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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1119 |
| Acc36I | ACCTGC | 1 cut(s) | 1119 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 53, 483 |
| AccI | GTMKAC | 1 cut(s) | 981 |
| AciI | CCGC | 3 cut(s) | 104, 237, 564 |
| AclWI | GGATC | 2 cut(s) | 137, 461 |
| AcoI | YGGCCR | 2 cut(s) | 471, 1074 |
| AcuI | CTGAAG | 1 cut(s) | 114 |
| AcyI | GRCGYC | 1 cut(s) | 691 |
| AfaI | GTAC | 3 cut(s) | 138, 505, 1071 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 53, 483, 644, 649, 687, 806 |
| AgsI | TTSAA | 4 cut(s) | 122, 154, 920, 1043 |
| AleI | CACNNNNGTG | 1 cut(s) | 595 |
| AluBI | AGCT | 4 cut(s) | 101, 113, 219, 365 |
| AluI | AGCT | 4 cut(s) | 101, 113, 219, 365 |
| Alw21I | GWGCWC | 1 cut(s) | 61 |
| Alw44I | GTGCAC | 1 cut(s) | 57 |
| AlwI | GGATC | 2 cut(s) | 137, 461 |
| Ama87I | CYCGRG | 1 cut(s) | 723 |
| AoxI | GGCC | 5 cut(s) | 254, 471, 697, 868, 1074 |
| ApaLI | GTGCAC | 1 cut(s) | 57 |
| ApeKI | GCWGC | 4 cut(s) | 101, 362, 566, 755 |
| AspLEI | GCGC | 2 cut(s) | 270, 431 |
| AspS9I | GGNCC | 2 cut(s) | 868, 954 |
| AsuC2I | CCSGG | 1 cut(s) | 644 |
| AsuHPI | GGTGA | 2 cut(s) | 265, 961 |
| AvaI | CYCGRG | 1 cut(s) | 723 |
| AvaII | GGWCC | 1 cut(s) | 954 |
| BaeGI | GKGCMC | 2 cut(s) | 61, 382 |
| BbsI | GAAGAC | 1 cut(s) | 1110 |
| Bbv12I | GWGCWC | 1 cut(s) | 61 |
| BbvI | GCAGC | 4 cut(s) | 88, 374, 553, 742 |
| BccI | CCATC | 7 cut(s) | 47, 430, 565, 659, 728, 767, 802 |
| BceAI | ACGGC | 1 cut(s) | 433 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 548, 582 |
| BcnI | CCSGG | 1 cut(s) | 644 |
| BfoI | RGCGCY | 1 cut(s) | 271 |
| BfuAI | ACCTGC | 1 cut(s) | 1119 |
| BisI | GCNGC | 4 cut(s) | 102, 363, 567, 756 |
| BlsI | GCNGC | 4 cut(s) | 103, 364, 568, 757 |
| BmcAI | AGTACT | 1 cut(s) | 138 |
| Bme1390I | CCNGG | 1 cut(s) | 644 |
| Bme18I | GGWCC | 1 cut(s) | 954 |
| BmeT110I | CYCGRG | 1 cut(s) | 723 |
| BmgT120I | GGNCC | 2 cut(s) | 868, 954 |
| BmrFI | CCNGG | 1 cut(s) | 644 |
| BmsI | GCATC | 6 cut(s) | 354, 390, 429, 610, 619, 901 |
| BpiI | GAAGAC | 1 cut(s) | 1110 |
| BpmI | CTGGAG | 1 cut(s) | 135 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BpuMI | CCSGG | 1 cut(s) | 644 |
| BsaAI | YACGTR | 1 cut(s) | 806 |
| BsaBI | GATNNNNATC | 1 cut(s) | 633 |
| BsaHI | GRCGYC | 1 cut(s) | 691 |
| BsaJI | CCNNGG | 3 cut(s) | 37, 251, 643 |
| BsaWI | WCCGGW | 1 cut(s) | 145 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 930, 960 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 53, 483, 644, 649, 687, 806 |
| Bse118I | RCCGGY | 1 cut(s) | 1072 |
| Bse1I | ACTGG | 3 cut(s) | 134, 605, 619 |
| Bse8I | GATNNNNATC | 1 cut(s) | 633 |
| BseDI | CCNNGG | 3 cut(s) | 37, 251, 643 |
| BseGI | GGATG | 5 cut(s) | 405, 601, 787, 794, 816 |
