Rh1DG452900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000150
Physical Location & Seq
Reverse (-)
66002853 .. 66003560
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG452900.1

Sequence Viewer

Length: 708 bp
ATGAAAGGTATATCTGTGTTTGTTCTGGTGGAGTGCCATGGGCAACCATACGATGGTGCACTATATGAAGTAAAACTTGAGCGTAAAGAGTCTGAAGAAGCTGCGGGCAAAGCTGGAGTTGAATCCCCTTTGCCAGTACTTGATCCGGTATTCAAGTTTTTTGATAAGAGTTTAGCACTTCCCAAACATTGTTTATTTGGGGGTGCGAGGCTCGATAGCTCGAAGTTATATCTAACCGCAAATGGAAATCCTTGGCCTCACAATAAGCGCCTCACCACCCCCAAGTGCTTTGTTTTTGACACAGTCAACTCAAACTCAATCTCAGCCTTAAACTTCCAGCACTGCGTCTCTCCACCTAAAGCAGCTAAGTCAGTTAGTGCCCTTATGTCTGCATATGGGGTGCTATATTATCTTGCATGTCCATCATGCGCCCCAGAGATGCCAAAGCCGTCGTTCGAGTGTTATGATCCGGCCACCAATTCTTGGCGACACTTGCCTCCTTGTCCATATAGGAAAATGCATGGCCCATGCATGGAGGTACTTGGTTTTGCTGTTTGTTATGGCTACATATTGATTTCATTTTACAACCACAAGGAATCCGCTGCGATGGCTTTTCATATTGATACACAAAAGTGGCATCCAGTCCAAGTCTGCCAGTCCAAAGATGCATATCCTTTCCGGGGGAGGGCTGTGGTAGTAGATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.09

Weight (kDa)

