Rh7DG030500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000150
Physical Location & Seq
Forward (+)
2265688 .. 2267383
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG030500.1

Sequence Viewer

Length: 726 bp
ATGGCCAAGGCCGGCTCATTGAGGGGATATATTTTTGACACAAAATCAAGATCCTTGGAGGCTTTCAAGCCGCCTCAATCATTGAAGCCAGTTGCTGTTGTTATATCTGCCTATGATAAGCTTTATCACCTTGCCGATCCAATATGCTTTCCGGAGATGCCAAAGCCATCCTTTGAGCGATATGATCCCATCACCGACTCTTGGGAGGCACTCCCTCCTTTTCCATTATATTCTGAGAAAAATGCAGACATGGAGATAGTTGGCTATGCTGTTGGTTATGGCTGTGTATTGGTTTCGATCAATTCCCCACCTCAATTTATGAGCGTCAACCTCTATGGATCACCACATTCCAGGTTATCAAAGGAGGAGGAGGAAGATTCACGGTTGATTTTAGCTTCACTTGGGGAGGATTTTGAACCAAAAGAAAGAGGGAGTGTTGATATGATGGAGGAGCAGCCGAAAGAAGAAACTGCGCTGATTTCTGATGAAATCATGGAGAACAGAGGTATTTCAGTAAATGAAGAAGAAACAAAGTCCCAATGTGATTCAGAAAATGAAGAAGAAACAAAATGTGAAGGTGAGTCAGAAAATGAAGAAACAAAATGCGAAGGTGATTCAGAAAATGAAGAAAGAGAAGACAAGGAGAAGTCTGTTAATGGCGTTAATGCTTGTCCATTGGCTAAGGAAAAGAGACAAAAGATTGAGTATTTTTCACAGGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.22

Weight (kDa)

4.44

Isoelectric Point (pI)

65.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 1 cut(s) 71
AclWI GGATC 4 cut(s) 45, 131, 179, 346
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 3 cut(s) 67, 85, 416
AjnI CCWGG 1 cut(s) 350
AluBI AGCT 2 cut(s) 121, 395
AluI AGCT 2 cut(s) 121, 395
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 4 cut(s) 45, 131, 179, 346
AlwNI CAGNNNCTG 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 2 cut(s) 3, 9
ApeKI GCWGC 1 cut(s) 454
AspLEI GCGC 1 cut(s) 475
AsuHPI GGTGA 5 cut(s) 119, 184, 333, 590, 623
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 642
BbvI GCAGC 1 cut(s) 466
BccI CCATC 3 cut(s) 175, 197, 439
BciT130I CCWGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 685
BisI GCNGC 2 cut(s) 71, 455
BlsI GCNGC 2 cut(s) 72, 456
Bme1390I CCNGG 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 642
Bpu10I CCTNAGC 1 cut(s) 681
BsaJI CCNNGG 2 cut(s) 6, 54
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 89
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 6, 54
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 3 cut(s) 380, 383, 464
BseXI GCAGC 1 cut(s) 466
BshFI GGCC 2 cut(s) 5, 11
BsiSI CCGG 2 cut(s) 12, 152
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 685
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 2 cut(s) 5, 11
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 5 cut(s) 50, 136, 184, 297, 338
BspACI CCGC 1 cut(s) 71
BspANI GGCC 2 cut(s) 5, 11
BspCNI CTCAG 1 cut(s) 226
BspEI TCCGGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 720
BspPI GGATC 4 cut(s) 45, 131, 179, 346
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 6, 54
BssMI GATC 5 cut(s) 50, 136, 184, 297, 338
BssT1I CCWWGG 2 cut(s) 6, 54
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 234, 681
BstF5I GGATG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 5 cut(s) 53, 139, 187, 300, 341
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 5 cut(s) 50, 136, 184, 297, 338
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 466
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 2 cut(s) 5, 11
BtsCI GGATG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 11
CseI GACGC 1 cut(s) 313
CviAII CATG 2 cut(s) 250, 493
DdeI CTNAG 2 cut(s) 234, 681
DpnI GATC 5 cut(s) 52, 138, 186, 299, 340
DpnII GATC 5 cut(s) 50, 136, 184, 297, 338
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 6, 54
EcoRII CCWGG 1 cut(s) 350
EcoT14I CCWWGG 2 cut(s) 6, 54
ErhI CCWWGG 2 cut(s) 6, 54
FaeI CATG 2 cut(s) 253, 496
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 1 cut(s) 520
FatI CATG 2 cut(s) 249, 492
Fnu4HI GCNGC 2 cut(s) 71, 455
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 71, 455
GlaI GCGC 1 cut(s) 474
GluI GCNGC 2 cut(s) 71, 455
HaeIII GGCC 2 cut(s) 5, 11
HapII CCGG 2 cut(s) 12, 152
HgaI GACGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 475
Hin1II CATG 2 cut(s) 253, 496
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 5 cut(s) 197, 377, 545, 581, 614
HpaII CCGG 2 cut(s) 12, 152
HphI GGTGA 5 cut(s) 119, 184, 333, 590, 623
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 5 cut(s) 235, 484, 550, 586, 619
Hpy188III TCNNGA 2 cut(s) 48, 152
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 569, 602
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 234, 681
Hsp92II CATG 2 cut(s) 253, 496
HspAI GCGC 1 cut(s) 473
Kpn2I TCCGGA 1 cut(s) 151
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 5 cut(s) 50, 136, 184, 297, 338
LmnI GCTCC 2 cut(s) 451, 718
LpnPI CCDG 6 cut(s) 25, 102, 165, 337, 364, 701
Lsp1109I GCAGC 1 cut(s) 466
LweI GCATC 1 cut(s) 147
MalI GATC 5 cut(s) 52, 138, 186, 299, 340
MboI GATC 5 cut(s) 50, 136, 184, 297, 338
MboII GAAGA 9 cut(s) 386, 476, 533, 536, 569, 572, 605, 638, 647
MflI RGATCY 1 cut(s) 50
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 301, 314
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 191, 590
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 151
MroNI GCCGGC 1 cut(s) 11
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 654, 663, 724
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 12, 152
MspR9I CCNGG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 352
NaeI GCCGGC 1 cut(s) 13
NdeII GATC 5 cut(s) 50, 136, 184, 297, 338
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 253, 496
NlaIV GGNNCC 1 cut(s) 720
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 3 cut(s) 377, 545, 614
PkrI GCNGC 2 cut(s) 72, 456
PleI GAGTC 2 cut(s) 191, 589
PpsI GAGTC 2 cut(s) 191, 589
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 720
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 50
SaqAI TTAA 3 cut(s) 654, 663, 724
SatI GCNGC 2 cut(s) 71, 455
Sau3AI GATC 5 cut(s) 50, 136, 184, 297, 338
SchI GAGTC 2 cut(s) 191, 590
ScrFI CCNGG 1 cut(s) 352
SetI ASST 9 cut(s) 123, 132, 313, 333, 356, 397, 508, 580, 613
SfaNI GCATC 1 cut(s) 147
Sse9I AATT 2 cut(s) 301, 314
SsiI CCGC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 350
StyI CCWWGG 2 cut(s) 6, 54
TaaI ACNGT 1 cut(s) 384
TaqI TCGA 1 cut(s) 296
TasI AATT 2 cut(s) 301, 314
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 3 cut(s) 377, 545, 614
Tru1I TTAA 3 cut(s) 654, 663, 724
Tru9I TTAA 3 cut(s) 654, 663, 724
TseI GCWGC 1 cut(s) 454
TspDTI ATGAA 5 cut(s) 501, 534, 570, 606, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.