Rroxscaffold_3G00244010

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000150
Physical Location & Seq
Forward (+)
36433266 .. 36435342
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00244010.1

Sequence Viewer

Length: 1893 bp
ATGCCAAAGCACGCAGAAGGAAGCTCTGTCTTTGTACTGGTGACTCATTTTGAGGGCACCTGCTTTGGCTCATTATTTGAAGTGAAATTAGATGGACAAGGTAAAGAAGGTTCAGCAACTCATGAAACCCAACCAGTACTTGAAACCGTATCACGATTCACTACAAAGGATTTGGGTCGCGGAATGTGGAAATTTTGTACCTTGGGTGCCAAGTTATATATTTTGCCAGATGGTGGTCCTGATTTGTTTGACATGGAAGTGTGTTTCCCCAAATGCAGTGGACATATTTTCGACATCAAGACTAGGAAAGTGGTGTCATCATTGAAACCCCCAGCTCCCAAATGGTTTGGAACTCATGTGTCTGTATATGGGAAAATTTACTCTCTTTCAGATCCATATTGCTCATGTGATGTACCAGAGCCGTCTTTTGAGCAGTATGACCCTAGCACTCAGTCTTGGCAGAAGCTGTGCTCTTTTCCATATTCTGAGGAATATGGTAATACAGAGATACAGGGTTATGCTGTTTGTGATGAAATCTTATTGTTTAGTATATGCGGCTGTAAGGAAAACTATGATGCACTGTGGGCTTATGATGTTATTAAAAATAAGTGGCGTCCAGTCCAAGTTGATAATCTAGGCTGCTATTTCCGAAGAAGGGCCGTGGTTGTGGACAAGACTATCTATGCCTTATCCATATTGCACATGGTTGCTGTGGCATTCTCTATTACGAGCAACCAAAATGAGGAAGGGCATATTAGCTATTCAATAGGCTCATTGTTACAGTTGGATTTTCCACAGGATATAGACTGGAGAAGTGATCAGCATTTGGTTCATTTGGGTAACCTAGTCTTTTATCTTGTCCAGAGTGACGAAGTTGATGTTCGCCAACCTCTTTCGATCACCAAATTTAAGATTGTGGGAGGAAGCAAAATCAATATCATAAATTCAATGCTTTTTGAGGTGGATCTCGGGGATTCTGGGCCATTCCGTGTTCAATTATGCGTCACACCAGAGTGGGAGGATGTCACGCTCATAGAAGAAGAGATTGCTACCTCCATCAACCTGGCAAAACAAGTTTCCGAGCTGCACCAAGTAATTCCAGTTCCTTACCAAGCTGGAATCACCCCTCTGCCTGCACATGAAGCATGTTCCTCATCTCAGCCACCTGAGCCTTCAGAAGTGGCAGAACAGTTTCAGCATGTTTCCATCCAGCAAGAGGAAGCACCTAGTCAGTCCATTCAACAAGTGTCAGTCTCTAGCAAGTCTATGATGTTCGCTCTACGCCCTGGTAAGGGTACGACTGGCAAAAGGTTTCTAGTCAAGGCAAACCATTTCTTTGCTGAATTAACAGACAAGGATCTGCACCAATATGATGTTACTATTACACGAGCTGCAGGAGTCACATCACGCAGTGTAAACTGTGCTGTGATGTTTCAGCTAGTGAAACTCTACAGGGACTCCCATCTTTCAAAGCGGCTTCCTGCTTATGATGGGCAGAAGAGCCTGTATACTACTGGGCCTCTTCCTTTCCAGTCAAAGGAGTTTAAAATCACTCTTCTGGATGATGATGGTGAGGGACAGGGACTCCCATCTTTCAAACCGTACGTATTGATTGCTTGTATTTTTAGTTGCAATTATTTTCTTATACTTTACCATGTATTTGATGATGGCTTTCTTCTTGTTGCTCGAAGGGAGAGGGAGTTCAGAGTTGTGATCAAATTCGCTGCACGTGTTGACCTACACGATTTAGTTCTCTTTTTGCAAGGGAGGAAAGCTGAAGCACCCGAGAAGGCCCTTCAGGTTCTGAACATTGTTATGAGAGAGTTGCCTTCTTCTAGGTACAATGCTTCTGTTTTATTCTTTTATGACATGGCTAAATATATCCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

630

Amino Acids

70.94

Weight (kDa)

5.74

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 94 - 288 3.7e-06 Protein of unknown function (DUF1668)
