RLG00000033034

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000150
Physical Location & Seq
Reverse (-)
22448306 .. 22449180
875 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033034

Sequence Viewer

Length: 762 bp
ATGGAATGCCAGACCCGGCCTTTGATTTATGATCCACACTCCGACTCCTGGAAGAGACGCTTTCCATTTCCTCGCTATCAGAAGGACTGGTCTTTCACTAGAATAACTGGTTATGCTATTTGTTCTGGCTGTATTTTGGTTTCTATGCAGCCTCATGAGAAATACAATACTATCTATGCCTTATCTGGAACGGTTATAGCATTCTCTCTTATGACGAAGCAAATGGCAGACGGTAGTATAGAGTACTCTGTGGACAAACCACGTCCGCTGCATGGCTTGCGTACTTGTTTTCACATGGATTCTGATTGTTATAGTAGAACTGAGCGTTTGGTTCATTTGGGGGGCTTGAACTTTTGCCTTCTGCAAACTATCATGAAATATGTCAACAGACAACGTGTGTGGATCACCACATTTGATATTATCTACAAAGAAGGAAAGAGGCGTATCCGTACTCTAGACACTACTATGCGTGAAGTAGATATCACTGTCTTGGCATGGACTCTTGGTCGATTCGAACTTGAATCAGGCTTCACGCTAGAATGTGAAGAAGGAAAAGAGATTGTTAGCACCAGCAGTATGATAGAGCCAACTGATGATCCTCGATTGTGCAAGCTTCAACAGGCTGCACGAGATAAGATTAGGACGCAGATTCGGAAACGGAGAGGGATGACGTCGAAGTTGAGTTCACCGAAGTCAACCTTGTTGGGCAATCTTTTCAGACCCTGTCGAGAACCAAAGTTTGGTGTTTTCTTGGATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

29.45

Weight (kDa)

