FvH4_5g25390

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000150
Physical Location & Seq
Reverse (-)
16909822 .. 16914054
4233 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25390.t1

Sequence Viewer

Length: 1671 bp
ATGTGGAAATTTTGTATTTTGGGTGCCAAGTTGTATATTTTGCCAGATGGTGGTCCCGATTTCTTTGACGAGGATGTGTGTTTCCCCAAATGCGATGGACGTGTTCTCGACATCAAAACTGGGAAACTGGTGTCATCAATTAAAAGGCCAGCTCCCAAATGGTTTGGAACTCATGTGTCTGCATATGGGAAAATTTACTCTCTTTCGGATCCATATTGCTCATGTGATGTACCAGAACCGTCCTTTGAGGAGTATGACCCTATTGCTGACTCTTGGCAGCCGCTGTGCTCTTATCCATATTCTGATGAATATGGTACTACAGAGATACAGGGTTATGCCGTTTGTGATGAAGTCTTACTGTTTAGTATATGTGGCCGGAAGGATAATGACGGCGCACTGTGGGCTTATAATGTAATTAAAAATAAGTGGTGTCCAGTCCAAGTGGAGAATACAGATTGCTATTTCCGAAGAAGGGCTGTGGTTGTGGACCAGACTATCTATGCCTTATCCAAATTGGACATGGCTGTTGTCGCATTTTCTATTACGAGCAACCAAAATGAGGAAGGGCATATTAAGTGGAAGGATATCACACTCACAGAAGAAGAGATTACTACCTCCATCAACCGGGAAAAACAAGTTTCCGAGCAGCAACAAGCATTTCCAGATCCTTACCAAGCTGAAATTGCCCCTCAGCCTAGATATGAAGCATGCTCCTCATCTCAGCCACCTGAGCCTTCAGAAGTGGCAGAGCAGTTTCAGCAAGTTTCCATCCTGCAAGAGGAAGATCTTAGTGAGGCCATTCAACATGGGGCAGTCTCTAGCAAGGTTAAGACTGGAAAAAGGTGTACAGTCAAGGCAAACCAGTTCTGTGCTGTATTACCAGACAAGGGTCTGCACCAATATGATGTTACTTTTACACCAGAAGTCACATCATGCTGTGTAAACCGTGCTGTGATGTTTCAGCTGGTGAAACTGTGCAGGGACTCCCATCTTTCAATGTGGCTTCCTGCTTATGATGGGAGGAAGATCCTGTATACTGCTGGACCTCTTCCTTTGCAGTCAAAGGAATTTAAAATCACTCCTCTGGATGATGATGAGGGACATGGACTCCCACCTTTCAAACCCAAACGTAGGGGAAGGAAGTTCAGAGTCGTGATCGAATTCGCTGCACATGCTGACCTGTCTGTAAAATTGTTAAGGGACAAAGGTACTCAAAAGAGTTTGGATGAGAGACAGGTAACTGCTTTGCTTAAGGTGACTTCTCAGCGCCCTTCAGAGAAGAAAGTGCCTAAAGTCGGGTTTAACTTGCAAAATCTTGGCTTCTACGACAATGTTGCTGTGACATTGTACTTTTCTTTGTCAAACAGTTTGATTCCAGAAGCACATTGCTTTGATTGTGCTTTACATAAATGCTGGAATGCAATTGTGATAACGTGGAAGGAGTCCACAATCCACATAGAAAGAGAGTTACGCAAACAACCTGAACAACAAACTCTAAAACAGTATGACGTATTGCCTACGATCAAGGTCCTTATGCAAAGGAGTTCAGAGTTAAAATTAGTGAGAATACGACTCAGGTTGAAGCTCGTAGTCTTCCTCCACCATGGCTCAAATACCATAATACTGGAAAGCAGGAAGGATGCCGGCCCAAAGGTGGACAGTGGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

557

Amino Acids

63.07

Weight (kDa)