8.43

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 10 - 233 1.6e-07 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 53, 483
AciI CCGC 3 cut(s) 104, 237, 600
AclWI GGATC 2 cut(s) 137, 461
AcoI YGGCCR 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 138, 540
AfiI CCNNNNNNNGG 5 cut(s) 53, 483, 532, 680, 685
AgsI TTSAA 2 cut(s) 122, 154
AleI CACNNNNGTG 1 cut(s) 631
AluBI AGCT 4 cut(s) 101, 113, 219, 365
AluI AGCT 4 cut(s) 101, 113, 219, 365
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 352
Alw44I GTGCAC 1 cut(s) 57
AlwI GGATC 2 cut(s) 137, 461
AoxI GGCC 3 cut(s) 254, 471, 523
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 101, 362, 602
AspLEI GCGC 2 cut(s) 270, 431
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 265
BaeGI GKGCMC 2 cut(s) 61, 382
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 3 cut(s) 88, 374, 589
BccI CCATC 3 cut(s) 47, 430, 601
BceAI ACGGC 1 cut(s) 433
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 1 cut(s) 706
BfoI RGCGCY 1 cut(s) 271
BisI GCNGC 3 cut(s) 102, 363, 603
BlsI GCNGC 3 cut(s) 103, 364, 604
BmcAI AGTACT 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 524
BmrFI CCNGG 1 cut(s) 680
BmsI GCATC 4 cut(s) 429, 646, 655, 691
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 680
BsaBI GATNNNNATC 1 cut(s) 669
BsaJI CCNNGG 3 cut(s) 37, 251, 679
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 483, 532, 680, 685
Bse1I ACTGG 3 cut(s) 134, 641, 655
Bse8I GATNNNNATC 1 cut(s) 669
BseDI CCNNGG 3 cut(s) 37, 251, 679
BseGI GGATG 1 cut(s) 637
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 5 cut(s) 53, 483, 532, 680, 685
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 3 cut(s) 134, 641, 655
BseSI GKGCMC 2 cut(s) 61, 382
BseXI GCAGC 3 cut(s) 88, 374, 589
BshFI GGCC 3 cut(s) 256, 473, 525
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 3 cut(s) 146, 470, 679
BslI CCNNNNNNNGG 5 cut(s) 53, 483, 532, 680, 685
BsmAI GTCTC 1 cut(s) 352
BsmBI CGTCTC 1 cut(s) 352
BsnI GGCC 3 cut(s) 256, 473, 525
Bsp1286I GDGCHC 2 cut(s) 61, 382
Bsp143I GATC 2 cut(s) 142, 466
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 3 cut(s) 104, 237, 600
BspANI GGCC 3 cut(s) 256, 473, 525
BspCNI CTCAG 1 cut(s) 335
BspPI GGATC 2 cut(s) 137, 461
BsrI ACTGG 3 cut(s) 134, 641, 655
BssECI CCNNGG 3 cut(s) 37, 251, 679
BssMI GATC 2 cut(s) 142, 466
BssT1I CCWWGG 2 cut(s) 37, 251
Bst4CI ACNGT 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 322, 366
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 637
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 2 cut(s) 270, 431
BstKTI GATC 2 cut(s) 145, 469
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 2 cut(s) 142, 466
BstMWI GCNNNNNNNGC 3 cut(s) 110, 493, 608
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 678
BstSLI GKGCMC 2 cut(s) 61, 382
BstV1I GCAGC 3 cut(s) 88, 374, 589
BsuRI GGCC 3 cut(s) 256, 473, 525
BtgI CCRYGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 620
BtsCI GGATG 1 cut(s) 637
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 2 cut(s) 270, 431
Cfr13I GGNCC 1 cut(s) 524
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 137, 539
CviAII CATG 6 cut(s) 38, 417, 426, 521, 528, 532
CviQI GTAC 2 cut(s) 137, 539
DdeI CTNAG 2 cut(s) 322, 366
DpnI GATC 2 cut(s) 144, 468
DpnII GATC 2 cut(s) 142, 466
EaeI YGGCCR 1 cut(s) 471
Eco130I CCWWGG 2 cut(s) 37, 251
Eco57I CTGAAG 1 cut(s) 114
EcoT14I CCWWGG 2 cut(s) 37, 251
EcoT22I ATGCAT 3 cut(s) 522, 533, 670
ErhI CCWWGG 2 cut(s) 37, 251
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 6 cut(s) 41, 420, 429, 524, 531, 535
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 6 cut(s) 37, 416, 425, 520, 527, 531
FauI CCCGC 1 cut(s) 97
FauNDI CATATG 1 cut(s) 394
Fnu4HI GCNGC 3 cut(s) 102, 363, 603
FokI GGATG 1 cut(s) 624
Fsp4HI GCNGC 3 cut(s) 102, 363, 603
FspBI CTAG 1 cut(s) 706
GlaI GCGC 2 cut(s) 269, 430
GluI GCNGC 3 cut(s) 102, 363, 603
GsuI CTGGAG 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 3 cut(s) 256, 473, 525
HapII CCGG 3 cut(s) 146, 470, 679
HgaI GACGC 1 cut(s) 334
HhaI GCGC 2 cut(s) 270, 431
Hin1II CATG 6 cut(s) 41, 420, 429, 524, 531, 535
Hin6I GCGC 2 cut(s) 268, 429
HinP1I GCGC 2 cut(s) 268, 429
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 89, 122, 596
HpaII CCGG 3 cut(s) 146, 470, 679
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 59, 307
Hpy188I TCNGA 1 cut(s) 94
Hpy8I GTNNAC 2 cut(s) 59, 307
Hpy99I CGWCG 1 cut(s) 454
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 59, 392, 416, 520, 531, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 493, 608
HpyF3I CTNAG 2 cut(s) 322, 366
Hsp92II CATG 6 cut(s) 41, 420, 429, 524, 531, 535
HspAI GCGC 2 cut(s) 268, 429
Kzo9I GATC 2 cut(s) 142, 466
Lsp1109I GCAGC 3 cut(s) 88, 374, 589
LweI GCATC 4 cut(s) 429, 646, 655, 691
MaeI CTAG 1 cut(s) 706
MalI GATC 2 cut(s) 144, 468
MboI GATC 2 cut(s) 142, 466
MboII GAAGA 1 cut(s) 107
MhlI GDGCHC 2 cut(s) 61, 382
MluCI AATT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 6 cut(s) 201, 267, 281, 507, 529, 678
Mph1103I ATGCAT 3 cut(s) 522, 533, 670
MseI TTAA 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 631
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 3 cut(s) 146, 470, 679
MspR9I CCNGG 1 cut(s) 680
MwoI GCNNNNNNNGC 3 cut(s) 110, 493, 608
NciI CCSGG 1 cut(s) 680
NcoI CCATGG 1 cut(s) 37
NdeI CATATG 1 cut(s) 394
NdeII GATC 2 cut(s) 142, 466
NlaIII CATG 6 cut(s) 41, 420, 429, 524, 531, 535
NsiI ATGCAT 3 cut(s) 522, 533, 670
NspI RCATGY 1 cut(s) 420
OliI CACNNNNGTG 1 cut(s) 631
PfeI GAWTC 2 cut(s) 122, 596
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 2 cut(s) 53, 483
PkrI GCNGC 3 cut(s) 103, 364, 604
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 524
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 2 cut(s) 138, 540
RsaNI GTAC 2 cut(s) 137, 539
RseI CAYNNNNRTG 1 cut(s) 631
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 3 cut(s) 102, 363, 603
Sau3AI GATC 2 cut(s) 142, 466
Sau96I GGNCC 1 cut(s) 524
ScaI AGTACT 1 cut(s) 138
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 2 cut(s) 61, 382
SetI ASST 7 cut(s) 10, 103, 115, 221, 358, 367, 540
SfaNI GCATC 4 cut(s) 429, 646, 655, 691
SmiMI CAYNNNNRTG 1 cut(s) 631
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 478
SsiI CCGC 3 cut(s) 104, 237, 600
SspMI CTAG 1 cut(s) 706
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 2 cut(s) 37, 251
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 3 cut(s) 213, 221, 456
TasI AATT 1 cut(s) 478
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 2 cut(s) 122, 596
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 1 cut(s) 347
TseI GCWGC 3 cut(s) 101, 362, 602
TspDTI ATGAA 4 cut(s) 17, 81, 567, 605
TspRI CASTG 1 cut(s) 347
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 2 cut(s) 53, 483
VneI GTGCAC 1 cut(s) 57
XceI RCATGY 1 cut(s) 420
XspI CTAG 1 cut(s) 706
ZrmI AGTACT 1 cut(s) 138
Zsp2I ATGCAT 3 cut(s) 522, 533, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.