541, 594, 687
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 6 cut(s) 4, 397, 437, 446, 619, 725
HpaII CCGG 2 cut(s) 21, 501
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 730
Hpy188III TCNNGA 3 cut(s) 401, 464, 614
Hpy8I GTNNAC 1 cut(s) 170
HpyAV CCTTC 4 cut(s) 108, 295, 544, 639
HpyCH4III ACNGT 1 cut(s) 531
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 4 cut(s) 298, 374, 478, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 3 cut(s) 289, 324, 393
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 5 cut(s) 234, 444, 541, 594, 687
Kzo9I GATC 2 cut(s) 94, 424
LweI GCATC 2 cut(s) 169, 487
MaeI CTAG 2 cut(s) 183, 704
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 250
MalI GATC 2 cut(s) 96, 426
MboI GATC 2 cut(s) 94, 424
MboII GAAGA 1 cut(s) 163
MluCI AATT 3 cut(s) 331, 606, 694
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 2 cut(s) 151, 465
MseI TTAA 1 cut(s) 128
MspI CCGG 2 cut(s) 21, 501
Mva1269I GAATGC 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 61
NcoI CCATGG 1 cut(s) 230
NdeI CATATG 1 cut(s) 352
NdeII GATC 2 cut(s) 94, 424
NlaIII CATG 5 cut(s) 234, 444, 541, 594, 687
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 1 cut(s) 687
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 5 cut(s) 4, 397, 437, 619, 725
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 2 cut(s) 565, 568
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PspPI GGNCC 1 cut(s) 83
PstI CTGCAG 1 cut(s) 300
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 2 cut(s) 564, 567
Sau3AI GATC 2 cut(s) 94, 424
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 1 cut(s) 455
SetI ASST 7 cut(s) 88, 124, 149, 290, 306, 323, 603
SfaNI GCATC 2 cut(s) 169, 487
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 59, 242
SmoI CTYRAG 2 cut(s) 59, 242
Sse9I AATT 3 cut(s) 331, 606, 694
SsiI CCGC 4 cut(s) 81, 428, 563, 566
SspMI CTAG 2 cut(s) 183, 704
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 531
TaiI ACGT 1 cut(s) 323
TaqI TCGA 2 cut(s) 117, 414
TasI AATT 3 cut(s) 331, 606, 694
TatI WGTACW 1 cut(s) 363
TauI GCSGC 2 cut(s) 566, 569
TfiI GAWTC 5 cut(s) 4, 397, 437, 619, 725
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 2 cut(s) 97, 439
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 4 cut(s) 429, 554, 563, 573
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 2 cut(s) 97, 439
VpaK11BI GGWCC 1 cut(s) 83
XceI RCATGY 1 cut(s) 687
XspI CTAG 2 cut(s) 183, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.