6.65

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 280 - 395 2.5e-19 N-terminal domain of argonaute
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 50
AccI GTMKAC 1 cut(s) 1034
AciI CCGC 1 cut(s) 281
AclWI GGATC 4 cut(s) 203, 216, 659, 1021
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 4 cut(s) 8, 192, 1067, 1160
AcuI CTGAAG 2 cut(s) 720, 1257
AfaI GTAC 5 cut(s) 231, 316, 847, 1210, 1349
AfiI CCNNNNNNNGG 9 cut(s) 50, 472, 559, 624, 778, 887, 1131, 1295, 1654
AflII CTTAAG 1 cut(s) 1250
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 4 cut(s) 803, 996, 1120, 1582
AjiI CACGTC 1 cut(s) 101
AluBI AGCT 4 cut(s) 152, 677, 964, 1585
AluI AGCT 4 cut(s) 152, 677, 964, 1585
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 2 cut(s) 820, 1225
AlwI GGATC 4 cut(s) 203, 216, 659, 1021
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 4 cut(s) 146, 373, 795, 1645
ApeKI GCWGC 3 cut(s) 277, 646, 1166
ApoI RAATTY 4 cut(s) 8, 192, 1067, 1160
AspLEI GCGC 2 cut(s) 395, 1269
AspS9I GGNCC 5 cut(s) 53, 487, 1043, 1528, 1646
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 2 cut(s) 979, 1267
AvaII GGWCC 4 cut(s) 53, 487, 1043, 1528
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 1585
Bbv12I GWGCWC 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 3 cut(s) 289, 658, 1153
BccI CCATC 6 cut(s) 41, 89, 626, 776, 996, 1010
BceAI ACGGC 2 cut(s) 323, 406
BcgI CGANNNNNNTGC 4 cut(s) 1148, 1182, 1316, 1350
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 2 cut(s) 820, 1225
BfaI CTAG 2 cut(s) 696, 819
BfmI CTRYAG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 1270
BfrI CTTAAG 1 cut(s) 1250
BglII AGATCT 1 cut(s) 784
BisI GCNGC 4 cut(s) 278, 281, 647, 1167
BlsI GCNGC 4 cut(s) 279, 282, 648, 1168
Bme1390I CCNGG 1 cut(s) 626
Bme18I GGWCC 4 cut(s) 53, 487, 1043, 1528
BmgBI CACGTC 1 cut(s) 101
BmgT120I GGNCC 5 cut(s) 53, 487, 1043, 1528, 1646
BmiI GGNNCC 3 cut(s) 25, 55, 210
BmrFI CCNGG 1 cut(s) 626
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 1630
BmuI ACTGGG 1 cut(s) 129
BoxI GACNNNNGTC 1 cut(s) 888
BpiI GAAGAC 1 cut(s) 1585
Bpu10I CCTNAGC 2 cut(s) 690, 729
BpuMI CCSGG 1 cut(s) 626
BsaJI CCNNGG 1 cut(s) 1603
BsaXI ACNNNNNCTCC 2 cut(s) 1092, 1122
Bsc4I CCNNNNNNNGG 9 cut(s) 50, 472, 559, 624, 778, 887, 1131, 1295, 1654
Bse118I RCCGGY 1 cut(s) 1643
Bse1I ACTGG 6 cut(s) 124, 132, 434, 838, 862, 1629
Bse3DI GCAATG 1 cut(s) 1384
BseDI CCNNGG 1 cut(s) 1603
BseGI GGATG 5 cut(s) 79, 768, 1093, 1231, 1645
BseLI CCNNNNNNNGG 9 cut(s) 50, 472, 559, 624, 778, 887, 1131, 1295, 1654
BseMI GCAATG 1 cut(s) 1384
BseMII CTCAG 5 cut(s) 704, 720, 734, 1277, 1588
BseNI ACTGG 6 cut(s) 124, 132, 434, 838, 862, 1629
BseRI GAGGAG 3 cut(s) 263, 703, 1071
BseXI GCAGC 3 cut(s) 289, 658, 1153
BsgI GTGCAG 3 cut(s) 878, 997, 1152
BshFI GGCC 4 cut(s) 148, 375, 797, 1647
