Rorug07G0155400

Belongs to the argonaute family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
12306040 .. 12307035
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0155400.1

Sequence Viewer

Length: 552 bp
ATGAAAAGAGGGGGAAACAAGAAGTGCCTAGCCTATGTTGCTATTTTCATCGTGTTTCAAATCATAGTGATCACGATCTTCGCACTCACCGTGATGAAGATAAAGGGTCCCAAAGTCAGGTTCCAAACCGTGACTGCCAGTAACTTCAACTCCGGCAGCTCAAGCTCTCCGTCTTTCAGCGCCGATTTGGTGACCAAATTTGCTGTCAAGAACACGAACTTCGGTCACTTCAAATACCCCAACAGCACTGTCTCAATCTTGTATGATGGCCAAGTAATCGGGTCTGCTGATGTCCCAAGCCAGAAAGCCAAAGCTCGATCGACAAGGAGAACTGACATCACCATTAGCATTAGCTCGGACAAGTTGACAGCTGGAACCACAAACCTCACAAGCGCCATCAACGCTGGGGTTGTGAACCTAACCAGTGAGTCCACTTTGAAGGGGAAGGTCGAGTTAATGAAGATCATCAAGAAGAACAAGTCTGGTAAAATGAGCTGCACCATGTCGCTCAATTTGTCAACCAAGGCTGTTGAGAAGTTGATGTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

183

Amino Acids

19.7

Weight (kDa)

10.18

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 66 - 167 8e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 4 cut(s) 59, 148, 232, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 6 cut(s) 159, 165, 314, 354, 371, 495
AluI AGCT 6 cut(s) 159, 165, 314, 354, 371, 495
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 156, 495
ApoI RAATTY 1 cut(s) 197
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspLEI GCGC 2 cut(s) 182, 395
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 3 cut(s) 79, 202, 331
AvaII GGWCC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 270
BbvI GCAGC 2 cut(s) 168, 482
BccI CCATC 2 cut(s) 260, 404
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 2 cut(s) 183, 396
BisI GCNGC 2 cut(s) 157, 496
BlsI GCNGC 2 cut(s) 158, 497
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 4 cut(s) 108, 109, 122, 376
BpuEI CTTGAG 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 138, 423
Bse8I GATNNNNATC 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 522
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 138, 423
BseXI GCAGC 2 cut(s) 168, 482
BseYI CCCAGC 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 481
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 2 cut(s) 93, 278
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 93, 278
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 4 cut(s) 69, 75, 317, 462
BspANI GGCC 1 cut(s) 270
BspLI GGNNCC 4 cut(s) 108, 109, 122, 376
BsrI ACTGG 2 cut(s) 138, 423
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 4 cut(s) 69, 75, 317, 462
BssT1I CCWWGG 1 cut(s) 522
Bst4CI ACNGT 3 cut(s) 91, 130, 250
BstEII GGTNACC 1 cut(s) 190
BstH2I RGCGCY 2 cut(s) 183, 396
BstHHI GCGC 2 cut(s) 182, 395
BstKTI GATC 4 cut(s) 72, 78, 320, 465
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 4 cut(s) 69, 75, 317, 462
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 3 cut(s) 38, 162, 401
BstPI GGTNACC 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 168, 482
BsuRI GGCC 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 246, 430
CfoI GCGC 2 cut(s) 182, 395
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 1 cut(s) 502
DpnI GATC 4 cut(s) 71, 77, 319, 464
DpnII GATC 4 cut(s) 69, 75, 317, 462
EaeI YGGCCR 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 1 cut(s) 505
FaiI YATR 4 cut(s) 36, 65, 264, 503
FaqI GGGAC 2 cut(s) 93, 278
FatI CATG 1 cut(s) 501
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 157, 496
Fsp4HI GCNGC 2 cut(s) 157, 496
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 181, 394
GluI GCNGC 2 cut(s) 157, 496
GsaI CCCAGC 1 cut(s) 408
HaeII RGCGCY 2 cut(s) 183, 396
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 153
HhaI GCGC 2 cut(s) 182, 395
Hin1II CATG 1 cut(s) 505
Hin6I GCGC 2 cut(s) 180, 393
HinP1I GCGC 2 cut(s) 180, 393
HincII GTYRAC 2 cut(s) 366, 519
HindII GTYRAC 2 cut(s) 366, 519
HinfI GANTC 1 cut(s) 428
HpaII CCGG 1 cut(s) 153
HphI GGTGA 3 cut(s) 79, 202, 331
Hpy166II GTNNAC 4 cut(s) 366, 415, 432, 519
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 73, 208, 469
Hpy8I GTNNAC 4 cut(s) 366, 415, 432, 519
HpyAV CCTTC 2 cut(s) 433, 439
HpyCH4III ACNGT 3 cut(s) 91, 130, 250
HpyCH4V TGCA 2 cut(s) 498, 546
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 162, 401
Hsp92II CATG 1 cut(s) 505
HspAI GCGC 2 cut(s) 180, 393
KflI GGGWCCC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 4 cut(s) 69, 75, 317, 462
LpnPI CCDG 8 cut(s) 103, 151, 166, 314, 357, 390, 436, 468
Lsp1109I GCAGC 2 cut(s) 168, 482
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 4 cut(s) 130, 140, 190, 224
MalI GATC 4 cut(s) 71, 77, 319, 464
MboI GATC 4 cut(s) 69, 75, 317, 462
MboII GAAGA 4 cut(s) 70, 109, 472, 484
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 2 cut(s) 197, 511
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 1 cut(s) 395
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 1 cut(s) 455
MslI CAYNNNNRTG 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 38, 162, 401
NdeII GATC 4 cut(s) 69, 75, 317, 462
NlaIII CATG 1 cut(s) 505
NlaIV GGNNCC 4 cut(s) 108, 109, 122, 376
NmuCI GTSAC 3 cut(s) 130, 190, 224
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PkrI GCNGC 2 cut(s) 158, 497
Ple19I CGATCG 1 cut(s) 320
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 107
PspEI GGTNACC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 4 cut(s) 108, 109, 122, 376
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
PvuI CGATCG 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 2 cut(s) 157, 496
Sau3AI GATC 4 cut(s) 69, 75, 317, 462
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 437
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 2 cut(s) 197, 511
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 3 cut(s) 91, 130, 250
TaqI TCGA 3 cut(s) 316, 320, 450
TaqII GACCGA 1 cut(s) 212
TasI AATT 2 cut(s) 197, 511
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 2 cut(s) 253, 430
TseFI GTSAC 3 cut(s) 130, 190, 224
TseI GCWGC 2 cut(s) 156, 495
Tsp45I GTSAC 3 cut(s) 130, 190, 224
TspDTI ATGAA 4 cut(s) 17, 37, 110, 473
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 2 cut(s) 253, 430
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 197
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.