Prupe.5G190800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000150
Physical Location & Seq
Reverse (-)
15663222 .. 15664878
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G190800.1

Sequence Viewer

Length: 624 bp
ATGAAGGGCTGGTGGGATTATGAACAACAAAGGCACTCGTTCATCATGAGGCAGTGCGAGGCAACCTGGTGCATTTCAATAGCAAAGGCCCTATCAATCATCTGGTATCATGGTGGATCGGAAAATATCTCAACCTTCTGCCGCCGCTGTGCTCCCTCAGGTCAAGATATTCTGGACCGTGCCTTGACGATGGCTTCACGCGAAGATGAGCTCCTGGGCAAGATATCAGAGATCGAGAAATCTCTAGCAGCGCTTTCCACCCAACAAATCCAACTGGTCGATTTGAAGAAATCAATATGGGAGGAGTTTCACCTACTAGGCGCCAGTAGGGCCAGCTCTCACAAATATGGGCGTTCACCCTTACCCAAGTATGATGCGGCTATTCTTCATACATCATTTGCAAGGCTTCTGGGTCACCCGAAAGCATCATCCACGATGCTATCTAATACTGGGGATCAGGTCCACTTCTTTCATGGGCTTGTTGATCGTCTAAACAATGAACTCCGGGGATTTGAGGCGGTCGTATCTGAGCTCTGGTATGTTGAGGAATTTGATGTTTTGGCTCTTGCTTTGAATGGAAGAATGAAGATGCGCAGGTTCCAACTTGGCTGCTCAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.62

Weight (kDa)

