MD14G1191500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000150
Physical Location & Seq
Reverse (-)
28245289 .. 28250010
4722 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1191500.v1.1.491

Sequence Viewer

Length: 519 bp
ATGACTGGTACTAAGCCTTATCCTTCTTTTGTGGGGAGGGCTGTTGTCGTAAACGATGTTATCTACGCCGCATCTACAGTGAGCGGGGTTATCATATCATTCTCTCTTGGGATGGATTCAGATCCTAGTGGTCGCATTCTCTTTACCGTAAAGAATCTATTCAAGTTTCCGGAGTTCACAAGTTTCCTTGAGTTGGACAACACTGTAACAGAGTCTTTGGTTCATTTGGGGGAATTAAGATTTTGTCTCCTGCAAACTTTCTTTTGCAGCAGGGGCAGGGGATTTCAACCTCTGTGGATCACAACATTAGAAATTGTCAATGACGGTTCAGGGGAAAGGTGTATCAAGACTTTATGTTCTGTTGGTCGTGACACTGATATTCAGATTTCTGGTGGATTCGAACTTGGTTACTGCTTCACACCACAATTTAAGGATCTTGAACCCGAAGAAGACAACAAATTTCAGGCAGCGATGGTACAGGTGAAATACAAGCATCTATATGGAATCTTTTTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.27

Weight (kDa)

5.17

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 2 cut(s) 69, 84
AclWI GGATC 3 cut(s) 116, 305, 441
AcsI RAATTY 1 cut(s) 458
AfaI GTAC 2 cut(s) 10, 477
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 3 cut(s) 163, 287, 440
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 3 cut(s) 116, 305, 441
Aor13HI TCCGGA 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 267, 467
ApoI RAATTY 1 cut(s) 458
Asp700I GAANNNNTTC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 493
AsuII TTCGAA 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 279, 479
BccI CCATC 2 cut(s) 106, 466
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 3 cut(s) 69, 268, 468
BlsI GCNGC 3 cut(s) 70, 269, 469
BmsI GCATC 2 cut(s) 80, 502
BpiI GAAGAC 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 10
Bse8I GATNNNNATC 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 169
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 279, 479
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 135
Bsp119I TTCGAA 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 3 cut(s) 121, 297, 433
BspACI CCGC 2 cut(s) 69, 84
BspEI TCCGGA 1 cut(s) 169
BspPI GGATC 3 cut(s) 116, 305, 441
BspT104I TTCGAA 1 cut(s) 399
BsrBI CCGCTC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 10
BssMI GATC 3 cut(s) 121, 297, 433
Bst4CI ACNGT 4 cut(s) 79, 148, 205, 326
BstBI TTCGAA 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 3 cut(s) 124, 300, 436
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 3 cut(s) 121, 297, 433
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 279, 479
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 2 cut(s) 121, 433
BstYI RGATCY 2 cut(s) 121, 433
BtgZI GCGATG 1 cut(s) 485
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 3 cut(s) 84, 201, 372
Csp6I GTAC 2 cut(s) 9, 476
CspCI CAANNNNNGTGG 2 cut(s) 275, 310
CviJI RGCY 2 cut(s) 16, 41
CviKI_1 RGCY 2 cut(s) 16, 41
CviQI GTAC 2 cut(s) 9, 476
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 123, 299, 435
DpnII GATC 3 cut(s) 121, 297, 433
FaiI YATR 4 cut(s) 95, 355, 499, 501
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 3 cut(s) 69, 268, 468
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 3 cut(s) 69, 268, 468
FspBI CTAG 1 cut(s) 126
GluI GCNGC 3 cut(s) 69, 268, 468
HapII CCGG 1 cut(s) 170
HinfI GANTC 5 cut(s) 116, 154, 212, 396, 504
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 2 cut(s) 52, 177
Hpy188I TCNGA 2 cut(s) 121, 384
Hpy188III TCNNGA 4 cut(s) 170, 346, 368, 437
Hpy8I GTNNAC 2 cut(s) 52, 177
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 4 cut(s) 79, 148, 205, 326
HpyCH4V TGCA 2 cut(s) 253, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 121, 297, 433
LpnPI CCDG 8 cut(s) 183, 256, 262, 263, 315, 375, 449, 464
Lsp1109I GCAGC 2 cut(s) 279, 479
LweI GCATC 2 cut(s) 80, 502
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 205, 368, 407
MalI GATC 3 cut(s) 123, 299, 435
MbiI CCGCTC 1 cut(s) 84
MboI GATC 3 cut(s) 121, 297, 433
MboII GAAGA 2 cut(s) 458, 461
MflI RGATCY 2 cut(s) 121, 433
MluCI AATT 4 cut(s) 233, 312, 425, 458
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 2 cut(s) 30, 300
MroI TCCGGA 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 3 cut(s) 236, 429, 517
MslI CAYNNNNRTG 1 cut(s) 498
MspI CCGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 273
NdeII GATC 3 cut(s) 121, 297, 433
NmuCI GTSAC 1 cut(s) 368
NspV TTCGAA 1 cut(s) 399
PctI GAATGC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 4 cut(s) 116, 154, 396, 504
PkrI GCNGC 3 cut(s) 70, 269, 469
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PsuI RGATCY 2 cut(s) 121, 433
RsaI GTAC 2 cut(s) 10, 477
RsaNI GTAC 2 cut(s) 9, 476
RseI CAYNNNNRTG 1 cut(s) 498
SaqAI TTAA 3 cut(s) 236, 429, 517
SatI GCNGC 3 cut(s) 69, 268, 468
Sau3AI GATC 3 cut(s) 121, 297, 433
SchI GAGTC 1 cut(s) 221
SetI ASST 3 cut(s) 292, 341, 483
SfaNI GCATC 2 cut(s) 80, 502
SfcI CTRYAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 4 cut(s) 233, 312, 425, 458
SsiI CCGC 2 cut(s) 69, 84
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 4 cut(s) 79, 148, 205, 326
TaqI TCGA 1 cut(s) 399
TasI AATT 4 cut(s) 233, 312, 425, 458
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 4 cut(s) 116, 154, 396, 504
Tru1I TTAA 3 cut(s) 236, 429, 517
Tru9I TTAA 3 cut(s) 236, 429, 517
TscAI CASTG 3 cut(s) 84, 208, 379
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 2 cut(s) 267, 467
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 3 cut(s) 84, 208, 379
XapI RAATTY 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.