Gly-rich_Ago1 PF12764 357 - 416 2e-09 Glycine-rich region of argonaut
ArgoN PF16486 437 - 606 3.6e-27 N-terminal domain of argonaute
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 68
Acc36I ACCTGC 1 cut(s) 68
AccB1I GGYRCC 2 cut(s) 56, 206
AccB7I CCANNNNNTGG 1 cut(s) 233
AccI GTMKAC 1 cut(s) 1508
AccII CGCG 1 cut(s) 180
AciI CCGC 3 cut(s) 180, 555, 1474
AclWI GGATC 3 cut(s) 386, 972, 1365
AcsI RAATTY 5 cut(s) 191, 375, 905, 943, 1718
AcuI CTGAAG 3 cut(s) 1158, 1781, 1797
AcvI CACGTG 1 cut(s) 1730
AcyI GRCGYC 1 cut(s) 613
AdeI CACNNNGTG 1 cut(s) 1412
AfaI GTAC 7 cut(s) 36, 138, 199, 414, 1297, 1604, 1841
AfiI CCNNNNNNNGG 7 cut(s) 233, 655, 742, 1216, 1291, 1292, 1537
AflIII ACRYGT 1 cut(s) 1729
AgsI TTSAA 9 cut(s) 80, 143, 325, 765, 948, 995, 1241, 1470, 1597
AjnI CCWGG 2 cut(s) 1062, 1285
AleI CACNNNNGTG 1 cut(s) 1012
AloI GAACNNNNNNTCC 2 cut(s) 1685, 1717
AluBI AGCT 9 cut(s) 24, 335, 466, 759, 1084, 1115, 1391, 1438, 1775
AluI AGCT 9 cut(s) 24, 335, 466, 759, 1084, 1115, 1391, 1438, 1775
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 1 cut(s) 1258
AlwI GGATC 3 cut(s) 386, 972, 1365
AlwNI CAGNNNCTG 2 cut(s) 466, 1804
Ama87I CYCGRG 2 cut(s) 968, 1784
AoxI GGCC 4 cut(s) 657, 980, 1517, 1791
ApeKI GCWGC 4 cut(s) 639, 1084, 1391, 1724
ApoI RAATTY 5 cut(s) 191, 375, 905, 943, 1718
Asp700I GAANNNNTTC 1 cut(s) 1191
AspS9I GGNCC 5 cut(s) 236, 657, 980, 1517, 1792
AsuHPI GGTGA 4 cut(s) 52, 892, 1114, 1583
AvaI CYCGRG 2 cut(s) 968, 1784
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 59
BanI GGYRCC 2 cut(s) 56, 206
BauI CACGAG 1 cut(s) 1386
BbrPI CACGTG 1 cut(s) 1730
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 4 cut(s) 626, 1071, 1378, 1711
BccI CCATC 9 cut(s) 86, 224, 1064, 1214, 1470, 1484, 1562, 1597, 1661
BceAI ACGGC 2 cut(s) 406, 644
BciT130I CCWGG 2 cut(s) 1064, 1287
BclI TGATCA 2 cut(s) 817, 1713
BcoDI GTCTC 1 cut(s) 1258
BfaI CTAG 9 cut(s) 303, 444, 635, 845, 1227, 1257, 1316, 1439, 1836
BfmI CTRYAG 2 cut(s) 1392, 1450
BfuAI ACCTGC 1 cut(s) 68
BisI GCNGC 6 cut(s) 556, 640, 1085, 1392, 1475, 1725
BlsI GCNGC 6 cut(s) 557, 641, 1086, 1393, 1476, 1726
BmcAI AGTACT 1 cut(s) 138
Bme1390I CCNGG 2 cut(s) 1064, 1287
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 2 cut(s) 968, 1784
BmgT120I GGNCC 5 cut(s) 236, 657, 980, 1517, 1792
BmiI GGNNCC 2 cut(s) 58, 208
BmrFI CCNGG 2 cut(s) 1064, 1287
BmrI ACTGGG 1 cut(s) 1524