9.3

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 740
AciI CCGC 1 cut(s) 266
AclWI GGATC 3 cut(s) 26, 410, 590
AcyI GRCGYC 1 cut(s) 671
AfaI GTAC 3 cut(s) 245, 283, 451
AfiI CCNNNNNNNGG 3 cut(s) 48, 272, 740
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 3 cut(s) 349, 521, 617
AhdI GACNNNNNGTC 1 cut(s) 504
AjiI CACGTC 1 cut(s) 263
AjnI CCWGG 1 cut(s) 47
AjuI GAANNNNNNNTTGG 2 cut(s) 723, 755
AluBI AGCT 1 cut(s) 613
AluI AGCT 1 cut(s) 613
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 3 cut(s) 26, 410, 590
AlwNI CAGNNNCTG 1 cut(s) 723
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 3 cut(s) 148, 268, 623
ArsI GACNNNNNNTTYG 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 397, 678
AsuII TTCGAA 1 cut(s) 513
BauI CACGAG 1 cut(s) 627
BbvI GCAGC 3 cut(s) 160, 255, 610
BciT130I CCWGG 1 cut(s) 49
BciVI GTATCC 1 cut(s) 455
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 3 cut(s) 99, 455, 536
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 3 cut(s) 149, 269, 624
BlsI GCNGC 3 cut(s) 150, 270, 625
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 16, 49
BmeRI GACNNNNNGTC 1 cut(s) 504
BmgBI CACGTC 1 cut(s) 263
BmrFI CCNGG 2 cut(s) 16, 49
Bpu14I TTCGAA 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 272, 740
Bse1I ACTGG 2 cut(s) 92, 112
BseBI CCWGG 1 cut(s) 49
BseGI GGATG 2 cut(s) 672, 760
BseLI CCNNNNNNNGG 3 cut(s) 48, 272, 740
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 92, 112
BseXI GCAGC 3 cut(s) 160, 255, 610
BsgI GTGCAG 1 cut(s) 609
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 3 cut(s) 48, 272, 740
BsmAI GTCTC 1 cut(s) 49
BsmBI CGTCTC 1 cut(s) 49
BsmI GAATGC 2 cut(s) 11, 200
BsnI GGCC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 513
Bsp143I GATC 3 cut(s) 31, 402, 595
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 313
BspHI TCATGA 2 cut(s) 154, 372
BspPI GGATC 3 cut(s) 26, 410, 590
BspT104I TTCGAA 1 cut(s) 513
BsrI ACTGG 2 cut(s) 92, 112
BssMI GATC 3 cut(s) 31, 402, 595
BssNI GRCGYC 1 cut(s) 671
BssSI CACGAG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 627
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 3 cut(s) 193, 233, 487
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 671
BstAPI GCANNNNNTGC 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 513
BstC8I GCNNGC 2 cut(s) 278, 611
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 672, 760
BstKTI GATC 3 cut(s) 34, 405, 598
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 3 cut(s) 31, 402, 595
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 14, 47
BstV1I GCAGC 3 cut(s) 160, 255, 610
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 1 cut(s) 19
BtrI CACGTC 1 cut(s) 263
BtsCI GGATG 2 cut(s) 672, 760
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 278, 611
CaiI CAGNNNCTG 1 cut(s) 723
CciI TCATGA 2 cut(s) 154, 372
CseI GACGC 2 cut(s) 66, 652
Csp6I GTAC 3 cut(s) 244, 282, 450
CspCI CAANNNNNGTGG 2 cut(s) 380, 415
CviAII CATG 5 cut(s) 155, 272, 295, 373, 495
CviJI RGCY 9 cut(s) 19, 129, 151, 276, 345, 528, 586, 613, 623
CviKI_1 RGCY 9 cut(s) 19, 129, 151, 276, 345, 528, 586, 613, 623
CviQI GTAC 3 cut(s) 244, 282, 450
DdeI CTNAG 1 cut(s) 321
DpnI GATC 3 cut(s) 33, 404, 597
DpnII GATC 3 cut(s) 31, 402, 595
DriI GACNNNNNGTC 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 47
EcoRV GATATC 1 cut(s) 481
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 5 cut(s) 158, 275, 298, 376, 498
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 683, 715
FatI CATG 5 cut(s) 154, 271, 294, 372, 494
Fnu4HI GCNGC 3 cut(s) 149, 269, 624
FokI GGATG 1 cut(s) 679
Fsp4HI GCNGC 3 cut(s) 149, 269, 624
FspBI CTAG 3 cut(s) 99, 455, 536
GluI GCNGC 3 cut(s) 149, 269, 624
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 16
HgaI GACGC 2 cut(s) 66, 652
Hin1I GRCGYC 1 cut(s) 671
Hin1II CATG 5 cut(s) 158, 275, 298, 376, 498
HincII GTYRAC 2 cut(s) 385, 696
HindII GTYRAC 2 cut(s) 385, 696
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 6 cut(s) 44, 299, 499, 510, 521, 649
HpaII CCGG 1 cut(s) 16
HphI GGTGA 2 cut(s) 397, 678
Hpy166II GTNNAC 4 cut(s) 253, 385, 686, 696
Hpy188I TCNGA 5 cut(s) 43, 81, 304, 654, 719
Hpy188III TCNNGA 5 cut(s) 155, 186, 373, 455, 728
Hpy8I GTNNAC 4 cut(s) 253, 385, 686, 696
Hpy99I CGWCG 1 cut(s) 676
HpyAV CCTTC 4 cut(s) 76, 368, 425, 542
HpyCH4III ACNGT 3 cut(s) 193, 233, 487
HpyCH4IV ACGT 3 cut(s) 262, 394, 671
HpyCH4V TGCA 5 cut(s) 148, 271, 364, 609, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 3 cut(s) 262, 394, 671
Hsp92I GRCGYC 1 cut(s) 671
Hsp92II CATG 5 cut(s) 158, 275, 298, 376, 498
Kzo9I GATC 3 cut(s) 31, 402, 595
Lsp1109I GCAGC 3 cut(s) 160, 255, 610
MaeI CTAG 3 cut(s) 99, 455, 536
MaeII ACGT 3 cut(s) 262, 394, 671
MalI GATC 3 cut(s) 33, 404, 597
MboI GATC 3 cut(s) 31, 402, 595
MboII GAAGA 2 cut(s) 64, 557
MlyI GAGTC 2 cut(s) 38, 493
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 5 cut(s) 81, 162, 432, 609, 656
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 2 cut(s) 16, 49
Mva1269I GAATGC 2 cut(s) 11, 200
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 277
NciI CCSGG 1 cut(s) 16
NdeII GATC 3 cut(s) 31, 402, 595
NlaIII CATG 5 cut(s) 158, 275, 298, 376, 498
NspV TTCGAA 1 cut(s) 513
PagI TCATGA 2 cut(s) 154, 372
PctI GAATGC 2 cut(s) 11, 200
PfeI GAWTC 4 cut(s) 299, 510, 521, 649
PflFI GACNNNGTC 1 cut(s) 723
PflMI CCANNNNNTGG 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 47
PkrI GCNGC 3 cut(s) 150, 270, 625
PleI GAGTC 2 cut(s) 38, 493
PpsI GAGTC 2 cut(s) 38, 493
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 723
PsyI GACNNNGTC 1 cut(s) 723
RsaI GTAC 3 cut(s) 245, 283, 451
RsaNI GTAC 3 cut(s) 244, 282, 450
RseI CAYNNNNRTG 1 cut(s) 464
SatI GCNGC 3 cut(s) 149, 269, 624
Sau3AI GATC 3 cut(s) 31, 402, 595
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 2 cut(s) 38, 493
ScrFI CCNGG 2 cut(s) 16, 49
SetI ASST 5 cut(s) 265, 397, 615, 674, 701
SfuI TTCGAA 1 cut(s) 513
SmiMI CAYNNNNRTG 1 cut(s) 464
SsiI CCGC 1 cut(s) 266
SspMI CTAG 3 cut(s) 99, 455, 536
StyD4I CCNGG 2 cut(s) 14, 47
TaaI ACNGT 3 cut(s) 193, 233, 487
TaiI ACGT 3 cut(s) 265, 397, 674
TaqI TCGA 5 cut(s) 508, 513, 601, 674, 727
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 4 cut(s) 299, 510, 521, 649
TscAI CASTG 1 cut(s) 490
TseI GCWGC 3 cut(s) 148, 268, 623
TspDTI ATGAA 2 cut(s) 323, 389
TspGWI ACGGA 2 cut(s) 437, 673
TspRI CASTG 1 cut(s) 490
Tth111I GACNNNGTC 1 cut(s) 723
Van91I CCANNNNNTGG 1 cut(s) 740
XbaI TCTAGA 1 cut(s) 454
XspI CTAG 3 cut(s) 99, 455, 536
ZraI GACGTC 1 cut(s) 672
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.