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 290
BsiSI CCGG 3 cut(s) 376, 625, 1644
BslFI GGGAC 4 cut(s) 39, 995, 1113, 1214
BslI CCNNNNNNNGG 9 cut(s) 50, 472, 559, 624, 778, 887, 1131, 1295, 1654
BsmAI GTCTC 2 cut(s) 820, 1225
BsmFI GGGAC 4 cut(s) 39, 995, 1113, 1214
BsmI GAATGC 1 cut(s) 1423
BsnI GGCC 4 cut(s) 148, 375, 797, 1647
Bsp1286I GDGCHC 1 cut(s) 290
Bsp1407I TGTACA 1 cut(s) 845
Bsp143I GATC 6 cut(s) 208, 664, 784, 1026, 1155, 1521
Bsp19I CCATGG 1 cut(s) 1603
BspACI CCGC 1 cut(s) 281
BspANI GGCC 4 cut(s) 148, 375, 797, 1647
BspCNI CTCAG 5 cut(s) 703, 721, 733, 1276, 1587
BspLI GGNNCC 3 cut(s) 25, 55, 210
BspPI GGATC 4 cut(s) 203, 216, 659, 1021
BspT107I GGYRCC 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 1250
BsrDI GCAATG 1 cut(s) 1384
BsrFI RCCGGY 1 cut(s) 1643
BsrGI TGTACA 1 cut(s) 845
BsrI ACTGG 6 cut(s) 124, 132, 434, 838, 862, 1629
BssAI RCCGGY 1 cut(s) 1643
BssECI CCNNGG 1 cut(s) 1603
BssMI GATC 6 cut(s) 208, 664, 784, 1026, 1155, 1521
BssNAI GTATAC 1 cut(s) 1035
BssT1I CCWWGG 1 cut(s) 1603
Bst1107I GTATAC 1 cut(s) 1035
Bst4CI ACNGT 9 cut(s) 240, 360, 399, 850, 947, 975, 1367, 1503, 1661
Bst6I CTCTTC 2 cut(s) 597, 1053
BstAFI CTTAAG 1 cut(s) 1250
BstAUI TGTACA 1 cut(s) 845
BstC8I GCNNGC 3 cut(s) 150, 709, 1645
BstDEI CTNAG 6 cut(s) 690, 720, 729, 788, 1263, 1574
BstDSI CCRYGG 1 cut(s) 1603
BstENI CCTNNNNNAGG 1 cut(s) 776
BstF5I GGATG 5 cut(s) 79, 768, 1093, 1231, 1645
BstH2I RGCGCY 1 cut(s) 1270
BstHHI GCGC 2 cut(s) 395, 1269
BstKTI GATC 6 cut(s) 211, 667, 787, 1029, 1158, 1524
BstMAI GTCTC 2 cut(s) 820, 1225
BstMBI GATC 6 cut(s) 208, 664, 784, 1026, 1155, 1521
BstMWI GCNNNNNNNGC 6 cut(s) 401, 530, 683, 730, 757, 1172
BstNSI RCATGY 2 cut(s) 711, 1175
BstPAI GACNNNNGTC 1 cut(s) 888
BstSCI CCNGG 1 cut(s) 624
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 3 cut(s) 289, 658, 1153
BstV2I GAAGAC 1 cut(s) 1585
BstX2I RGATCY 4 cut(s) 208, 664, 784, 1026
BstXI CCANNNNNNTGG 1 cut(s) 1624
BstYI RGATCY 4 cut(s) 208, 664, 784, 1026
BstZ17I GTATAC 1 cut(s) 1035
BsuRI GGCC 4 cut(s) 148, 375, 797, 1647
BtgI CCRYGG 1 cut(s) 1603
BtgZI GCGATG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 101
BtsCI GGATG 5 cut(s) 79, 768, 1093, 1231, 1645
BtsIMutI CAGTG 2 cut(s) 395, 1666
Cac8I GCNNGC 3 cut(s) 150, 709, 1645
CaiI CAGNNNCTG 1 cut(s) 283
CfoI GCGC 2 cut(s) 395, 1269
Cfr10I RCCGGY 1 cut(s) 1643
Cfr13I GGNCC 5 cut(s) 53, 487, 1043, 1528, 1646
Csp6I GTAC 5 cut(s) 230, 315, 846, 1209, 1348
CviAII CATG 9 cut(s) 173, 222, 520, 708, 806, 933, 1103, 1172, 1604
CviQI GTAC 5 cut(s) 230, 315, 846, 1209, 1348
DdeI CTNAG 6 cut(s) 690, 720, 729, 788, 1263, 1574
DpnI GATC 6 cut(s) 210, 666, 786, 1028, 1157, 1523
DpnII GATC 6 cut(s) 208, 664, 784, 1026, 1155, 1521
DraI TTTAAA 1 cut(s) 1072
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 597, 1053
