FvH4_5g15972

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000150
Physical Location & Seq
Forward (+)
9067483 .. 9068184
702 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15972.t1

Sequence Viewer

Length: 615 bp
ATGTCTTTTGCTTATGGCGTGCATTGCAAGAGATGGTTTGCTGTTCAATATTGTAACTCTGCTCACTATCCATTCCGAGGGAGGGCTGTGGTCATCGGTAATACAATTTTCGCTCTATCAAAAGCACACGGGGAGGTGATAGCCTTTTCCCTTGGTGAGGATTATAATGATGCAGCTGGGGTAGTTCTTTCTCTGAGCACACCAACTCTGGTGCCATGGGTGAACCGCTGGTTCCAACCTTTGGTGGGTGGACCAGTAGAACATGGGGAACAAGTTGAGCAAACTGAGGCTATTGTGCATTTAGGGGACATGAATTTCTGTTTACTACAAACGGCATTACCTGCTCAACATCATGATCGTCAATCCTTATATATAACGTCATTTGAGATCCTGAATGAAGGCGGATCATGGGTGATCAATGCAATTGATTCAACTATTCGAAATGTGAATCCCGAAGGTTGTGGCAGGTTTCTACTAAAGTTCTGTTTTGCACCAGAAGTTGAAGATCTAGAACCTGACAGTGATGCGGTTGATACTTTCCTGGAACAATGGTATGTAAAGAGTGGAGAAAGCGATGAAGATTTTGAACGGTGGCCGCGTGAAAGAGCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.98

Weight (kDa)