| BseJI | GATNNNNATC | 1 cut(s) | 633 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 53, 483, 644, 649, 687, 806 |
| BseMII | CTCAG | 1 cut(s) | 336 |
| BseNI | ACTGG | 3 cut(s) | 134, 605, 619 |
| BseRI | GAGGAG | 1 cut(s) | 951 |
| BseSI | GKGCMC | 2 cut(s) | 61, 382 |
| BseXI | GCAGC | 4 cut(s) | 88, 374, 553, 742 |
| BshFI | GGCC | 5 cut(s) | 256, 473, 699, 870, 1076 |
| BsiHKAI | GWGCWC | 1 cut(s) | 61 |
| BsiHKCI | CYCGRG | 1 cut(s) | 723 |
| BsiSI | CCGG | 5 cut(s) | 146, 470, 643, 871, 1073 |
| BslFI | GGGAC | 1 cut(s) | 853 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 53, 483, 644, 649, 687, 806 |
| BsmFI | GGGAC | 1 cut(s) | 853 |
| BsnI | GGCC | 5 cut(s) | 256, 473, 699, 870, 1076 |
| BsoBI | CYCGRG | 1 cut(s) | 723 |
| Bsp1286I | GDGCHC | 2 cut(s) | 61, 382 |
| Bsp143I | GATC | 3 cut(s) | 142, 466, 672 |
| Bsp19I | CCATGG | 1 cut(s) | 37 |
| BspACI | CCGC | 3 cut(s) | 104, 237, 564 |
| BspANI | GGCC | 5 cut(s) | 256, 473, 699, 870, 1076 |
| BspCNI | CTCAG | 1 cut(s) | 335 |
| BspMI | ACCTGC | 1 cut(s) | 1119 |
| BspPI | GGATC | 2 cut(s) | 137, 461 |
| BsrFI | RCCGGY | 1 cut(s) | 1072 |
| BsrI | ACTGG | 3 cut(s) | 134, 605, 619 |
| BssAI | RCCGGY | 1 cut(s) | 1072 |
| BssECI | CCNNGG | 3 cut(s) | 37, 251, 643 |
| BssMI | GATC | 3 cut(s) | 142, 466, 672 |
| BssNI | GRCGYC | 1 cut(s) | 691 |
| BssT1I | CCWWGG | 2 cut(s) | 37, 251 |
| Bst4CI | ACNGT | 2 cut(s) | 304, 1031 |
| Bst6I | CTCTTC | 1 cut(s) | 1044 |
| BstACI | GRCGYC | 1 cut(s) | 691 |
| BstBAI | YACGTR | 1 cut(s) | 806 |
| BstC8I | GCNNGC | 2 cut(s) | 106, 494 |
| BstDEI | CTNAG | 2 cut(s) | 322, 366 |
| BstDSI | CCRYGG | 1 cut(s) | 37 |
| BstF5I | GGATG | 5 cut(s) | 405, 601, 787, 794, 816 |
| BstH2I | RGCGCY | 1 cut(s) | 271 |
| BstHHI | GCGC | 2 cut(s) | 270, 431 |
| BstKTI | GATC | 3 cut(s) | 145, 469, 675 |
| BstMBI | GATC | 3 cut(s) | 142, 466, 672 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 110, 493, 572 |
| BstNSI | RCATGY | 1 cut(s) | 420 |
| BstSCI | CCNGG | 1 cut(s) | 642 |
| BstSLI | GKGCMC | 2 cut(s) | 61, 382 |
| BstV1I | GCAGC | 4 cut(s) | 88, 374, 553, 742 |
| BstV2I | GAAGAC | 1 cut(s) | 1110 |
| BsuRI | GGCC | 5 cut(s) | 256, 473, 699, 870, 1076 |
| BtgI | CCRYGG | 1 cut(s) | 37 |
| BtgZI | GCGATG | 1 cut(s) | 584 |
| BtsCI | GGATG | 5 cut(s) | 405, 601, 787, 794, 816 |
| BtsI | GCAGTG | 1 cut(s) | 340 |
| BtsIMutI | CAGTG | 1 cut(s) | 340 |
| BveI | ACCTGC | 1 cut(s) | 1119 |
| Cac8I | GCNNGC | 2 cut(s) | 106, 494 |
| CfoI | GCGC | 2 cut(s) | 270, 431 |
| Cfr10I | RCCGGY | 1 cut(s) | 1072 |
| Cfr13I | GGNCC | 2 cut(s) | 868, 954 |
| CseI | GACGC | 3 cut(s) | 498, 680, 850 |
| Csp6I | GTAC | 3 cut(s) | 137, 504, 1070 |
| CviAII | CATG | 3 cut(s) | 38, 417, 426 |
| CviQI | GTAC | 3 cut(s) | 137, 504, 1070 |
| DdeI | CTNAG | 2 cut(s) | 322, 366 |
| DpnI | GATC | 3 cut(s) | 144, 468, 674 |
| DpnII | GATC | 3 cut(s) | 142, 466, 672 |
