Rmu_sc0031430.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031430.1
OG0000150
Physical Location & Seq
Forward (+)
14161 .. 15021
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031430.1_g000005.1.cds

Sequence Viewer

Length: 648 bp
atgctgtactatcttgcacaaccaatgtgctttcctaggattcaagaaccatcattcgagggatatgatccatccagtgattcatgggagtcattgcctcctttcccagattattctctggatcaggcacagaccgagatgaccggttatgccgattcagacaaggatggtgacattgttaagcgtcgacattttctgggcaacccattgtctctgttaataacagtcaagtgtcatccaccgcgcaggttactaggggatagaactcagaatttggttcatttggggaggcaagacttttgtgttgttcaaacaggtgagaacatacattctcttgagtatcaatatctatgtgtttccacctttcgaattgtcggtgaagaacaagaattgaaaatcgaaaccttaaagtcatatgtttttcgcatagcgatcgaaggaaatgatccatttgaagttaagttcagctttacacctgattataaggacattgaaccagaagaaaaagagtatagcgcaactaatgcactgcctgaaagtaaaagtgctgcatggacttcaaaggtggaagaagacttcttttcctttccaattagtcctaaactaggattggaggcattcagaaccaaaaaagaagatgaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.8

Weight (kDa)

4.79

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 187
AccII CGCG 1 cut(s) 244
AciI CCGC 1 cut(s) 242
AclWI GGATC 3 cut(s) 62, 129, 440
AcsI RAATTY 1 cut(s) 271
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 605
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 6 cut(s) 44, 311, 394, 455, 494, 561
AluBI AGCT 1 cut(s) 468
AluI AGCT 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 3 cut(s) 62, 129, 440
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 1 cut(s) 271
AsiGI ACCGGT 1 cut(s) 143
AspA2I CCTAGG 1 cut(s) 35
AspLEI GCGC 2 cut(s) 246, 518
AsuHPI GGTGA 3 cut(s) 182, 329, 389
AsuII TTCGAA 1 cut(s) 367
AvrII CCTAGG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 535
BccI CCATC 3 cut(s) 58, 79, 161
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 3 cut(s) 36, 254, 605
BfuAI ACCTGC 1 cut(s) 237
BisI GCNGC 1 cut(s) 549
BlnI CCTAGG 1 cut(s) 35
BlsI GCNGC 1 cut(s) 550
BpiI GAAGAC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 3 cut(s) 71, 172, 235
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 535
Bsh1236I CGCG 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 435
BshTI ACCGGT 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 435
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 605
BsmAI GTCTC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 617
Bsp119I TTCGAA 1 cut(s) 367
Bsp143I GATC 4 cut(s) 67, 121, 432, 445
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 237
BspPI GGATC 3 cut(s) 62, 129, 440
BspT104I TTCGAA 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 4 cut(s) 67, 121, 432, 445
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 71, 172, 235
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 2 cut(s) 246, 518
BstKTI GATC 4 cut(s) 70, 124, 435, 448
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 4 cut(s) 67, 121, 432, 445
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 1 cut(s) 579
BtsCI GGATG 3 cut(s) 71, 172, 235
BtsI GCAGTG 1 cut(s) 527
BtsIMutI CAGTG 2 cut(s) 82, 527
BveI ACCTGC 1 cut(s) 237
CfoI GCGC 2 cut(s) 246, 518
Cfr10I RCCGGY 1 cut(s) 143
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 7
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 2 cut(s) 84, 552
CviJI RGCY 1 cut(s) 468
CviKI_1 RGCY 1 cut(s) 468
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 267
DpnI GATC 4 cut(s) 69, 123, 434, 447
DpnII GATC 4 cut(s) 67, 121, 432, 445
Eco130I CCWWGG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 87, 555
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FatI CATG 2 cut(s) 83, 551
FauNDI CATATG 1 cut(s) 415
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 3 cut(s) 58, 179, 222
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 3 cut(s) 36, 254, 605
GlaI GCGC 2 cut(s) 245, 517
GluI GCNGC 1 cut(s) 549
HapII CCGG 1 cut(s) 144
HgaI GACGC 1 cut(s) 173
HhaI GCGC 2 cut(s) 246, 518
Hin1II CATG 2 cut(s) 87, 555
Hin6I GCGC 2 cut(s) 244, 516
HinP1I GCGC 2 cut(s) 244, 516
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 4 cut(s) 40, 80, 89, 155
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 182, 329, 389
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 3 cut(s) 160, 270, 623
Hpy188III TCNNGA 3 cut(s) 44, 119, 335
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 17, 527, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 2 cut(s) 87, 555
HspAI GCGC 2 cut(s) 244, 516
Kzo9I GATC 4 cut(s) 67, 121, 432, 445
Lsp1109I GCAGC 1 cut(s) 535
MaeI CTAG 3 cut(s) 36, 254, 605
MaeIII GTNAC 2 cut(s) 170, 249
MalI GATC 4 cut(s) 69, 123, 434, 447
MboI GATC 4 cut(s) 67, 121, 432, 445
MboII GAAGA 5 cut(s) 392, 512, 581, 584, 647
MluCI AATT 4 cut(s) 271, 369, 389, 591
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 52, 108, 282, 607
MseI TTAA 4 cut(s) 180, 218, 407, 459
MspI CCGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 617
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 524
NdeI CATATG 1 cut(s) 415
NdeII GATC 4 cut(s) 67, 121, 432, 445
NlaIII CATG 2 cut(s) 87, 555
NmuCI GTSAC 1 cut(s) 170
NspV TTCGAA 1 cut(s) 367
PctI GAATGC 1 cut(s) 617
PfeI GAWTC 3 cut(s) 40, 80, 155
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 1 cut(s) 550
Ple19I CGATCG 1 cut(s) 435
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PsiI TTATAA 1 cut(s) 483
PvuI CGATCG 1 cut(s) 435
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SalI GTCGAC 1 cut(s) 186
SaqAI TTAA 4 cut(s) 180, 218, 407, 459
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 4 cut(s) 67, 121, 432, 445
SchI GAGTC 1 cut(s) 98
SetI ASST 7 cut(s) 251, 319, 365, 407, 470, 478, 567
SfuI TTCGAA 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 4 cut(s) 271, 369, 389, 591
SsiI CCGC 1 cut(s) 242
SspMI CTAG 3 cut(s) 36, 254, 605
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 5 cut(s) 57, 187, 367, 399, 435
TaqII GACCGA 1 cut(s) 149
TasI AATT 4 cut(s) 271, 369, 389, 591
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 3 cut(s) 40, 80, 155
Tru1I TTAA 4 cut(s) 180, 218, 407, 459
Tru9I TTAA 4 cut(s) 180, 218, 407, 459
TscAI CASTG 2 cut(s) 82, 534
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 72, 269
TspRI CASTG 2 cut(s) 82, 534
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 1 cut(s) 271
XmaJI CCTAGG 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 3 cut(s) 36, 254, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.