BmsI GCATC 1 cut(s) 565
BmuI ACTGGG 1 cut(s) 1524
BpmI CTGGAG 1 cut(s) 829
Bpu10I CCTNAGC 1 cut(s) 1167
BsaAI YACGTR 2 cut(s) 1606, 1730
BsaHI GRCGYC 1 cut(s) 613
BsaJI CCNNGG 4 cut(s) 201, 660, 1285, 1885
BsaXI ACNNNNNCTCC 6 cut(s) 1442, 1472, 1569, 1599, 1685, 1715
Bsc4I CCNNNNNNNGG 7 cut(s) 233, 655, 742, 1216, 1291, 1292, 1537
Bse1I ACTGG 8 cut(s) 42, 134, 617, 812, 1100, 1306, 1519, 1531
BseBI CCWGG 2 cut(s) 1064, 1287
BseDI CCNNGG 4 cut(s) 201, 660, 1285, 1885
BseGI GGATG 3 cut(s) 1027, 1206, 1567
BseLI CCNNNNNNNGG 7 cut(s) 233, 655, 742, 1216, 1291, 1292, 1537
BseMII CTCAG 4 cut(s) 464, 477, 1158, 1172
BseNI ACTGG 8 cut(s) 42, 134, 617, 812, 1100, 1306, 1519, 1531
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 4 cut(s) 626, 1071, 1378, 1711
BseYI CCCAGC 1 cut(s) 331
BsgI GTGCAG 4 cut(s) 1070, 1119, 1346, 1710
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 4 cut(s) 659, 982, 1519, 1793
BshNI GGYRCC 2 cut(s) 56, 206
BsiHKAI GWGCWC 1 cut(s) 473
BsiHKCI CYCGRG 2 cut(s) 968, 1784
BsiWI CGTACG 1 cut(s) 1602
BslFI GGGAC 3 cut(s) 1469, 1590, 1596
BslI CCNNNNNNNGG 7 cut(s) 233, 655, 742, 1216, 1291, 1292, 1537
BsmAI GTCTC 1 cut(s) 1258
BsmFI GGGAC 3 cut(s) 1469, 1590, 1596
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 4 cut(s) 659, 982, 1519, 1793
BsoBI CYCGRG 2 cut(s) 968, 1784
Bsp1286I GDGCHC 2 cut(s) 59, 473
Bsp143I GATC 6 cut(s) 391, 817, 897, 964, 1357, 1713
Bsp19I CCATGG 1 cut(s) 1885
BspACI CCGC 3 cut(s) 180, 555, 1474
BspANI GGCC 4 cut(s) 659, 982, 1519, 1793
BspCNI CTCAG 4 cut(s) 463, 478, 1159, 1171
BspFNI CGCG 1 cut(s) 180
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 58, 208
BspMAI CTGCAG 1 cut(s) 1396
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 3 cut(s) 386, 972, 1365
BspQI GCTCTTC 1 cut(s) 1493
BspT107I GGYRCC 2 cut(s) 56, 206
BsrI ACTGG 8 cut(s) 42, 134, 617, 812, 1100, 1306, 1519, 1531
BssECI CCNNGG 4 cut(s) 201, 660, 1285, 1885
BssMI GATC 6 cut(s) 391, 817, 897, 964, 1357, 1713
BssNAI GTATAC 1 cut(s) 1509
BssNI GRCGYC 1 cut(s) 613
BssSI CACGAG 1 cut(s) 1386
BssT1I CCWWGG 2 cut(s) 201, 1885
Bst1107I GTATAC 1 cut(s) 1509
Bst2BI CACGAG 1 cut(s) 1386
Bst2UI CCWGG 2 cut(s) 1064, 1287
Bst4CI ACNGT 6 cut(s) 148, 582, 783, 1191, 1421, 1602
Bst6I CTCTTC 4 cut(s) 1035, 1493, 1527, 1560
BstACI GRCGYC 1 cut(s) 613
BstBAI YACGTR 2 cut(s) 1606, 1730
BstC8I GCNNGC 2 cut(s) 12, 1134