8.28

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 593
Acc36I ACCTGC 1 cut(s) 585
AccB1I GGYRCC 1 cut(s) 320
AccII CGCG 1 cut(s) 201
AciI CCGC 4 cut(s) 142, 145, 377, 518
AclWI GGATC 2 cut(s) 124, 462
AcsI RAATTY 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 321
AfeI AGCGCT 1 cut(s) 252
AgsI TTSAA 3 cut(s) 78, 286, 574
AjnI CCWGG 2 cut(s) 65, 213
AluBI AGCT 3 cut(s) 211, 336, 532
AluI AGCT 3 cut(s) 211, 336, 532
Alw21I GWGCWC 3 cut(s) 154, 213, 534
AlwI GGATC 2 cut(s) 124, 462
Aor51HI AGCGCT 1 cut(s) 252
AoxI GGCC 2 cut(s) 87, 330
ApeKI GCWGC 2 cut(s) 248, 609
ApoI RAATTY 1 cut(s) 548
AspLEI GCGC 3 cut(s) 253, 323, 594
AspS9I GGNCC 4 cut(s) 88, 175, 330, 460
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 3 cut(s) 302, 348, 407
AvaII GGWCC 2 cut(s) 175, 460
AxyI CCTNAGG 1 cut(s) 157
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 213, 534
Bbv12I GWGCWC 3 cut(s) 154, 213, 534
BbvI GCAGC 2 cut(s) 260, 596
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 67, 215
BcnI CCSGG 1 cut(s) 506
BfaI CTAG 2 cut(s) 245, 317
BfoI RGCGCY 2 cut(s) 254, 324
BfuAI ACCTGC 1 cut(s) 585
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 5 cut(s) 142, 145, 249, 378, 610
BlsI GCNGC 5 cut(s) 143, 146, 250, 379, 611
Bme1390I CCNGG 3 cut(s) 67, 215, 506
Bme18I GGWCC 2 cut(s) 175, 460
BmgT120I GGNCC 4 cut(s) 88, 175, 330, 460
BmiI GGNNCC 2 cut(s) 322, 599
BmrFI CCNGG 3 cut(s) 67, 215, 506
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 4 cut(s) 364, 426, 434, 579
BmuI ACTGGG 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 598
BpuMI CCSGG 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 214, 505
Bse1I ACTGG 3 cut(s) 279, 324, 454
Bse21I CCTNAGG 1 cut(s) 157
BseBI CCWGG 2 cut(s) 67, 215
BseDI CCNNGG 2 cut(s) 214, 505
BseGI GGATG 1 cut(s) 428
BseMII CTCAG 2 cut(s) 171, 519
BseNI ACTGG 3 cut(s) 279, 324, 454
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 260, 596
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 522
BshFI GGCC 2 cut(s) 89, 332
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 522
BsiHKAI GWGCWC 3 cut(s) 154, 213, 534
BsiSI CCGG 1 cut(s) 505
BsnI GGCC 2 cut(s) 89, 332
Bsp1286I GDGCHC 3 cut(s) 154, 213, 534
Bsp143I GATC 4 cut(s) 116, 231, 454, 484
BspACI CCGC 4 cut(s) 142, 145, 377, 518
BspANI GGCC 2 cut(s) 89, 332
BspCNI CTCAG 2 cut(s) 170, 520
BspFNI CGCG 1 cut(s) 201
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 322, 599
BspMI ACCTGC 1 cut(s) 585
BspPI GGATC 2 cut(s) 124, 462
BspT107I GGYRCC 1 cut(s) 320
BsrI ACTGG 3 cut(s) 279, 324, 454
BssECI CCNNGG 2 cut(s) 214, 505
BssMI GATC 4 cut(s) 116, 231, 454, 484
BssNI GRCGYC 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 67, 215
Bst4CI ACNGT 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 157, 528
BstEII GGTNACC 1 cut(s) 413
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 2 cut(s) 254, 324
BstHHI GCGC 3 cut(s) 253, 323, 594
BstKTI GATC 4 cut(s) 119, 234, 457, 487
BstMBI GATC 4 cut(s) 116, 231, 454, 484
BstMCI CGRYCG 1 cut(s) 522
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 2 cut(s) 67, 215
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 3 cut(s) 65, 213, 504
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 260, 596
Bsu36I CCTNAGG 1 cut(s) 157
BsuRI GGCC 2 cut(s) 89, 332
BtsCI GGATG 1 cut(s) 428
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
BveI ACCTGC 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 334
CciI TCATGA 1 cut(s) 45
CfoI GCGC 3 cut(s) 253, 323, 594
Cfr13I GGNCC 4 cut(s) 88, 175, 330, 460
CsiI ACCWGGT 1 cut(s) 65
CviAII CATG 3 cut(s) 46, 110, 473
DdeI CTNAG 2 cut(s) 157, 528
DinI GGCGCC 1 cut(s) 322
DpnI GATC 4 cut(s) 118, 233, 456, 486
DpnII GATC 4 cut(s) 116, 231, 454, 484
Ecl136II GAGCTC 2 cut(s) 211, 532
Eco24I GRGCYC 2 cut(s) 213, 534
Eco32I GATATC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 175, 460
Eco47III AGCGCT 1 cut(s) 252