EarI CTCTTC 2 cut(s) 597, 1053
Eco130I CCWWGG 1 cut(s) 1603
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 4 cut(s) 53, 487, 1043, 1528
Eco57I CTGAAG 2 cut(s) 720, 1257
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 1528
EcoRI GAATTC 1 cut(s) 1160
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 1603
ErhI CCWWGG 1 cut(s) 1603
FaeI CATG 9 cut(s) 176, 225, 523, 711, 809, 936, 1106, 1175, 1607
FaqI GGGAC 4 cut(s) 39, 995, 1113, 1214
FatI CATG 9 cut(s) 172, 221, 519, 707, 805, 932, 1102, 1171, 1603
FauNDI CATATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 1034
Fnu4HI GCNGC 4 cut(s) 278, 281, 647, 1167
FokI GGATG 5 cut(s) 86, 755, 1100, 1238, 1652
Fsp4HI GCNGC 4 cut(s) 278, 281, 647, 1167
FspBI CTAG 2 cut(s) 696, 819
GlaI GCGC 2 cut(s) 394, 1268
GluI GCNGC 4 cut(s) 278, 281, 647, 1167
HaeII RGCGCY 1 cut(s) 1270
HaeIII GGCC 4 cut(s) 148, 375, 797, 1647
HapII CCGG 3 cut(s) 376, 625, 1644
HhaI GCGC 2 cut(s) 395, 1269
Hin1II CATG 9 cut(s) 176, 225, 523, 711, 809, 936, 1106, 1175, 1607
Hin6I GCGC 2 cut(s) 393, 1267
HinP1I GCGC 2 cut(s) 393, 1267
HinfI GANTC 7 cut(s) 269, 983, 1107, 1149, 1372, 1442, 1572
HpaII CCGG 3 cut(s) 376, 625, 1644
HphI GGTGA 2 cut(s) 979, 1267
Hpy166II GTNNAC 6 cut(s) 487, 846, 943, 1035, 1446, 1657
Hpy188I TCNGA 8 cut(s) 208, 304, 467, 643, 739, 1148, 1276, 1549
Hpy188III TCNNGA 6 cut(s) 56, 107, 662, 1085, 1153, 1376
Hpy8I GTNNAC 6 cut(s) 487, 846, 943, 1035, 1446, 1657
HpyAV CCTTC 9 cut(s) 373, 465, 557, 574, 744, 1131, 1281, 1432, 1630
HpyCH4III ACNGT 9 cut(s) 240, 360, 399, 850, 947, 975, 1367, 1503, 1661
HpyCH4IV ACGT 4 cut(s) 100, 1129, 1433, 1509
HpyCH4V TGCA 9 cut(s) 182, 775, 895, 978, 1057, 1169, 1309, 1421, 1537
HpyF10VI GCNNNNNNNGC 6 cut(s) 401, 530, 683, 730, 757, 1172
HpyF3I CTNAG 6 cut(s) 690, 720, 729, 788, 1263, 1574
HpySE526I ACGT 4 cut(s) 100, 1129, 1433, 1509
Hsp92II CATG 9 cut(s) 176, 225, 523, 711, 809, 936, 1106, 1175, 1607
HspAI GCGC 2 cut(s) 393, 1267
KroI GCCGGC 1 cut(s) 1643
KroNI GCCGGC 1 cut(s) 1645
Kzo9I GATC 6 cut(s) 208, 664, 784, 1026, 1155, 1521
LmnI GCTCC 2 cut(s) 157, 716
Lsp1109I GCAGC 3 cut(s) 289, 658, 1153
LweI GCATC 1 cut(s) 1630
MaeI CTAG 2 cut(s) 696, 819
MaeII ACGT 4 cut(s) 100, 1129, 1433, 1509
MaeIII GTNAC 6 cut(s) 907, 925, 1237, 1255, 1339, 1467
MalI GATC 6 cut(s) 210, 666, 786, 1028, 1157, 1523
MboI GATC 6 cut(s) 208, 664, 784, 1026, 1155, 1521
MboII GAAGA 8 cut(s) 480, 611, 614, 794, 1036, 1040, 1291, 1585
MfeI CAATTG 1 cut(s) 1422
MflI RGATCY 4 cut(s) 208, 664, 784, 1026
MhlI GDGCHC 1 cut(s) 290
MlyI GAGTC 6 cut(s) 263, 977, 1101, 1158, 1451, 1566
MroNI GCCGGC 1 cut(s) 1643
MseI TTAA 9 cut(s) 141, 417, 573, 828, 1071, 1196, 1251, 1302, 1553
MslI CAYNNNNRTG 1 cut(s) 900
MspA1I CMGCKG 2 cut(s) 283, 964
MspCI CTTAAG 1 cut(s) 1250
MspI CCGG 3 cut(s) 376, 625, 1644