BstDEI CTNAG 4 cut(s) 450, 486, 1158, 1167
BstDSI CCRYGG 2 cut(s) 660, 1885
BstEII GGTNACC 1 cut(s) 839
BstF5I GGATG 3 cut(s) 1027, 1206, 1567
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 6 cut(s) 394, 820, 900, 967, 1360, 1716
BstMAI GTCTC 1 cut(s) 1258
BstMBI GATC 6 cut(s) 391, 817, 897, 964, 1357, 1713
BstMWI GCNNNNNNNGC 3 cut(s) 584, 1142, 1168
BstNI CCWGG 2 cut(s) 1064, 1287
BstNSI RCATGY 2 cut(s) 1149, 1202
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 2 cut(s) 1062, 1285
BstSFI CTRYAG 2 cut(s) 1392, 1450
BstSLI GKGCMC 1 cut(s) 59
BstSNI TACGTA 1 cut(s) 1606
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 626, 1071, 1378, 1711
BstX2I RGATCY 3 cut(s) 391, 964, 1357
BstXI CCANNNNNNTGG 1 cut(s) 1063
BstYI RGATCY 3 cut(s) 391, 964, 1357
BstZ17I GTATAC 1 cut(s) 1509
BsuRI GGCC 4 cut(s) 659, 982, 1519, 1793
BtgI CCRYGG 2 cut(s) 660, 1885
BtsCI GGATG 3 cut(s) 1027, 1206, 1567
BtsI GCAGTG 2 cut(s) 283, 1417
BtsIMutI CAGTG 3 cut(s) 283, 578, 1417
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 12, 1134
CaiI CAGNNNCTG 2 cut(s) 466, 1804
CciI TCATGA 1 cut(s) 121
Cfr13I GGNCC 5 cut(s) 236, 657, 980, 1517, 1792
CseI GACGC 2 cut(s) 602, 991
Csp6I GTAC 7 cut(s) 35, 137, 198, 413, 1296, 1603, 1840
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviQI GTAC 7 cut(s) 35, 137, 198, 413, 1296, 1603, 1840
DdeI CTNAG 4 cut(s) 450, 486, 1158, 1167
DpnI GATC 6 cut(s) 393, 819, 899, 966, 1359, 1715
DpnII GATC 6 cut(s) 391, 817, 897, 964, 1357, 1713
DraI TTTAAA 1 cut(s) 1546
DraIII CACNNNGTG 1 cut(s) 1412
Eam1104I CTCTTC 4 cut(s) 1035, 1493, 1527, 1560
EarI CTCTTC 4 cut(s) 1035, 1493, 1527, 1560
Eco105I TACGTA 1 cut(s) 1606
Eco130I CCWWGG 2 cut(s) 201, 1885
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 3 cut(s) 1158, 1781, 1797
Eco72I CACGTG 1 cut(s) 1730
Eco88I CYCGRG 2 cut(s) 968, 1784
Eco91I GGTNACC 1 cut(s) 839
EcoO109I RGGNCCY 1 cut(s) 1792
EcoO65I GGTNACC 1 cut(s) 839
EcoRII CCWGG 2 cut(s) 1062, 1285
EcoT14I CCWWGG 2 cut(s) 201, 1885
ErhI CCWWGG 2 cut(s) 201, 1885
FaqI GGGAC 3 cut(s) 1469, 1590, 1596
FbaI TGATCA 2 cut(s) 817, 1713
FblI GTMKAC 1 cut(s) 1508
Fnu4HI GCNGC 6 cut(s) 556, 640, 1085, 1392, 1475, 1725
FokI GGATG 3 cut(s) 1034, 1193, 1574
Fsp4HI GCNGC 6 cut(s) 556, 640, 1085, 1392, 1475, 1725
FspBI CTAG 9 cut(s) 303, 444, 635, 845, 1227, 1257, 1316, 1439, 1836
GluI GCNGC 6 cut(s) 556, 640, 1085, 1392, 1475, 1725
