Rroxscaffold_4G00280240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000150
Physical Location & Seq
Reverse (-)
2844266 .. 2846736
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280240.1

Sequence Viewer

Length: 417 bp
ATGAGCAAGAACAAAAATGCGATTGAAAATAGAGGGAATGTGATGCTTAAGATATTAGAAGAGGGTCGTGCCGATGAACAGATGAAATTCATCACAAACCTACCCTACACTGTTGTTACAAATAGTATCCGTCTAGGATTTATGAATGATATATATGGTGAAAACTTCTCCGCATATATGCATCGGGATGAAAAACTTAGTAATTGGTTGACGACTCTCGAACTACAGCAGGTTTCTCCACCCAAAATAACTAAGCAGTATTGTCTTGTCATATCAGCATATGGAATGATGTACTCTCTTGCAGAACCAATGTGCTTTCCTAAGATTCAAGAACCATCGTTCGAGCGATATGATCCCACTATTTATTCATATGAGTCCTTGCCTCCGTTTTCAGATTATTCTCTTAAGCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.05

Weight (kDa)

5.43

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AciI CCGC 1 cut(s) 171
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 293
AflII CTTAAG 2 cut(s) 47, 404
AgsI TTSAA 2 cut(s) 26, 329
AlwI GGATC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 170
BccI CCATC 1 cut(s) 343
BciVI GTATCC 1 cut(s) 137
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 224
BfrI CTTAAG 2 cut(s) 47, 404
BfuAI ACCTGC 1 cut(s) 220
BfuI GTATCC 1 cut(s) 137
BmsI GCATC 2 cut(s) 33, 190
BseGI GGATG 1 cut(s) 193
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 1 cut(s) 171
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 1 cut(s) 347
BspTI CTTAAG 2 cut(s) 47, 404
BssMI GATC 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 2 cut(s) 47, 404
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 197, 252, 321
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 224
BsuI GTATCC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 411
Csp6I GTAC 1 cut(s) 292
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 3 cut(s) 197, 252, 321
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 183
FauNDI CATATG 2 cut(s) 280, 370
FokI GGATG 1 cut(s) 200
FspBI CTAG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 3 cut(s) 214, 325, 374
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 3 cut(s) 185, 218, 329
Hpy8I GTNNAC 1 cut(s) 210
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 181, 302
HpyF3I CTNAG 3 cut(s) 197, 252, 321
Kzo9I GATC 1 cut(s) 352
LpnPI CCDG 1 cut(s) 215
LweI GCATC 2 cut(s) 33, 190
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 1 cut(s) 71
MluCI AATT 2 cut(s) 86, 202
MlyI GAGTC 2 cut(s) 208, 383
MnlI CCTC 3 cut(s) 26, 55, 393
Mph1103I ATGCAT 1 cut(s) 183
MseI TTAA 2 cut(s) 48, 405
MslI CAYNNNNRTG 1 cut(s) 186
MspCI CTTAAG 2 cut(s) 47, 404
NdeI CATATG 2 cut(s) 280, 370
NdeII GATC 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 183
PfeI GAWTC 1 cut(s) 325
PleI GAGTC 2 cut(s) 208, 382
PpsI GAGTC 2 cut(s) 208, 382
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 2 cut(s) 48, 405
Sau3AI GATC 1 cut(s) 352
SchI GAGTC 2 cut(s) 208, 383
SetI ASST 2 cut(s) 102, 234
SfaNI GCATC 2 cut(s) 33, 190
SfcI CTRYAG 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 47, 404
SmoI CTYRAG 2 cut(s) 47, 404
Sse9I AATT 2 cut(s) 86, 202
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 219, 342
TasI AATT 2 cut(s) 86, 202
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 2 cut(s) 48, 405
Tru9I TTAA 2 cut(s) 48, 405
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 6 cut(s) 79, 90, 98, 158, 204, 357
TspGWI ACGGA 2 cut(s) 119, 375
TspRI CASTG 1 cut(s) 115
Vha464I CTTAAG 2 cut(s) 47, 404
XapI RAATTY 1 cut(s) 86
XspI CTAG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.