MspR9I CCNGG 1 cut(s) 626
MunI CAATTG 1 cut(s) 1422
Mva1269I GAATGC 1 cut(s) 1423
MwoI GCNNNNNNNGC 6 cut(s) 401, 530, 683, 730, 757, 1172
NaeI GCCGGC 1 cut(s) 1645
NciI CCSGG 1 cut(s) 626
NcoI CCATGG 1 cut(s) 1603
NdeI CATATG 1 cut(s) 184
NdeII GATC 6 cut(s) 208, 664, 784, 1026, 1155, 1521
NgoMIV GCCGGC 1 cut(s) 1643
NlaIII CATG 9 cut(s) 176, 225, 523, 711, 809, 936, 1106, 1175, 1607
NlaIV GGNNCC 3 cut(s) 25, 55, 210
NmuCI GTSAC 3 cut(s) 925, 1255, 1339
NspI RCATGY 2 cut(s) 711, 1175
PaeI GCATGC 1 cut(s) 711
PctI GAATGC 1 cut(s) 1423
PdiI GCCGGC 1 cut(s) 1645
PfeI GAWTC 1 cut(s) 1372
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 4 cut(s) 279, 282, 648, 1168
PleI GAGTC 6 cut(s) 263, 977, 1101, 1157, 1450, 1566
PpsI GAGTC 6 cut(s) 263, 977, 1101, 1157, 1450, 1566
PpuMI RGGWCCY 1 cut(s) 1528
PshAI GACNNNNGTC 1 cut(s) 888
PsiI TTATAA 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 1528
PspN4I GGNNCC 3 cut(s) 25, 55, 210
PspPI GGNCC 5 cut(s) 53, 487, 1043, 1528, 1646
PspPPI RGGWCCY 1 cut(s) 1528
PstNI CAGNNNCTG 1 cut(s) 283
PsuI RGATCY 4 cut(s) 208, 664, 784, 1026
PvuII CAGCTG 1 cut(s) 964
RsaI GTAC 5 cut(s) 231, 316, 847, 1210, 1349
RsaNI GTAC 5 cut(s) 230, 315, 846, 1209, 1348
RseI CAYNNNNRTG 1 cut(s) 900
SaqAI TTAA 9 cut(s) 141, 417, 573, 828, 1071, 1196, 1251, 1302, 1553
SatI GCNGC 4 cut(s) 278, 281, 647, 1167
Sau3AI GATC 6 cut(s) 208, 664, 784, 1026, 1155, 1521
Sau96I GGNCC 5 cut(s) 53, 487, 1043, 1528, 1646
SchI GAGTC 6 cut(s) 263, 977, 1101, 1158, 1451, 1566
ScrFI CCNGG 1 cut(s) 626
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 1 cut(s) 1630
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 4 cut(s) 53, 487, 1043, 1528
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 1 cut(s) 1250
SmoI CTYRAG 1 cut(s) 1250
SphI GCATGC 1 cut(s) 711
SsiI CCGC 1 cut(s) 281
SspMI CTAG 2 cut(s) 696, 819
StyD4I CCNGG 1 cut(s) 624
StyI CCWWGG 1 cut(s) 1603
TaaI ACNGT 9 cut(s) 240, 360, 399, 850, 947, 975, 1367, 1503, 1661
TaiI ACGT 4 cut(s) 103, 1132, 1436, 1512
TaqI TCGA 2 cut(s) 108, 1158
TatI WGTACW 2 cut(s) 845, 1347
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 1 cut(s) 1372
Tru1I TTAA 9 cut(s) 141, 417, 573, 828, 1071, 1196, 1251, 1302, 1553
Tru9I TTAA 9 cut(s) 141, 417, 573, 828, 1071, 1196, 1251, 1302, 1553
TscAI CASTG 2 cut(s) 402, 1666
TseFI GTSAC 3 cut(s) 925, 1255, 1339
TseI GCWGC 3 cut(s) 277, 646, 1166
Tsp45I GTSAC 3 cut(s) 925, 1255, 1339
TspDTI ATGAA 3 cut(s) 321, 363, 717
TspRI CASTG 2 cut(s) 402, 1666
Van91I CCANNNNNTGG 1 cut(s) 50
Vha464I CTTAAG 1 cut(s) 1250
VpaK11BI GGWCC 4 cut(s) 53, 487, 1043, 1528
XagI CCTNNNNNAGG 1 cut(s) 776
XapI RAATTY 4 cut(s) 8, 192, 1067, 1160
XceI RCATGY 2 cut(s) 711, 1175
XcmI CCANNNNNNNNNTGG 2 cut(s) 156, 517
XmiI GTMKAC 1 cut(s) 1034
XspI CTAG 2 cut(s) 696, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.