| EaeI | YGGCCR | 2 cut(s) | 471, 1074 |
| Eam1104I | CTCTTC | 1 cut(s) | 1044 |
| EarI | CTCTTC | 1 cut(s) | 1044 |
| Eco130I | CCWWGG | 2 cut(s) | 37, 251 |
| Eco47I | GGWCC | 1 cut(s) | 954 |
| Eco57I | CTGAAG | 1 cut(s) | 114 |
| Eco88I | CYCGRG | 1 cut(s) | 723 |
| EcoO109I | RGGNCCY | 1 cut(s) | 954 |
| EcoT14I | CCWWGG | 2 cut(s) | 37, 251 |
| EcoT22I | ATGCAT | 1 cut(s) | 634 |
| ErhI | CCWWGG | 2 cut(s) | 37, 251 |
| FaeI | CATG | 3 cut(s) | 41, 420, 429 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 60, 92 |
| FaqI | GGGAC | 1 cut(s) | 853 |
| FatI | CATG | 3 cut(s) | 37, 416, 425 |
| FauI | CCCGC | 1 cut(s) | 97 |
| FauNDI | CATATG | 1 cut(s) | 394 |
| FblI | GTMKAC | 1 cut(s) | 981 |
| Fnu4HI | GCNGC | 4 cut(s) | 102, 363, 567, 756 |
| FokI | GGATG | 5 cut(s) | 412, 588, 774, 781, 823 |
| Fsp4HI | GCNGC | 4 cut(s) | 102, 363, 567, 756 |
| GlaI | GCGC | 2 cut(s) | 269, 430 |
| GluI | GCNGC | 4 cut(s) | 102, 363, 567, 756 |
| GsuI | CTGGAG | 1 cut(s) | 135 |
| HaeII | RGCGCY | 1 cut(s) | 271 |
| HaeIII | GGCC | 5 cut(s) | 256, 473, 699, 870, 1076 |
| HapII | CCGG | 5 cut(s) | 146, 470, 643, 871, 1073 |
| HgaI | GACGC | 3 cut(s) | 498, 680, 850 |
| HhaI | GCGC | 2 cut(s) | 270, 431 |
| Hin1I | GRCGYC | 1 cut(s) | 691 |
| Hin1II | CATG | 3 cut(s) | 41, 420, 429 |
| Hin6I | GCGC | 2 cut(s) | 268, 429 |
| HinP1I | GCGC | 2 cut(s) | 268, 429 |
| HincII | GTYRAC | 3 cut(s) | 307, 982, 1009 |
| HindII | GTYRAC | 3 cut(s) | 307, 982, 1009 |
| HinfI | GANTC | 4 cut(s) | 89, 122, 560, 728 |
| HpaII | CCGG | 5 cut(s) | 146, 470, 643, 871, 1073 |
| HphI | GGTGA | 2 cut(s) | 265, 961 |
| Hpy166II | GTNNAC | 4 cut(s) | 59, 307, 982, 1009 |
| Hpy188I | TCNGA | 4 cut(s) | 94, 625, 733, 1065 |
| Hpy188III | TCNNGA | 1 cut(s) | 723 |
| Hpy8I | GTNNAC | 4 cut(s) | 59, 307, 982, 1009 |
| Hpy99I | CGWCG | 2 cut(s) | 454, 492 |
| HpyAV | CCTTC | 3 cut(s) | 721, 935, 1048 |
| HpyCH4III | ACNGT | 2 cut(s) | 304, 1031 |
| HpyCH4IV | ACGT | 1 cut(s) | 805 |
| HpyCH4V | TGCA | 7 cut(s) | 59, 345, 392, 416, 632, 769, 1128 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 110, 493, 572 |
| HpyF3I | CTNAG | 2 cut(s) | 322, 366 |
| HpySE526I | ACGT | 1 cut(s) | 805 |
| Hsp92I | GRCGYC | 1 cut(s) | 691 |
| Hsp92II | CATG | 3 cut(s) | 41, 420, 429 |
| HspAI | GCGC | 2 cut(s) | 268, 429 |
| Kzo9I | GATC | 3 cut(s) | 142, 466, 672 |
| LmnI | GCTCC | 1 cut(s) | 938 |
| Lsp1109I | GCAGC | 4 cut(s) | 88, 374, 553, 742 |
| LweI | GCATC | 6 cut(s) | 354, 390, 429, 610, 619, 901 |
| MaeII | ACGT | 1 cut(s) | 805 |
| MaeIII | GTNAC | 1 cut(s) | 801 |
| MalI | GATC | 3 cut(s) | 144, 468, 674 |
| MboI | GATC | 3 cut(s) | 142, 466, 672 |
| MboII | GAAGA | 5 cut(s) | 107, 638, 1061, 1115, 1133 |
| MhlI | GDGCHC | 2 cut(s) | 61, 382 |
| MluCI | AATT | 3 cut(s) | 478, 739, 770 |
| MlyI | GAGTC | 1 cut(s) | 98 |