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 829
HaeIII GGCC 4 cut(s) 659, 982, 1519, 1793
HgaI GACGC 2 cut(s) 602, 991
Hin1I GRCGYC 1 cut(s) 613
HincII GTYRAC 1 cut(s) 1735
HindII GTYRAC 1 cut(s) 1735
HinfI GANTC 7 cut(s) 43, 156, 974, 1119, 1398, 1457, 1584
HphI GGTGA 4 cut(s) 52, 892, 1114, 1583
Hpy166II GTNNAC 5 cut(s) 281, 670, 1417, 1509, 1735
Hpy188I TCNGA 7 cut(s) 391, 487, 650, 1081, 1177, 1706, 1806
Hpy188III TCNNGA 6 cut(s) 122, 153, 239, 298, 862, 1559
Hpy8I GTNNAC 5 cut(s) 281, 670, 1417, 1509, 1735
HpyAV CCTTC 9 cut(s) 11, 101, 648, 740, 1182, 1683, 1783, 1805, 1839
HpyCH4III ACNGT 6 cut(s) 148, 582, 783, 1191, 1421, 1602
HpyCH4IV ACGT 2 cut(s) 1605, 1729
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 1142, 1168
HpyF3I CTNAG 4 cut(s) 450, 486, 1158, 1167
HpySE526I ACGT 2 cut(s) 1605, 1729
Hsp92I GRCGYC 1 cut(s) 613
Ksp22I TGATCA 2 cut(s) 817, 1713
Kzo9I GATC 6 cut(s) 391, 817, 897, 964, 1357, 1713
LguI GCTCTTC 1 cut(s) 1493
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 4 cut(s) 626, 1071, 1378, 1711
LweI GCATC 1 cut(s) 565
MaeI CTAG 9 cut(s) 303, 444, 635, 845, 1227, 1257, 1316, 1439, 1836
MaeII ACGT 2 cut(s) 1605, 1729
MaeIII GTNAC 8 cut(s) 40, 777, 839, 866, 1003, 1024, 1375, 1399
MalI GATC 6 cut(s) 393, 819, 899, 966, 1359, 1715
MboI GATC 6 cut(s) 391, 817, 897, 964, 1357, 1713
MboII GAAGA 8 cut(s) 663, 1049, 1052, 1510, 1514, 1547, 1667, 1824
MflI RGATCY 3 cut(s) 391, 964, 1357
MhlI GDGCHC 2 cut(s) 59, 473
MlyI GAGTC 4 cut(s) 37, 1407, 1451, 1578
MmeI TCCRAC 1 cut(s) 765
MroXI GAANNNNTTC 1 cut(s) 1191
MseI TTAA 4 cut(s) 600, 909, 1346, 1545
MslI CAYNNNNRTG 4 cut(s) 257, 1012, 1368, 1814
MspR9I CCNGG 2 cut(s) 1064, 1287
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 2 cut(s) 1064, 1287
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 584, 1142, 1168
NcoI CCATGG 1 cut(s) 1885
NdeII GATC 6 cut(s) 391, 817, 897, 964, 1357, 1713
NlaIV GGNNCC 2 cut(s) 58, 208
NmuCI GTSAC 5 cut(s) 40, 866, 1003, 1024, 1399
NspI RCATGY 2 cut(s) 1149, 1202
OliI CACNNNNGTG 1 cut(s) 1012
PagI TCATGA 1 cut(s) 121
PaqCI CACCTGC 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 1493
PctI GAATGC 1 cut(s) 716
PdmI GAANNNNTTC 1 cut(s) 1191
PfeI GAWTC 3 cut(s) 156, 974, 1119
Pfl23II CGTACG 1 cut(s) 1602
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 6 cut(s) 557, 641, 1086, 1393, 1476, 1726