Eco53kI GAGCTC 2 cut(s) 211, 532
Eco81I CCTNAGG 1 cut(s) 157
Eco91I GGTNACC 1 cut(s) 413
EcoICRI GAGCTC 2 cut(s) 211, 532
EcoO109I RGGNCCY 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 65, 213
EcoRV GATATC 1 cut(s) 225
EcoT38I GRGCYC 2 cut(s) 213, 534
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
FaeI CATG 3 cut(s) 49, 113, 476
FaiI YATR 9 cut(s) 21, 47, 111, 298, 348, 372, 390, 474, 540
FatI CATG 3 cut(s) 45, 109, 472
Fnu4HI GCNGC 5 cut(s) 142, 145, 249, 378, 610
FokI GGATG 1 cut(s) 415
FriOI GRGCYC 2 cut(s) 213, 534
Fsp4HI GCNGC 5 cut(s) 142, 145, 249, 378, 610
FspBI CTAG 2 cut(s) 245, 317
FspI TGCGCA 1 cut(s) 593
GlaI GCGC 3 cut(s) 252, 322, 593
GluI GCNGC 5 cut(s) 142, 145, 249, 378, 610
HaeII RGCGCY 2 cut(s) 254, 324
HaeIII GGCC 2 cut(s) 89, 332
HapII CCGG 1 cut(s) 505
HhaI GCGC 3 cut(s) 253, 323, 594
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 3 cut(s) 49, 113, 476
Hin6I GCGC 3 cut(s) 251, 321, 592
HinP1I GCGC 3 cut(s) 251, 321, 592
HpaII CCGG 1 cut(s) 505
HphI GGTGA 3 cut(s) 302, 348, 407
Hpy166II GTNNAC 2 cut(s) 356, 463
Hpy188I TCNGA 3 cut(s) 121, 229, 529
Hpy188III TCNNGA 5 cut(s) 46, 164, 173, 235, 615
Hpy8I GTNNAC 2 cut(s) 356, 463
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 72, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 157, 528
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 3 cut(s) 49, 113, 476
HspAI GCGC 3 cut(s) 251, 321, 592
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 4 cut(s) 116, 231, 454, 484
LmnI GCTCC 2 cut(s) 157, 216
Lsp1109I GCAGC 2 cut(s) 260, 596
LweI GCATC 4 cut(s) 364, 426, 434, 579
MabI ACCWGGT 1 cut(s) 65
MaeI CTAG 2 cut(s) 245, 317
MaeIII GTNAC 1 cut(s) 413
MalI GATC 4 cut(s) 118, 233, 456, 486
MboI GATC 4 cut(s) 116, 231, 454, 484
MboII GAAGA 5 cut(s) 215, 298, 377, 591, 598
MhlI GDGCHC 3 cut(s) 154, 213, 534
MluCI AATT 2 cut(s) 548, 619
Mly113I GGCGCC 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 6 cut(s) 42, 52, 166, 295, 508, 538
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 3 cut(s) 67, 215, 506
MvaI CCWGG 2 cut(s) 67, 215
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 329
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 1 cut(s) 506
NdeII GATC 4 cut(s) 116, 231, 454, 484
NlaIII CATG 3 cut(s) 49, 113, 476
NlaIV GGNNCC 2 cut(s) 322, 599
NmuCI GTSAC 1 cut(s) 413
NsbI TGCGCA 1 cut(s) 593
PagI TCATGA 1 cut(s) 45
PkrI GCNGC 5 cut(s) 143, 146, 250, 379, 611
PluTI GGCGCC 1 cut(s) 324
Psp124BI GAGCTC 2 cut(s) 213, 534
Psp6I CCWGG 2 cut(s) 65, 213
PspEI GGTNACC 1 cut(s) 413
PspGI CCWGG 2 cut(s) 65, 213
PspN4I GGNNCC 2 cut(s) 322, 599
PspPI GGNCC 4 cut(s) 88, 175, 330, 460
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 2 cut(s) 213, 534
SatI GCNGC 5 cut(s) 142, 145, 249, 378, 610
Sau3AI GATC 4 cut(s) 116, 231, 454, 484
Sau96I GGNCC 4 cut(s) 88, 175, 330, 460
ScrFI CCNGG 3 cut(s) 67, 215, 506
SduI GDGCHC 3 cut(s) 154, 213, 534
SetI ASST 9 cut(s) 68, 137, 163, 213, 315, 338, 462, 534, 599
SexAI ACCWGGT 1 cut(s) 65
SfaNI GCATC 4 cut(s) 364, 426, 434, 579
SfoI GGCGCC 1 cut(s) 322
SinI GGWCC 2 cut(s) 175, 460
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 2 cut(s) 548, 619
SsiI CCGC 4 cut(s) 142, 145, 377, 518
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 2 cut(s) 245, 317
SstI GAGCTC 2 cut(s) 213, 534
StyD4I CCNGG 3 cut(s) 65, 213, 504
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 234, 279
TasI AATT 2 cut(s) 548, 619
TauI GCSGC 3 cut(s) 144, 147, 380
TscAI CASTG 1 cut(s) 59
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 248, 609
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 7 cut(s) 17, 31, 36, 377, 461, 513, 599
TspRI CASTG 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 175, 460
XapI RAATTY 1 cut(s) 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XspI CTAG 2 cut(s) 245, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.