| MnlI | CCTC | 8 cut(s) | 201, 267, 281, 507, 642, 793, 929, 945 |
| Mph1103I | ATGCAT | 1 cut(s) | 634 |
| MseI | TTAA | 2 cut(s) | 329, 773 |
| MslI | CAYNNNNRTG | 1 cut(s) | 595 |
| MspA1I | CMGCKG | 1 cut(s) | 566 |
| MspI | CCGG | 5 cut(s) | 146, 470, 643, 871, 1073 |
| MspR9I | CCNGG | 1 cut(s) | 644 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 110, 493, 572 |
| NciI | CCSGG | 1 cut(s) | 644 |
| NcoI | CCATGG | 1 cut(s) | 37 |
| NdeI | CATATG | 1 cut(s) | 394 |
| NdeII | GATC | 3 cut(s) | 142, 466, 672 |
| NlaIII | CATG | 3 cut(s) | 41, 420, 429 |
| NsiI | ATGCAT | 1 cut(s) | 634 |
| NspI | RCATGY | 1 cut(s) | 420 |
| OliI | CACNNNNGTG | 1 cut(s) | 595 |
| PaqCI | CACCTGC | 1 cut(s) | 1119 |
| PfeI | GAWTC | 3 cut(s) | 122, 560, 728 |
| PflFI | GACNNNGTC | 1 cut(s) | 302 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 53, 483 |
| PkrI | GCNGC | 4 cut(s) | 103, 364, 568, 757 |
| PleI | GAGTC | 1 cut(s) | 97 |
| PpsI | GAGTC | 1 cut(s) | 97 |
| Ppu21I | YACGTR | 1 cut(s) | 806 |
| PpuMI | RGGWCCY | 1 cut(s) | 954 |
| Psp5II | RGGWCCY | 1 cut(s) | 954 |
| PspPI | GGNCC | 2 cut(s) | 868, 954 |
| PspPPI | RGGWCCY | 1 cut(s) | 954 |
| PsyI | GACNNNGTC | 1 cut(s) | 302 |
| RsaI | GTAC | 3 cut(s) | 138, 505, 1071 |
| RsaNI | GTAC | 3 cut(s) | 137, 504, 1070 |
| RseI | CAYNNNNRTG | 1 cut(s) | 595 |
| SalI | GTCGAC | 1 cut(s) | 980 |
| SaqAI | TTAA | 2 cut(s) | 329, 773 |
| SatI | GCNGC | 4 cut(s) | 102, 363, 567, 756 |
| Sau3AI | GATC | 3 cut(s) | 142, 466, 672 |
| Sau96I | GGNCC | 2 cut(s) | 868, 954 |
| ScaI | AGTACT | 1 cut(s) | 138 |
| SchI | GAGTC | 1 cut(s) | 98 |
| ScrFI | CCNGG | 1 cut(s) | 644 |
| SduI | GDGCHC | 2 cut(s) | 61, 382 |
| SfaNI | GCATC | 6 cut(s) | 354, 390, 429, 610, 619, 901 |
| SinI | GGWCC | 1 cut(s) | 954 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 595 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 478, 739, 770 |
| SsiI | CCGC | 3 cut(s) | 104, 237, 564 |
| SspI | AATATT | 1 cut(s) | 881 |
| StyD4I | CCNGG | 1 cut(s) | 642 |
| StyI | CCWWGG | 2 cut(s) | 37, 251 |
| TaaI | ACNGT | 2 cut(s) | 304, 1031 |
| TaiI | ACGT | 1 cut(s) | 808 |
| TaqI | TCGA | 5 cut(s) | 213, 221, 456, 981, 1094 |
| TasI | AATT | 3 cut(s) | 478, 739, 770 |
| TatI | WGTACW | 2 cut(s) | 136, 503 |
| TfiI | GAWTC | 3 cut(s) | 122, 560, 728 |
| Tru1I | TTAA | 2 cut(s) | 329, 773 |
| Tru9I | TTAA | 2 cut(s) | 329, 773 |
| TscAI | CASTG | 1 cut(s) | 347 |
| TseI | GCWGC | 4 cut(s) | 101, 362, 566, 755 |
| TspDTI | ATGAA | 7 cut(s) | 17, 81, 531, 569, 821, 891, 954 |
| TspRI | CASTG | 1 cut(s) | 347 |
| Tth111I | GACNNNGTC | 1 cut(s) | 302 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 53, 483 |
| VneI | GTGCAC | 1 cut(s) | 57 |
| VpaK11BI | GGWCC | 1 cut(s) | 954 |
| XceI | RCATGY | 1 cut(s) | 420 |
| XmiI | GTMKAC | 1 cut(s) | 981 |
| ZrmI | AGTACT | 1 cut(s) | 138 |
| Zsp2I | ATGCAT | 1 cut(s) | 634 |