PleI GAGTC 4 cut(s) 37, 1406, 1451, 1578
PmaCI CACGTG 1 cut(s) 1730
PmlI CACGTG 1 cut(s) 1730
PpsI GAGTC 4 cut(s) 37, 1406, 1451, 1578
Ppu21I YACGTR 2 cut(s) 1606, 1730
Psp6I CCWGG 2 cut(s) 1062, 1285
PspCI CACGTG 1 cut(s) 1730
PspEI GGTNACC 1 cut(s) 839
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 2 cut(s) 1062, 1285
PspLI CGTACG 1 cut(s) 1602
PspN4I GGNNCC 2 cut(s) 58, 208
PspPI GGNCC 5 cut(s) 236, 657, 980, 1517, 1792
PsrI GAACNNNNNNTAC 4 cut(s) 94, 126, 1086, 1118
PstI CTGCAG 1 cut(s) 1396
PstNI CAGNNNCTG 2 cut(s) 466, 1804
PsuI RGATCY 3 cut(s) 391, 964, 1357
RsaI GTAC 7 cut(s) 36, 138, 199, 414, 1297, 1604, 1841
RsaNI GTAC 7 cut(s) 35, 137, 198, 413, 1296, 1603, 1840
RseI CAYNNNNRTG 4 cut(s) 257, 1012, 1368, 1814
SapI GCTCTTC 1 cut(s) 1493
SaqAI TTAA 4 cut(s) 600, 909, 1346, 1545
SatI GCNGC 6 cut(s) 556, 640, 1085, 1392, 1475, 1725
Sau3AI GATC 6 cut(s) 391, 817, 897, 964, 1357, 1713
Sau96I GGNCC 5 cut(s) 236, 657, 980, 1517, 1792
ScaI AGTACT 1 cut(s) 138
SchI GAGTC 4 cut(s) 37, 1407, 1451, 1578
ScrFI CCNGG 2 cut(s) 1064, 1287
SduI GDGCHC 2 cut(s) 59, 473
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 2 cut(s) 1392, 1450
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 4 cut(s) 257, 1012, 1368, 1814
SnaBI TACGTA 1 cut(s) 1606
SsiI CCGC 3 cut(s) 180, 555, 1474
SspMI CTAG 9 cut(s) 303, 444, 635, 845, 1227, 1257, 1316, 1439, 1836
StyD4I CCNGG 2 cut(s) 1062, 1285
StyI CCWWGG 2 cut(s) 201, 1885
TaaI ACNGT 6 cut(s) 148, 582, 783, 1191, 1421, 1602
TaiI ACGT 2 cut(s) 1608, 1732
TaqI TCGA 3 cut(s) 291, 896, 1687
TatI WGTACW 2 cut(s) 34, 136
TauI GCSGC 2 cut(s) 558, 1477
TfiI GAWTC 3 cut(s) 156, 974, 1119
Tru1I TTAA 4 cut(s) 600, 909, 1346, 1545
Tru9I TTAA 4 cut(s) 600, 909, 1346, 1545
TscAI CASTG 3 cut(s) 283, 585, 1417
TseFI GTSAC 5 cut(s) 40, 866, 1003, 1024, 1399
TseI GCWGC 4 cut(s) 639, 1084, 1391, 1724
Tsp45I GTSAC 5 cut(s) 40, 866, 1003, 1024, 1399
TspDTI ATGAA 4 cut(s) 138, 546, 821, 1155
TspGWI ACGGA 1 cut(s) 977
TspRI CASTG 3 cut(s) 283, 585, 1417
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 5 cut(s) 191, 375, 905, 943, 1718
XceI RCATGY 2 cut(s) 1149, 1202
XcmI CCANNNNNNNNNTGG 2 cut(s) 339, 700
XmiI GTMKAC 1 cut(s) 1508
XmnI GAANNNNTTC 1 cut(s) 1191
XspI CTAG 9 cut(s) 303, 444, 635, 845, 1227, 1257, 1316, 1439, 1836
ZrmI AGTACT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.