4.76

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
Acc36I ACCTGC 2 cut(s) 349, 456
AccB1I GGYRCC 1 cut(s) 211
AccB7I CCANNNNNTGG 1 cut(s) 241
AccII CGCG 1 cut(s) 598
AciI CCGC 4 cut(s) 226, 402, 527, 596
AclWI GGATC 2 cut(s) 382, 412
AcoI YGGCCR 1 cut(s) 593
AcsI RAATTY 1 cut(s) 313
AfiI CCNNNNNNNGG 5 cut(s) 77, 82, 157, 241, 245
AgsI TTSAA 4 cut(s) 47, 432, 503, 587
AjnI CCWGG 1 cut(s) 540
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 2 cut(s) 382, 412
AoxI GGCC 1 cut(s) 593
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 4 cut(s) 148, 167, 232, 424
AsuII TTCGAA 1 cut(s) 439
AvaII GGWCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 1 cut(s) 542
BclI TGATCA 1 cut(s) 414
BfaI CTAG 1 cut(s) 509
BfuAI ACCTGC 2 cut(s) 349, 456
BglII AGATCT 1 cut(s) 505
BisI GCNGC 2 cut(s) 174, 596
BlsI GCNGC 2 cut(s) 175, 597
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 213, 233
BmrFI CCNGG 1 cut(s) 542
BmsI GCATC 2 cut(s) 160, 514
Bpu14I TTCGAA 1 cut(s) 439
BsaJI CCNNGG 3 cut(s) 76, 151, 215
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 82, 157, 241, 245
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 3 cut(s) 76, 151, 215
BseLI CCNNNNNNNGG 5 cut(s) 77, 82, 157, 241, 245
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 185, 276
BseNI ACTGG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 185
BseYI CCCAGC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 1 cut(s) 595
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 200
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 5 cut(s) 77, 82, 157, 241, 245
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 595
Bsp119I TTCGAA 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 5 cut(s) 355, 387, 404, 414, 505
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 4 cut(s) 226, 402, 527, 596
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 2 cut(s) 186, 277
BspFNI CGCG 1 cut(s) 598
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 213, 233
BspMI ACCTGC 2 cut(s) 349, 456
BspPI GGATC 2 cut(s) 382, 412
BspT104I TTCGAA 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 22
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 76, 151, 215
BssMI GATC 5 cut(s) 355, 387, 404, 414, 505
BssT1I CCWWGG 2 cut(s) 151, 215
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 2 cut(s) 521, 591
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 194, 285
BstDSI CCRYGG 1 cut(s) 215
BstENI CCTNNNNNAGG 1 cut(s) 155
BstFNI CGCG 1 cut(s) 598
BstKTI GATC 5 cut(s) 358, 390, 407, 417, 508
BstMBI GATC 5 cut(s) 355, 387, 404, 414, 505
BstMWI GCNNNNNNNGC 2 cut(s) 24, 341
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 540
BstUI CGCG 1 cut(s) 598
BstV1I GCAGC 1 cut(s) 185
BstX2I RGATCY 2 cut(s) 387, 505
BstYI RGATCY 2 cut(s) 387, 505
BsuRI GGCC 1 cut(s) 595
BtgI CCRYGG 1 cut(s) 215
BtgZI GCGATG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 526
BveI ACCTGC 2 cut(s) 349, 456
Cac8I GCNNGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 251
CviAII CATG 5 cut(s) 216, 263, 310, 353, 408
CviJI RGCY 6 cut(s) 86, 143, 176, 290, 595, 608
CviKI_1 RGCY 6 cut(s) 86, 143, 176, 290, 595, 608
DdeI CTNAG 2 cut(s) 194, 285
DpnI GATC 5 cut(s) 357, 389, 406, 416, 507
DpnII GATC 5 cut(s) 355, 387, 404, 414, 505
EaeI YGGCCR 1 cut(s) 593
EciI GGCGGA 1 cut(s) 417
Eco130I CCWWGG 2 cut(s) 151, 215
Eco47I GGWCC 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 151, 215
ErhI CCWWGG 2 cut(s) 151, 215
FaeI CATG 5 cut(s) 219, 266, 313, 356, 411
FaqI GGGAC 1 cut(s) 320
FatI CATG 5 cut(s) 215, 262, 309, 352, 407
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 174, 596
Fsp4HI GCNGC 2 cut(s) 174, 596
FspBI CTAG 1 cut(s) 509
GluI GCNGC 2 cut(s) 174, 596
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 595
Hin1II CATG 5 cut(s) 219, 266, 313, 356, 411
HinfI GANTC 2 cut(s) 428, 448
HphI GGTGA 4 cut(s) 148, 167, 232, 424
Hpy166II GTNNAC 3 cut(s) 223, 251, 323
Hpy188I TCNGA 2 cut(s) 77, 195
Hpy188III TCNNGA 4 cut(s) 353, 391, 452, 509
Hpy8I GTNNAC 3 cut(s) 223, 251, 323
HpyAV CCTTC 2 cut(s) 392, 449
HpyCH4III ACNGT 2 cut(s) 521, 591
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 6 cut(s) 22, 27, 173, 298, 422, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 341
HpyF3I CTNAG 2 cut(s) 194, 285
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 5 cut(s) 219, 266, 313, 356, 411
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 5 cut(s) 355, 387, 404, 414, 505
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 2 cut(s) 160, 514
MaeI CTAG 1 cut(s) 509
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 53
MalI GATC 5 cut(s) 357, 389, 406, 416, 507
MboI GATC 5 cut(s) 355, 387, 404, 414, 505
MboII GAAGA 2 cut(s) 515, 590
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 2 cut(s) 387, 505
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 3 cut(s) 105, 313, 423
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 5 cut(s) 71, 75, 127, 151, 280
MspA1I CMGCKG 2 cut(s) 176, 228
MspR9I CCNGG 1 cut(s) 542
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 542
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 2 cut(s) 24, 341
NcoI CCATGG 1 cut(s) 215
NdeII GATC 5 cut(s) 355, 387, 404, 414, 505
NlaIII CATG 5 cut(s) 219, 266, 313, 356, 411
NlaIV GGNNCC 2 cut(s) 213, 233
NspV TTCGAA 1 cut(s) 439
PagI TCATGA 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PfeI GAWTC 2 cut(s) 428, 448
PflMI CCANNNNNTGG 1 cut(s) 241
PfoI TCCNGGA 1 cut(s) 540
PkrI GCNGC 2 cut(s) 175, 597
PsiI TTATAA 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 540
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 2 cut(s) 213, 233
PspPI GGNCC 1 cut(s) 251
PsuI RGATCY 2 cut(s) 387, 505
PvuII CAGCTG 1 cut(s) 176
SatI GCNGC 2 cut(s) 174, 596
Sau3AI GATC 5 cut(s) 355, 387, 404, 414, 505
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 200
SetI ASST 8 cut(s) 138, 178, 241, 343, 380, 460, 470, 517
SfaNI GCATC 2 cut(s) 160, 514
SfuI TTCGAA 1 cut(s) 439
SinI GGWCC 1 cut(s) 251
Sse9I AATT 3 cut(s) 105, 313, 423
SsiI CCGC 4 cut(s) 226, 402, 527, 596
SspI AATATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 2 cut(s) 151, 215
TaaI ACNGT 2 cut(s) 521, 591
TaiI ACGT 1 cut(s) 380
TaqI TCGA 1 cut(s) 439
TasI AATT 3 cut(s) 105, 313, 423
TauI GCSGC 1 cut(s) 598
TfiI GAWTC 2 cut(s) 428, 448
TscAI CASTG 1 cut(s) 526
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 326, 411, 591
TspRI CASTG 1 cut(s) 526
Van91I CCANNNNNTGG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 1 cut(s) 313
XbaI TCTAGA 1 cut(s) 508
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.